HHsearch results for GI: 254780454 and protein with PDBid: 1vpk_A
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=99.54 E-value=4.1e-12 Score=91.15 Aligned_cols=213 Identities=17% Similarity=0.294 Sum_probs=146.0
Q ss_pred EEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHH
Q ss_conf 04505611355420220230024556521011667761787348999853415766664357875331000001000122
Q gi|254780454|r 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207 (385)
Q Consensus 128 ~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~e 207 (385)
=.|.++.+.|.++|..+..++++..+.|+|.||+++..++ .|++.|||+-.-....++. ....++..++||+|.+.+
T Consensus 13 Mk~~i~k~~L~~~l~~~~~~i~~~~~~piL~~ilie~~~~--~l~l~atd~e~~i~~~i~~-~~i~~~G~~~vpak~l~~ 89 (378)
T 1vpk_A 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDG--NFYICATDLETGVKATVNA-AEISGEARFVVPGDVIQK 89 (378)
T ss_dssp EEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETT--EEEEEEECSSEEEEEECCC-SEEEECEEEEEEC-CHHH
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECC--EEEEEEECCCEEEEEEEEC-CEECCCEEEEEEHHHHHH
T ss_conf 7999989999999999875527798748875989999899--9999998884599999963-166155689986799999
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEEC-CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-CCCC-
Q ss_conf 22102776464331334553010025069998512-66553221013555661799848998888988741012-3555-
Q gi|254780454|r 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQ- 284 (385)
Q Consensus 208 l~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi-~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~-~~~~- 284 (385)
+.|-+++ +.+.+...++++.++.++..+....+ ...||.+... +....+.++...|.++++++...++ +..+
T Consensus 90 ivk~l~~--~~i~l~~~~~~l~I~~g~~~~~l~~~~~~~fP~~~~~---~~~~~~~i~~~~l~~~i~~v~~a~s~d~~r~ 164 (378)
T 1vpk_A 90 MVKVLPD--EITELSLEGDALVISSGSTVFRITTMPADEFPEITPA---ESGITFEVDTSLLEEMVEKVIFAAAKDEFMR 164 (378)
T ss_dssp HHTTCCS--SEEEEEEETTEEEEEETTEEEEEECBCCTTSCCCCCC---CSSEEEEEEHHHHHHHHHHHGGGSCCCTTCT
T ss_pred HHHHCCC--CEEEEEEECCEEEEECCCEEEEEECCCHHHCCCCCCC---CCCCEEECCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9862787--5269994088999953750899961482333432234---6771586089999999976787517400122
Q ss_pred ---CCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf ---30256517659999807873268999998962884399963889988987357533466338999658
Q gi|254780454|r 285 ---AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 (385)
Q Consensus 285 ---~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~ 352 (385)
+|.|.++++.+++.+.+. +-=+.-.++.. ...+..+....+.+.+..+.+.... .+.+.+...+
T Consensus 165 ~L~Gv~~~~~~~~l~~vATDg-~RLa~~~~~~~-~~~~~~~iip~k~l~~l~k~l~~~~--~~~~~~~~~~ 231 (378)
T 1vpk_A 165 NLNGVFWELHKNLLRLVASDG-FRLALAEEQIE-NEEEASFLLSLKSMKEVQNVLDNTT--EPTITVRYDG 231 (378)
T ss_dssp TTSEEEEEEETTEEEEEEECS-SEEEEEEEECC-CCSCEEEEEEHHHHHHHHHHHHTCC--CSEEEEEECS
T ss_pred HEEEEEEEECCCEEEEEECCC-CCEEEEECCCC-CCCCCCEEEEHHHHHHHHHHHCCCC--CCEEEEEEEC
T ss_conf 442289997187699998379-71688750357-7665304750889999986212456--7349996301