HHsearch results for GI: 254780454 and protein with PDBid: 1u7b_A
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A*
Probab=98.90 E-value=8.7e-07 Score=58.86 Aligned_cols=220 Identities=14% Similarity=0.251 Sum_probs=148.2
Q ss_pred CCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHH
Q ss_conf 56113554202202300245565210116677617873489998534157666643578753------310000010001
Q gi|254780454|r 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAV 205 (385)
Q Consensus 132 i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l 205 (385)
..+..|+.++.... ....=++|++..++.++ .|.|..|.+.....++...- ++..+-|+.+.+
T Consensus 7 ~~a~~fk~i~~~l~---------~l~~e~~~~~~~~Gi~i--~~mD~s~v~li~~~l~~~~F~~y~~~~~~~igi~~~~l 75 (261)
T 1u7b_A 7 VQGSILKKVLEALK---------DLINEACWDISSSGVNL--QSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSM 75 (261)
T ss_dssp SCTHHHHHHHHHHH---------TTCSEEEEEEETTEEEE--EEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHH---------HHHCEEEEEEECCEEEE--EEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHHHH
T ss_conf 56799999999999---------87563999990896899--99988878999999897889050557768999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCC--CEEEEC--C----EEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHH
Q ss_conf 222210277646433133455--301002--5----0699985126655322101355-566179984899888898874
Q gi|254780454|r 206 GEILRILSSKDSSVKVSLSES--RIHLNI--E----SLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVS 276 (385)
Q Consensus 206 ~el~k~l~~~~~~v~i~~~~~--~i~~~~--~----~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~ 276 (385)
..+.|.+.. ...+.+.+.++ ++.+.. + ...|.-+|++-.-+++. +|+ +++..++++-+.|.++++-+.
T Consensus 76 ~kilk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~f~l~l~d~~~~~~~--ip~~~~~~~i~~~s~~f~~~~~~l~ 152 (261)
T 1u7b_A 76 SKILKCAGN-EDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLG--IPEQEYSCVVKMPSGEFARICRDLS 152 (261)
T ss_dssp HHHHTTSCT-TCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCCCCCCCB--CCCCCCSEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCC--CCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 999963558-9549999836887169999806876226898740346600125--7877755899950899999999997
Q ss_pred HCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEE------------ECCCCEEEEECHHHHHHHHHHCCCCCCCCC
Q ss_conf 10123555302565176599998078732689999989------------628843999638899889873575334663
Q gi|254780454|r 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY------------YNECPMDICFNYKYLLEIIDNISSDEVVDD 344 (385)
Q Consensus 277 i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~------------~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e 344 (385)
.+.+. +.+..+++.+.+++.+ |.|++.-.+.-. -.+++.+..|..+||..+++..... +
T Consensus 153 ~~~d~----v~i~~~~~~~~~~~~g-d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~ls----~ 223 (261)
T 1u7b_A 153 HIGDA----VVISCAKDGVKFSASG-ELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLS----S 223 (261)
T ss_dssp TTCSE----EEEEEETTEEEEEEEE-TTEEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGGC----S
T ss_pred HCCCE----EEEEECCCCEEEEEEE-CCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCCCC----C
T ss_conf 42880----8999818827999972-2654799992477877743126763387403899589999876333689----8
Q ss_pred EEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 38999658987589943776544455566763799832
Q gi|254780454|r 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 345 ~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
.|++++.. ..|+.+.-.-.+ ...-.|.|-|
T Consensus 224 ~V~i~~~~-~~Pl~~~~~~~~-------~g~i~f~lAP 253 (261)
T 1u7b_A 224 TVTLSMSA-DVPLVVEYKIAD-------MGHLKYYLAP 253 (261)
T ss_dssp EEEEEECT-TSCEEEEEEETT-------TEEEEEEECC
T ss_pred EEEEEECC-CCCEEEEEEECC-------CCEEEEEECC
T ss_conf 79999819-988999999289-------8299999967