HHsearch results for GI: 254780454 and protein with PDBid: 2ijx_A

>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotrimer, DNA binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus P2} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=98.44  E-value=6.9e-05  Score=47.33  Aligned_cols=204  Identities=14%  Similarity=0.191  Sum_probs=125.2

Q ss_pred             CEEEE-EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEH
Q ss_conf             95898-599999999987502037888610133899998997999996782--899999977------752680799949
Q gi|254780454|r    1 MKITV-ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSA   71 (385)
Q Consensus         1 Mk~~i-~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a   71 (385)
                      ||+.. +-+.|...++.+++++         ..+.+++..+++.+.+.|..  .-+...++.      +++++-.+.|+-
T Consensus         1 m~~~~~~~~~fk~i~~~l~~l~---------~e~~~~~~~~Gi~i~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~igi~~   71 (244)
T 2ijx_A            1 MKVVYDDVRVLKDIIQALARLV---------DEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNT   71 (244)
T ss_dssp             CEEEESCHHHHHHHHHHHHHHC---------SEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEH
T ss_pred             CEEEECCHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEECCCCCEEEEEEH
T ss_conf             9799857899999999999875---------8299999389789999989968999999887769333237777989999


Q ss_pred             HHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEC--CCEEEEECCCCCCCC-CCCCCCCCEEEECCCHHHHHHHCCEEEEC
Q ss_conf             987788740777773047773367508999867--820243036621143-21233243045056113554202202300
Q gi|254780454|r   72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHG--DSNFYLQSFPESEFP-STKEEEYVYSFELASSVLKNLVERTHFAM  148 (385)
Q Consensus        72 ~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~--~~~~~l~~~~~~~fP-~~~~~~~~~~~~i~~~~l~~~i~~t~~a~  148 (385)
                      +.|..++|.+.++..+.+..+++. ..+....+  ...|.++.++.+..+ ..|..+....+.+++..|+++++...- .
T Consensus        72 ~~l~kilk~~~~~d~l~l~~~~~~-~~~i~~~~~~~~~~~l~l~d~~~~~~~~p~~~~~~~i~~~s~~f~~~ik~l~~-~  149 (244)
T 2ijx_A           72 QYLMKILKVAKRKEAIEIASESPD-SVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVST-V  149 (244)
T ss_dssp             HHHHHHHTTCCSSCEEEEEEEETT-EEEEEEESSSEEEEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHCCCCCCEEEEEEECCC-CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHH-C
T ss_conf             999999844688974999993598-54999706742799961356653568998866637998249999999999872-1


Q ss_pred             CCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC------CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             2455652101166776178734899985341576666435787------5331000001000122221027764643313
Q gi|254780454|r  149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSSKDSSVKVS  222 (385)
Q Consensus       149 s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~------~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~  222 (385)
                      + |.       +.+..+++...+.   ++|.-=+......+..      ...+.....+.+.+..+.|...- .+.|++.
T Consensus       150 ~-d~-------i~i~~~~~~i~f~---~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~yl~~~~k~~~l-s~~v~i~  217 (244)
T 2ijx_A          150 T-DN-------VVVEGHEDRILIK---AEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKL-SDYVKIS  217 (244)
T ss_dssp             C-SE-------EEEEEETTEEEEE---ETTCTTSEEEEETTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEE
T ss_pred             C-CE-------EEEEEECCEEEEE---EECCCCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCC-CCEEEEE
T ss_conf             9-87-------9999937569999---973761479980589860788750332453138999998714368-9869999


Q ss_pred             CCCCC
Q ss_conf             34553
Q gi|254780454|r  223 LSESR  227 (385)
Q Consensus       223 ~~~~~  227 (385)
                      ++.++
T Consensus       218 ~~~~~  222 (244)
T 2ijx_A          218 FGNQK  222 (244)
T ss_dssp             EETTE
T ss_pred             ECCCC
T ss_conf             74997