HHsearch results for GI: 254780454 and protein with PDBid: 3a1j_C

>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=95.96  E-value=0.071  Score=29.05  Aligned_cols=184  Identities=10%  Similarity=0.093  Sum_probs=96.0

Q ss_pred             CEEEEEEECCEEEEEEECC-EEEEEEEEEEE------E-CCCCEEEEEHHHHHHHHHCCCCCCC------EEEEEECCCC
Q ss_conf             3389999899799999678-28999999777------5-2680799949987788740777773------0477733675
Q gi|254780454|r   31 CHVLLQANDGLLEIKASGP-EIEITGAIPAS------V-DVCGSITVSAHLLYDIVRKLQDGAQ------ISFFKENELG   96 (385)
Q Consensus        31 ~~ilie~~~~~l~l~atd~-~~~i~~~i~~~------i-~~~G~~~v~a~~l~~iik~L~~~~~------i~~~~~~~~~   96 (385)
                      ..+.+++.++++.++.-+. -..+...++.+      + +++-++.|+-..|..+++....+..      +.+...++ +
T Consensus        26 d~~~~~~~~~Gi~i~~d~s~v~l~~~~L~~~~F~~Y~~~~~~~~~ginl~~l~kiL~~~~~~d~~~~~~~~~i~~~~~-~  104 (263)
T 3a1j_C           26 EHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGY-G  104 (263)
T ss_dssp             SEEEEEEETTEEEEEEEETTTEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHHHHTTTCSCCCTTCCCEEEEEECST-T
T ss_pred             CEEEEEECCCEEEEEEECCCEEEEEEEECHHHCCEEEECCCCEEEEEEHHHHHHHHHHCCCCCCCCCEEEEEEEECCC-C
T ss_conf             369999968928999978968999999998999418977975499986899999997436787655305899997599-9


Q ss_pred             EE--EEEEECC--CEEEEECCCCCCCCC--CCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCE
Q ss_conf             08--9998678--202430366211432--12332430450561135542022023002455652101166776178734
Q gi|254780454|r   97 TE--VNISHGD--SNFYLQSFPESEFPS--TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK  170 (385)
Q Consensus        97 ~~--i~i~~~~--~~~~l~~~~~~~fP~--~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~  170 (385)
                      ..  +.++.++  .+|.++.+++++-+.  +|..+....+.++++.|+++++... ..+ |.       +.+....+...
T Consensus       105 ~~l~i~~e~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~i~~~S~~l~~~i~dl~-~~~-d~-------v~i~~~~~~~~  175 (263)
T 3a1j_C          105 YPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELD-MTS-EV-------LQITMSPDKPY  175 (263)
T ss_dssp             CCEEEEEEETTEEEEEEECCBCCCCCCCCCCCTTTEEEEEEEEGGGGHHHHHTSC-TTS-SE-------EEEEECSSSSS
T ss_pred             CEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHH-HCC-CE-------EEEEEECCCCE
T ss_conf             8799999449908999998556675334588864541899998999999999887-269-84-------99999838766


Q ss_pred             EEEEEECCEEEEEEEEECCCCCC--------CCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             89998534157666643578753--------3100000100012222102776464331334553
Q gi|254780454|r  171 LCAVATDGHRLAVAEVDIVAQIA--------KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR  227 (385)
Q Consensus       171 l~~vaTDg~RLa~~~~~~~~~~~--------~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~  227 (385)
                      +.+ .++|.. ...+..++...+        +.....-+.+.|..+.|...-. ..|+|.++.+.
T Consensus       176 ~~~-~~~g~~-g~~~v~~~~~~~~~~~~~~~~~~~~~Y~l~yl~~~~ka~~ls-~~V~i~~~~~~  237 (263)
T 3a1j_C          176 FRL-STFGNA-GSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLS-CKVSIRTDNRG  237 (263)
T ss_dssp             EEE-EEEETT-EEEEEEECTTCSSEEEEEECSCEEEEEEHHHHTTHHHHHHHC-SEEEEEEETTC
T ss_pred             EEE-EEECCC-CEEEEEECCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHCCC-CEEEEEECCCC
T ss_conf             999-997788-579999528987147860278389999889999987540548-87999975997