HHsearch results for GI: 254780454 and protein with PDBid: 1ud9_A
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=97.95 E-value=0.0009 Score=40.56 Aligned_cols=200 Identities=13% Similarity=0.152 Sum_probs=117.1
Q ss_pred EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHHHHHH
Q ss_conf 599999999987502037888610133899998997999996782--899999977------752680799949987788
Q gi|254780454|r 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHLLYDI 77 (385)
Q Consensus 6 ~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~l~~i 77 (385)
+-+.|...++.+.+++ ..+.+++.++++.++|.|.. .-+...++. +++++-.+.|+-..|..+
T Consensus 7 ~a~~fk~i~~~l~~l~---------~e~~~~~~~~Gi~i~~mD~s~v~lv~l~l~~~~F~~Y~~~~~~~igi~~~~l~ki 77 (245)
T 1ud9_A 7 DVRDLKAIIQALLKLV---------DEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKL 77 (245)
T ss_dssp CHHHHHHHHHHHHHHC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 8899999999999875---------4599998089679999978758999999887879310457778989998998888
Q ss_pred HHCCCCCCCEEEEEECCCCEEEEEEEC-CCEEEEECCCCCCC-CCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCC
Q ss_conf 740777773047773367508999867-82024303662114-3212332430450561135542022023002455652
Q gi|254780454|r 78 VRKLQDGAQISFFKENELGTEVNISHG-DSNFYLQSFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 (385)
Q Consensus 78 ik~L~~~~~i~~~~~~~~~~~i~i~~~-~~~~~l~~~~~~~f-P~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~ 155 (385)
+|.+..+..+.+..+++....+.+..+ +..|+++.++.+.- ..+|..+....+.+++..|+++++...-. + |
T Consensus 78 lk~~~~~d~l~l~~~~~~~l~~~~~~~~~~~~~l~~id~~~~~~~~p~~e~~~~i~~~s~~f~~~~~~l~~~-~-d---- 151 (245)
T 1ud9_A 78 LKAAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEV-A-D---- 151 (245)
T ss_dssp HTTCCSCCCEEEEEEETTEEEEEECSSSCEEEEEECCCCCCCCCC---CCCSEEEEEEHHHHHHHHHHHHHH-C-S----
T ss_pred HHHCCCCCEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHCC-C-C----
T ss_conf 851689967999965897059999823335897033234544577777676679997899999999887434-8-6----
Q ss_pred CEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC------CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 101166776178734899985341576666435787------533100000100012222102776464331334553
Q gi|254780454|r 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 156 ~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~------~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
-+.+..+++ ++.+.+...... ......+.. .+......-..+.+..+.|...- .+.|+++++.+.
T Consensus 152 ---~i~i~~~~~--~i~~~~~gd~~~-~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l-s~~V~i~~~~~~ 222 (245)
T 1ud9_A 152 ---TLLISGNEE--KVVVKGEGENKV-EVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKL-SDYVKVAFADQK 222 (245)
T ss_dssp ---EEEEEECSS--EEEEEESSSSCC-CEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEECTTS
T ss_pred ---EEEEEEECC--EEEEEEECCCCE-EEEECCCCCCEEEEEEECCCCEEEHHHHHHHHHHHCCC-CCEEEEEECCCC
T ss_conf ---799999578--799997147522-68980689841688870322246468789999843468-986999974997