HHsearch results for GI: 254780454 and protein with PDBid: 2avt_A
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=100.00 E-value=0 Score=578.22 Aligned_cols=367 Identities=23% Similarity=0.402 Sum_probs=338.5
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE-------ECCCCEEEEEHHH
Q ss_conf 958985999999999875020378886101338999989979999967828999999777-------5268079994998
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVCGSITVSAHL 73 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~-------i~~~G~~~v~a~~ 73 (385)
|||+|+|++|.++|+++++++++|++.|||+|+||++.+++|+++|||++++++++++++ +.++|+++|||+.
T Consensus 2 Mkf~i~k~~l~~~l~~~~~~i~~k~~~piL~~ilie~~~~~l~l~atd~~~~i~~~i~~~~~~~~~~v~~~G~~~v~~k~ 81 (378)
T 2avt_A 2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEASF 81 (378)
T ss_dssp CEEEEEHHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEEC-----CEEEEECEEEEEEHHH
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEECCCCCEEEECEEEEHHHHH
T ss_conf 79999799999999999746178987278728899999999999998574699999981230568358404244024899
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCC
Q ss_conf 77887407777730477733675089998678202430366211432123324304505611355420220230024556
Q gi|254780454|r 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI 153 (385)
Q Consensus 74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~ 153 (385)
|.+++|+||++.. .+...+ ++.+.|++|+++|+|+++|+++||.+|..+...++.++++.|+++|++|.||+++|++
T Consensus 82 l~~iik~l~~~~i-~~~~~e--~~~l~I~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~d~~ 158 (378)
T 2avt_A 82 FINIISSLPDISI-NVKEIE--QHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQES 158 (378)
T ss_dssp HHHHHHHCSSSEE-EEEEET--TTEEEEEETTEEEEEECBCGGGSCCCCCCCCSSCEEEEHHHHHHHHHHHGGGSCCCTT
T ss_pred HHHHHHCCCCCEE-EEEECC--CCEEEEEECCCEEEECCCCHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHEEECCCCH
T ss_conf 9999863898538-999647--9789998256358875655300886334566733898899999998542142047702
Q ss_pred CCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 52101166776178734899985341576666435787533100000100012222102776464331334553010025
Q gi|254780454|r 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 (385)
Q Consensus 154 r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~ 233 (385)
||+|+||+|++.++. .+.+||||||||+.++.+..... ..+.+++|++.+.++.+++.+.++++.++++++++.|.++
T Consensus 159 r~~l~Gv~~~~~~~~-~l~~vatD~~rl~~~~~~~~~~~-~~~~~iip~~~~~~~~~l~~~~~~~v~i~~~~~~~~~~~~ 236 (378)
T 2avt_A 159 RPILTGVHIVLSNHK-DFKAVATDSHRMSQRLITLDNTS-ADFMVVLPSKSLREFSAVFTDDIETVEVFFSPSQILFRSE 236 (378)
T ss_dssp SGGGGEEEEEEETTT-EEEEEEECSSEEEEEEEECSSCC-CCEEEEEEHHHHHHHHHHSCTTCCEEEEEECSSEEEEECS
T ss_pred HHHHCCEEEEEECCC-CEEEEECCCCHHHEEEECCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEC
T ss_conf 444404479992684-07999958873232550123544-3211244313699987650356553267605747999989
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCC-CCCEEEEECCEEEEEECCCCCEEEEEEEE
Q ss_conf 06999851266553221013555661799848998888988741012355-53025651765999980787326899999
Q gi|254780454|r 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNPDMGKAIESMN 312 (385)
Q Consensus 234 ~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~-~~i~l~~~~~~l~i~~~~~e~g~~~e~i~ 312 (385)
+++++|||++|+||||+++||++++++++++|++|++||+|+++++++.. ..+.|+++++.+++++.++|.|++.|+++
T Consensus 237 ~~~~~srli~g~fP~y~~vip~~~~~~~~v~r~~l~~al~Rv~~~~~~~~~~~i~l~~~~~~l~l~~~~~d~g~~~e~i~ 316 (378)
T 2avt_A 237 HISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDLD 316 (378)
T ss_dssp SEEEEEECCCSCCCCCGGGSCCCCSEEEEEEHHHHHHHHHHHHHHHTTSTTCCEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred CEEEEEECCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEE
T ss_conf 88999740567999745504556872588647888999976434022224575134413746999966876565048973
Q ss_pred -EEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf -8962884399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r 313 -VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 313 -~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
+.|+|++++|+||++||+|+|+++++ ++|.|+|.++.+|++|++.+++ .+|+|||||||+
T Consensus 317 ~~~~~Ge~~~i~fN~~yL~d~L~~~~~-----~~v~i~~~~~~~p~~i~~~~~~--------~~~~~liMPvr~ 377 (378)
T 2avt_A 317 IVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLSPVRPFTLTPGDEE--------ESFIQLITPVRT 377 (378)
T ss_dssp CSEEEECCEEEEECHHHHHHHHHTCCS-----SEEEEEECCTTSCEEEEETTCC--------SEEEEEECCCCC
T ss_pred ECCCCCCCEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEEECCCC--------CCEEEEEEEEEC
T ss_conf 101358967999889999999855899-----8799997689997799807988--------746999910315