HHsearch results for GI: 254780454 and protein with PDBid: 2avt_A

>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=100.00  E-value=0  Score=578.22  Aligned_cols=367  Identities=23%  Similarity=0.402  Sum_probs=338.5

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE-------ECCCCEEEEEHHH
Q ss_conf             958985999999999875020378886101338999989979999967828999999777-------5268079994998
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVCGSITVSAHL   73 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~-------i~~~G~~~v~a~~   73 (385)
                      |||+|+|++|.++|+++++++++|++.|||+|+||++.+++|+++|||++++++++++++       +.++|+++|||+.
T Consensus         2 Mkf~i~k~~l~~~l~~~~~~i~~k~~~piL~~ilie~~~~~l~l~atd~~~~i~~~i~~~~~~~~~~v~~~G~~~v~~k~   81 (378)
T 2avt_A            2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEASF   81 (378)
T ss_dssp             CEEEEEHHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEEC-----CEEEEECEEEEEEHHH
T ss_pred             EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEECCCCCEEEECEEEEHHHHH
T ss_conf             79999799999999999746178987278728899999999999998574699999981230568358404244024899


Q ss_pred             HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCC
Q ss_conf             77887407777730477733675089998678202430366211432123324304505611355420220230024556
Q gi|254780454|r   74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI  153 (385)
Q Consensus        74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~  153 (385)
                      |.+++|+||++.. .+...+  ++.+.|++|+++|+|+++|+++||.+|..+...++.++++.|+++|++|.||+++|++
T Consensus        82 l~~iik~l~~~~i-~~~~~e--~~~l~I~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~d~~  158 (378)
T 2avt_A           82 FINIISSLPDISI-NVKEIE--QHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQES  158 (378)
T ss_dssp             HHHHHHHCSSSEE-EEEEET--TTEEEEEETTEEEEEECBCGGGSCCCCCCCCSSCEEEEHHHHHHHHHHHGGGSCCCTT
T ss_pred             HHHHHHCCCCCEE-EEEECC--CCEEEEEECCCEEEECCCCHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHEEECCCCH
T ss_conf             9999863898538-999647--9789998256358875655300886334566733898899999998542142047702


Q ss_pred             CCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
Q ss_conf             52101166776178734899985341576666435787533100000100012222102776464331334553010025
Q gi|254780454|r  154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE  233 (385)
Q Consensus       154 r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~  233 (385)
                      ||+|+||+|++.++. .+.+||||||||+.++.+..... ..+.+++|++.+.++.+++.+.++++.++++++++.|.++
T Consensus       159 r~~l~Gv~~~~~~~~-~l~~vatD~~rl~~~~~~~~~~~-~~~~~iip~~~~~~~~~l~~~~~~~v~i~~~~~~~~~~~~  236 (378)
T 2avt_A          159 RPILTGVHIVLSNHK-DFKAVATDSHRMSQRLITLDNTS-ADFMVVLPSKSLREFSAVFTDDIETVEVFFSPSQILFRSE  236 (378)
T ss_dssp             SGGGGEEEEEEETTT-EEEEEEECSSEEEEEEEECSSCC-CCEEEEEEHHHHHHHHHHSCTTCCEEEEEECSSEEEEECS
T ss_pred             HHHHCCEEEEEECCC-CEEEEECCCCHHHEEEECCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEC
T ss_conf             444404479992684-07999958873232550123544-3211244313699987650356553267605747999989


Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCC-CCCEEEEECCEEEEEECCCCCEEEEEEEE
Q ss_conf             06999851266553221013555661799848998888988741012355-53025651765999980787326899999
Q gi|254780454|r  234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNPDMGKAIESMN  312 (385)
Q Consensus       234 ~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~-~~i~l~~~~~~l~i~~~~~e~g~~~e~i~  312 (385)
                      +++++|||++|+||||+++||++++++++++|++|++||+|+++++++.. ..+.|+++++.+++++.++|.|++.|+++
T Consensus       237 ~~~~~srli~g~fP~y~~vip~~~~~~~~v~r~~l~~al~Rv~~~~~~~~~~~i~l~~~~~~l~l~~~~~d~g~~~e~i~  316 (378)
T 2avt_A          237 HISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDLD  316 (378)
T ss_dssp             SEEEEEECCCSCCCCCGGGSCCCCSEEEEEEHHHHHHHHHHHHHHHTTSTTCCEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred             CEEEEEECCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEE
T ss_conf             88999740567999745504556872588647888999976434022224575134413746999966876565048973


Q ss_pred             -EEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             -8962884399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r  313 -VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI  385 (385)
Q Consensus       313 -~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri  385 (385)
                       +.|+|++++|+||++||+|+|+++++     ++|.|+|.++.+|++|++.+++        .+|+|||||||+
T Consensus       317 ~~~~~Ge~~~i~fN~~yL~d~L~~~~~-----~~v~i~~~~~~~p~~i~~~~~~--------~~~~~liMPvr~  377 (378)
T 2avt_A          317 IVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLSPVRPFTLTPGDEE--------ESFIQLITPVRT  377 (378)
T ss_dssp             CSEEEECCEEEEECHHHHHHHHHTCCS-----SEEEEEECCTTSCEEEEETTCC--------SEEEEEECCCCC
T ss_pred             ECCCCCCCEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEEECCCC--------CCEEEEEEEEEC
T ss_conf             101358967999889999999855899-----8799997689997799807988--------746999910315