HHsearch results for GI: 254780454 and protein with PDBid: 2avt_A
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=99.44 E-value=8.3e-11 Score=83.26 Aligned_cols=213 Identities=12% Similarity=0.181 Sum_probs=100.5
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECC-EEEEEEECCEEEEEEEEEEEE-CCCCEEEEEHHHHHHHHH
Q ss_conf 589859999999998750203788861013389999899-799999678289999997775-268079994998778874
Q gi|254780454|r 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~-~l~l~atd~~~~i~~~i~~~i-~~~G~~~v~a~~l~~iik 79 (385)
.+.++...|.++|..+..+++...+.|+|.|++++..++ .+.+.|||+-.-....++... .....+++|++.+.++.+
T Consensus 134 ~~~i~~~~l~~~i~~v~~a~s~d~~r~~l~Gv~~~~~~~~~l~~vatD~~rl~~~~~~~~~~~~~~~~iip~~~~~~~~~ 213 (378)
T 2avt_A 134 PLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTSADFMVVLPSKSLREFSA 213 (378)
T ss_dssp CEEEEHHHHHHHHHHHGGGSCCCTTSGGGGEEEEEEETTTEEEEEEECSSEEEEEEEECSSCCCCEEEEEEHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHEEECCCCHHHHHCCEEEEEECCCCEEEEECCCCHHHEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 38988999999985421420477024444044799926840799995887323255012354432112443136999876
Q ss_pred CCCCCC-CEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCC---CCCCEEEECCCHHHHHHHCCEEEECCCCCCCC
Q ss_conf 077777-30477733675089998678202430366211432123---32430450561135542022023002455652
Q gi|254780454|r 80 KLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE---EEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 (385)
Q Consensus 80 ~L~~~~-~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~---~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~ 155 (385)
-+.+.. .+.+..+ +.++.+.+++..+....++. .||.+.. .+....+.++...|.++++|+.-.++ +...
T Consensus 214 l~~~~~~~v~i~~~---~~~~~~~~~~~~~~srli~g-~fP~y~~vip~~~~~~~~v~r~~l~~al~Rv~~~~~-~~~~- 287 (378)
T 2avt_A 214 VFTDDIETVEVFFS---PSQILFRSEHISFYTRLLEG-NYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISN-ATQN- 287 (378)
T ss_dssp HSCTTCCEEEEEEC---SSEEEEECSSEEEEEECCCS-CCCCCGGGSCCCCSEEEEEEHHHHHHHHHHHHHHHT-TSTT-
T ss_pred HHCCCCCCEEEEEC---CCEEEEEECCEEEEEECCCC-CCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-CCCC-
T ss_conf 50356553267605---74799998988999740567-999745504556872588647888999976434022-2245-
Q ss_pred CEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 1011667761787348999853415766664357875331000001000122221027764643313345
Q gi|254780454|r 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225 (385)
Q Consensus 156 ~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~ 225 (385)
.-+.+.+.++..++.....|.-+ +.-+.+.....+++..+-.-.+.|.+.++.+.+ ++|.+.+.+
T Consensus 288 --~~i~l~~~~~~l~l~~~~~d~g~-~~e~i~~~~~~Ge~~~i~fN~~yL~d~L~~~~~--~~v~i~~~~ 352 (378)
T 2avt_A 288 --GTVKLEITQNHISAHVNSPEVGK-VNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS--ETVKIHFLS 352 (378)
T ss_dssp --CCEEEEEETTEEEEEEEETTTEE-EEEECCCSEEEECCEEEEECHHHHHHHHHTCCS--SEEEEEECC
T ss_pred --CCCEEEECCCEEEEEECCCCCCC-CEEEEEECCCCCCCEEEEECHHHHHHHHHCCCC--CEEEEEECC
T ss_conf --75134413746999966876565-048973101358967999889999999855899--879999768