HHsearch results for GI: 254780454 and protein with PDBid: 1ud9_A

>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=97.95  E-value=0.0009  Score=40.56  Aligned_cols=200  Identities=13%  Similarity=0.152  Sum_probs=117.1

Q ss_pred             EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHHHHHH
Q ss_conf             599999999987502037888610133899998997999996782--899999977------752680799949987788
Q gi|254780454|r    6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHLLYDI   77 (385)
Q Consensus         6 ~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~l~~i   77 (385)
                      +-+.|...++.+.+++         ..+.+++.++++.++|.|..  .-+...++.      +++++-.+.|+-..|..+
T Consensus         7 ~a~~fk~i~~~l~~l~---------~e~~~~~~~~Gi~i~~mD~s~v~lv~l~l~~~~F~~Y~~~~~~~igi~~~~l~ki   77 (245)
T 1ud9_A            7 DVRDLKAIIQALLKLV---------DEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKL   77 (245)
T ss_dssp             CHHHHHHHHHHHHHHC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHH
T ss_conf             8899999999999875---------4599998089679999978758999999887879310457778989998998888


Q ss_pred             HHCCCCCCCEEEEEECCCCEEEEEEEC-CCEEEEECCCCCCC-CCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCC
Q ss_conf             740777773047773367508999867-82024303662114-3212332430450561135542022023002455652
Q gi|254780454|r   78 VRKLQDGAQISFFKENELGTEVNISHG-DSNFYLQSFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY  155 (385)
Q Consensus        78 ik~L~~~~~i~~~~~~~~~~~i~i~~~-~~~~~l~~~~~~~f-P~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~  155 (385)
                      +|.+..+..+.+..+++....+.+..+ +..|+++.++.+.- ..+|..+....+.+++..|+++++...-. + |    
T Consensus        78 lk~~~~~d~l~l~~~~~~~l~~~~~~~~~~~~~l~~id~~~~~~~~p~~e~~~~i~~~s~~f~~~~~~l~~~-~-d----  151 (245)
T 1ud9_A           78 LKAAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEV-A-D----  151 (245)
T ss_dssp             HTTCCSCCCEEEEEEETTEEEEEECSSSCEEEEEECCCCCCCCCC---CCCSEEEEEEHHHHHHHHHHHHHH-C-S----
T ss_pred             HHHCCCCCEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHCC-C-C----
T ss_conf             851689967999965897059999823335897033234544577777676679997899999999887434-8-6----


Q ss_pred             CEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC------CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             101166776178734899985341576666435787------533100000100012222102776464331334553
Q gi|254780454|r  156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR  227 (385)
Q Consensus       156 ~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~------~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~  227 (385)
                         -+.+..+++  ++.+.+...... ......+..      .+......-..+.+..+.|...- .+.|+++++.+.
T Consensus       152 ---~i~i~~~~~--~i~~~~~gd~~~-~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l-s~~V~i~~~~~~  222 (245)
T 1ud9_A          152 ---TLLISGNEE--KVVVKGEGENKV-EVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKL-SDYVKVAFADQK  222 (245)
T ss_dssp             ---EEEEEECSS--EEEEEESSSSCC-CEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEECTTS
T ss_pred             ---EEEEEEECC--EEEEEEECCCCE-EEEECCCCCCEEEEEEECCCCEEEHHHHHHHHHHHCCC-CCEEEEEECCCC
T ss_conf             ---799999578--799997147522-68980689841688870322246468789999843468-986999974997