HHsearch results for GI: 254780454 and protein with PDBid: 1rwz_A
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A*
Probab=98.83 E-value=1.7e-06 Score=57.03 Aligned_cols=205 Identities=12% Similarity=0.233 Sum_probs=133.4
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHH
Q ss_conf 5898599999999987502037888610133899998997999996782--899999977------75268079994998
Q gi|254780454|r 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHL 73 (385)
Q Consensus 2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~ 73 (385)
+..++.+.|...++.+..+++ .+.+++.++++.++|.|.. .-+...+++ +++++-.+.|+.+.
T Consensus 3 ~~~~~~~~~k~i~~~l~~l~~---------e~~~~~~~~Gi~i~~~D~s~v~li~~~l~~~~F~~y~~~~~~~igi~~~~ 73 (245)
T 1rwz_A 3 DVIMTGELLKTVTRAIVALVS---------EARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDR 73 (245)
T ss_dssp EEEEEHHHHHHHHHHHHTTCS---------EEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHH
T ss_pred EEEECHHHHHHHHHHHHHHHC---------CEEEEEECCEEEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHHH
T ss_conf 668618999999999999758---------58999938957999998774899999978787937526988799999899
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCC---CCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCC
Q ss_conf 7788740777773047773367508999867820243036621---1432123324304505611355420220230024
Q gi|254780454|r 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES---EFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 (385)
Q Consensus 74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~---~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~ 150 (385)
|..++|.+..+..+.+..+++ ..+.+.-+..++++..++.+ +.+.+|+.+....+.+++..|+++++... ..+
T Consensus 74 l~kilk~~~~~d~l~l~~~~~--~~l~i~~~~~~~~~~l~~~d~~~~~~~ip~~e~~~~i~m~s~~f~~~i~~l~-~~~- 149 (245)
T 1rwz_A 74 IFDISKSISTKDLVELIVEDE--STLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAAD-KIS- 149 (245)
T ss_dssp HHHHHTTSCTTSEEEEEESSS--SEEEEEETTEEEEEECBCGGGSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHH-TTC-
T ss_pred HHHHHHCCCCCCEEEEEECCC--CCEEEEEEEEEEEEEECCHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHH-HCC-
T ss_conf 898873258996599998068--8249999861245640241102246799985531799962999999999986-057-
Q ss_pred CCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC-----CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 55652101166776178734899985341576666435787-----5331000001000122221027764643313345
Q gi|254780454|r 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-----IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225 (385)
Q Consensus 151 d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~-----~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~ 225 (385)
|. |.|...++...+. ++|.. ......+... ..++....-+.+.|..+.|...- .+.|++.++.
T Consensus 150 d~-------i~i~~~~~~l~~~---~~g~~-~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l-s~~V~i~~~~ 217 (245)
T 1rwz_A 150 DQ-------VIFRSDKEGFRIE---AKGDV-DSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGS-GDLLTIHLGT 217 (245)
T ss_dssp SE-------EEEEEETTEEEEE---EECSS-CEEEEEECGGGSSEECCCCEEEEEEHHHHHHHGGGCCT-TCEEEEEECS
T ss_pred CE-------EEEEEECCEEEEE---EECCC-CEEEEEECCCCCCEECCCCCCCEEEHHHHHHHHHHCCC-CCEEEEEECC
T ss_conf 75-------7999826779999---99467-43999936874100036754528748999998745058-9869999759
Q ss_pred CC-EEEE
Q ss_conf 53-0100
Q gi|254780454|r 226 SR-IHLN 231 (385)
Q Consensus 226 ~~-i~~~ 231 (385)
+. +.+.
T Consensus 218 ~~Pl~l~ 224 (245)
T 1rwz_A 218 NYPVRLV 224 (245)
T ss_dssp SSCEEEE
T ss_pred CCCEEEE
T ss_conf 9878999