HHsearch results for GI: 254780454 and protein with PDBid: 1vpk_A

Probab=100.00  E-value=0  Score=588.70  Aligned_cols=363  Identities=26%  Similarity=0.485  Sum_probs=340.1

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH
Q ss_conf             9589859999999998750203788861013389999899799999678289999997-775268079994998778874
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR   79 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik   79 (385)
                      |||+|++++|.++|+++++++++|++.|||+|+||++++++|+++|||++++++++++ ++++++|+++|||+.|.+++|
T Consensus        13 Mk~~i~k~~L~~~l~~~~~~i~~~~~~piL~~ilie~~~~~l~l~atd~e~~i~~~i~~~~i~~~G~~~vpak~l~~ivk   92 (378)
T 1vpk_A           13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEISGEARFVVPGDVIQKMVK   92 (378)
T ss_dssp             EEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEEEECEEEEEEC-CHHHHHT
T ss_pred             EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEECCEECCCEEEEEEHHHHHHHHH
T ss_conf             79999899999999998755277987488759899998999999998884599999963166155689986799999986


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf             07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG  159 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G  159 (385)
                      +||++. +.+..+   ++++.|++|+++|+|+++++++||.+|..+...+++++++.|+++|++|.||+++|++||+|+|
T Consensus        93 ~l~~~~-i~l~~~---~~~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~d~~r~~L~G  168 (378)
T 1vpk_A           93 VLPDEI-TELSLE---GDALVISSGSTVFRITTMPADEFPEITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNG  168 (378)
T ss_dssp             TCCSSE-EEEEEE---TTEEEEEETTEEEEEECBCCTTSCCCCCCCSSEEEEEEHHHHHHHHHHHGGGSCCCTTCTTTSE
T ss_pred             HCCCCE-EEEEEE---CCEEEEECCCEEEEEECCCHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHEEE
T ss_conf             278752-699940---8899995375089996148233343223467715860899999999767875174001224422


Q ss_pred             EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCEEEECCEEEEE
Q ss_conf             66776178734899985341576666435787533100000100012222102776-46433133455301002506999
Q gi|254780454|r  160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS  238 (385)
Q Consensus       160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~-~~~v~i~~~~~~i~~~~~~~~~~  238 (385)
                      |+|+++++  ++++|||||||||+++.+.+..  ...++++|+|.+.++.|++.+. ++.+.++.+++++.|.+++++++
T Consensus       169 v~~~~~~~--~l~~vATDg~RLa~~~~~~~~~--~~~~~iip~k~l~~l~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (378)
T 1vpk_A          169 VFWELHKN--LLRLVASDGFRLALAEEQIENE--EEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV  244 (378)
T ss_dssp             EEEEEETT--EEEEEEECSSEEEEEEEECCCC--SCEEEEEEHHHHHHHHHHHHTCCCSEEEEEECSSEEEEECSSEEEE
T ss_pred             EEEEECCC--EEEEEECCCCCEEEEECCCCCC--CCCCEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCEEEE
T ss_conf             89997187--6999983797168875035776--6530475088999998621245673499963011027862555999


Q ss_pred             EEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf             85126655322101355566179984899888898874101235553025651765999980787326899999896288
Q gi|254780454|r  239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC  318 (385)
Q Consensus       239 srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~  318 (385)
                      ||||+|+||||+++||+++++++.++|.+|+++++|++++++++.+.+.|.++++.+++++.++|.|++.|+++|+|+|+
T Consensus       245 srli~g~yP~y~~vip~~~~~~~~i~r~~l~~al~r~~~~~~~~~~~v~l~~~~~~l~l~~~~~e~g~~~e~i~~~~~Ge  324 (378)
T 1vpk_A          245 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEVQKEGE  324 (378)
T ss_dssp             EECCSSCCCCGGGGSCSCCSEEEEEEHHHHHHHHHHHHHHHTTTTCCEEEEECSSEEEEEEEETTTEEEEEEEECEEEEC
T ss_pred             EEECCCCCCCHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEEEECCC
T ss_conf             98527776577571566663389983166787898764410357662589704881799975897621799998785288


Q ss_pred             CEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             4399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r  319 PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI  385 (385)
Q Consensus       319 ~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri  385 (385)
                      +++|+||++||+|+|+++++     ++|.|+++++.+|++|++.++         ++|+||||||||
T Consensus       325 ~~~i~fN~~yL~d~L~~~~~-----e~V~i~~~~~~~p~~i~~~~~---------~~~~~lvMPvRi  377 (378)
T 1vpk_A          325 DLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQINPLDI---------SGYLYIVMPIRL  377 (378)
T ss_dssp             CEEEEECHHHHHHHHHHCCS-----SEEEEEESCTTSCEEEEETTC---------CSEEEEECCBCC
T ss_pred             CEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf             78999989999999860899-----879999858998689974888---------952899983771