HHsearch results for GI: 254780454 and protein with PDBid: 3a1j_C
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=95.96 E-value=0.071 Score=29.05 Aligned_cols=184 Identities=10% Similarity=0.093 Sum_probs=96.0
Q ss_pred CEEEEEEECCEEEEEEECC-EEEEEEEEEEE------E-CCCCEEEEEHHHHHHHHHCCCCCCC------EEEEEECCCC
Q ss_conf 3389999899799999678-28999999777------5-2680799949987788740777773------0477733675
Q gi|254780454|r 31 CHVLLQANDGLLEIKASGP-EIEITGAIPAS------V-DVCGSITVSAHLLYDIVRKLQDGAQ------ISFFKENELG 96 (385)
Q Consensus 31 ~~ilie~~~~~l~l~atd~-~~~i~~~i~~~------i-~~~G~~~v~a~~l~~iik~L~~~~~------i~~~~~~~~~ 96 (385)
..+.+++.++++.++.-+. -..+...++.+ + +++-++.|+-..|..+++....+.. +.+...++ +
T Consensus 26 d~~~~~~~~~Gi~i~~d~s~v~l~~~~L~~~~F~~Y~~~~~~~~~ginl~~l~kiL~~~~~~d~~~~~~~~~i~~~~~-~ 104 (263)
T 3a1j_C 26 EHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGY-G 104 (263)
T ss_dssp SEEEEEEETTEEEEEEEETTTEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHHHHTTTCSCCCTTCCCEEEEEECST-T
T ss_pred CEEEEEECCCEEEEEEECCCEEEEEEEECHHHCCEEEECCCCEEEEEEHHHHHHHHHHCCCCCCCCCEEEEEEEECCC-C
T ss_conf 369999968928999978968999999998999418977975499986899999997436787655305899997599-9
Q ss_pred EE--EEEEECC--CEEEEECCCCCCCCC--CCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCE
Q ss_conf 08--9998678--202430366211432--12332430450561135542022023002455652101166776178734
Q gi|254780454|r 97 TE--VNISHGD--SNFYLQSFPESEFPS--TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 (385)
Q Consensus 97 ~~--i~i~~~~--~~~~l~~~~~~~fP~--~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~ 170 (385)
.. +.++.++ .+|.++.+++++-+. +|..+....+.++++.|+++++... ..+ |. +.+....+...
T Consensus 105 ~~l~i~~e~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~i~~~S~~l~~~i~dl~-~~~-d~-------v~i~~~~~~~~ 175 (263)
T 3a1j_C 105 YPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELD-MTS-EV-------LQITMSPDKPY 175 (263)
T ss_dssp CCEEEEEEETTEEEEEEECCBCCCCCCCCCCCTTTEEEEEEEEGGGGHHHHHTSC-TTS-SE-------EEEEECSSSSS
T ss_pred CEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHH-HCC-CE-------EEEEEECCCCE
T ss_conf 8799999449908999998556675334588864541899998999999999887-269-84-------99999838766
Q ss_pred EEEEEECCEEEEEEEEECCCCCC--------CCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 89998534157666643578753--------3100000100012222102776464331334553
Q gi|254780454|r 171 LCAVATDGHRLAVAEVDIVAQIA--------KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 171 l~~vaTDg~RLa~~~~~~~~~~~--------~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
+.+ .++|.. ...+..++...+ +.....-+.+.|..+.|...-. ..|+|.++.+.
T Consensus 176 ~~~-~~~g~~-g~~~v~~~~~~~~~~~~~~~~~~~~~Y~l~yl~~~~ka~~ls-~~V~i~~~~~~ 237 (263)
T 3a1j_C 176 FRL-STFGNA-GSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLS-CKVSIRTDNRG 237 (263)
T ss_dssp EEE-EEEETT-EEEEEEECTTCSSEEEEEECSCEEEEEEHHHHTTHHHHHHHC-SEEEEEEETTC
T ss_pred EEE-EEECCC-CEEEEEECCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHCCC-CEEEEEECCCC
T ss_conf 999-997788-579999528987147860278389999889999987540548-87999975997