HHsearch results for GI: 254780454 and protein with PDBid: 3a1j_A
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=97.84 E-value=0.00074 Score=41.08 Aligned_cols=135 Identities=10% Similarity=0.005 Sum_probs=89.8
Q ss_pred CEEEEEH---HHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCC----
Q ss_conf 9589859---9999999987502037888610133899998997999996782--899999977------752680----
Q gi|254780454|r 1 MKITVER---SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCG---- 65 (385)
Q Consensus 1 Mk~~i~~---~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G---- 65 (385)
||++++. +.|.++++..+++. ..+.|++.+++|.+.|-|.. ..+...++. +++.++
T Consensus 1 m~~~~~~~~~k~f~~~i~~l~~i~---------~ev~~~~~~~gl~l~a~d~s~~al~~~~l~~~~F~~Y~~~~~~~~~~ 71 (266)
T 3a1j_A 1 MKCLVTGGNVKVLGKAVHSLSRIG---------DELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLL 71 (266)
T ss_dssp CEEEEETHHHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCC
T ss_pred CEEEECHHHHHHHHHHHHHHHHHC---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEEECCCCCCCCE
T ss_conf 989992378899999999999741---------82999994785899999988879999998767472787568887557
Q ss_pred EEEEEHHHHHHHHHCCCCCC----CEEEEEECCCCEEEEE--EECCC---EEEEECCCCCC-CCCCCCCCCCEEEECCCH
Q ss_conf 79994998778874077777----3047773367508999--86782---02430366211-432123324304505611
Q gi|254780454|r 66 SITVSAHLLYDIVRKLQDGA----QISFFKENELGTEVNI--SHGDS---NFYLQSFPESE-FPSTKEEEYVYSFELASS 135 (385)
Q Consensus 66 ~~~v~a~~l~~iik~L~~~~----~i~~~~~~~~~~~i~i--~~~~~---~~~l~~~~~~~-fP~~~~~~~~~~~~i~~~ 135 (385)
.+.++.+.+..++|.+.+.. .+....+++ ...+.+ .+..+ +|.|+.++.+. -|.+|..+....+.+++.
T Consensus 72 ~~~v~~k~l~~ilk~~~~~~~~~~~~~l~~~~~-~~~l~i~~~~~~~~~k~~~l~l~d~~~~~~~~p~~~~~~~i~~~s~ 150 (266)
T 3a1j_A 72 RCKILMKSFLSVFRSLAMLEKTVEKCCISLNGR-SSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPAR 150 (266)
T ss_dssp CEEEEHHHHHHHHCCHHHHHHHEEEEEEECCTT-CSEEEEEEEEGGGCEEEEEEECEECCCCCCCCCGGGCSEEEEEEHH
T ss_pred EEEEEHHHHHHHHHHCCCCCCCCEEEEEEECCC-CCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECHH
T ss_conf 987648999998620124676423999996489-8559999905788179999653046644577880008679997689
Q ss_pred HHHHHHCCEE
Q ss_conf 3554202202
Q gi|254780454|r 136 VLKNLVERTH 145 (385)
Q Consensus 136 ~l~~~i~~t~ 145 (385)
.|+++++.-.
T Consensus 151 ~f~~~~~~~~ 160 (266)
T 3a1j_A 151 VLGEAVLPFS 160 (266)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHHHH
T ss_conf 9999999755