HHsearch results for GI: 254780454 and protein with PDBid: 3fds_C
>3fds_C DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=98.62 E-value=1.7e-05 Score=51.02 Aligned_cols=208 Identities=16% Similarity=0.198 Sum_probs=130.0
Q ss_pred CEEEE-EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEH
Q ss_conf 95898-599999999987502037888610133899998997999996782--899999977------752680799949
Q gi|254780454|r 1 MKITV-ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSA 71 (385)
Q Consensus 1 Mk~~i-~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a 71 (385)
||+++ +-+.|.++++..++++ ..+.++...++|.+.+.|.. .-+...++. +++++-.+.++.
T Consensus 2 ~~~~~~~ak~f~~~i~~l~~i~---------~e~~~~~~~~gl~~~~~D~s~~~l~~~~l~~~~F~~Y~~~~~~~~gi~~ 72 (249)
T 3fds_C 2 VKIVYPNAKDFFSFINSITNVT---------DSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDV 72 (249)
T ss_dssp CEEEESCHHHHHHHHHHHTTTC---------SSEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECH
T ss_pred EEEEECCHHHHHHHHHHHHHHH---------CCEEEEECCCEEEEEEECCCCEEEEEEEECHHHCEEEECCCCEEEEEEH
T ss_conf 8999578799999999999865---------8099998357489999878818999999386767576068986999889
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC----EEEEECCCCCCC-CCCCCCCCCEEEECCCHHHHHHHCCEEE
Q ss_conf 98778874077777304777336750899986782----024303662114-3212332430450561135542022023
Q gi|254780454|r 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS----NFYLQSFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHF 146 (385)
Q Consensus 72 ~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~----~~~l~~~~~~~f-P~~~~~~~~~~~~i~~~~l~~~i~~t~~ 146 (385)
+.+..++|.+.....+.....++.+..+.+...+. .|.++.++.+.. |.+|..+....+.+++..|+++++....
T Consensus 73 ~~l~kilk~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~l~~~~~~~~~~p~~~~~~~i~i~s~~f~~~~~~l~~ 152 (249)
T 3fds_C 73 SSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTL 152 (249)
T ss_dssp HHHHHHHTTCCCSCEEEEEEECSSEEEEEEEETTTCCEEEEEEECEECCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCHHCCCCCCCCCCEEEEECHHHHHHHHHHHHC
T ss_conf 99999983246664037884179851799995589737999972024532025788766526899648999999875402
Q ss_pred ECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECC----CCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 0024556521011667761787348999853415766664357----875331000001000122221027764643313
Q gi|254780454|r 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 (385)
Q Consensus 147 a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~----~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~ 222 (385)
..|+ |.+..+++...+.. ..||..-......-. ...+.+.....+.+.+..+.|.+....+.|.++
T Consensus 153 --~~d~-------v~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~yl~~~~k~~~~~s~~v~i~ 222 (249)
T 3fds_C 153 --VGEE-------MRISTEEDKIKIEA-GEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVS 222 (249)
T ss_dssp --HCSE-------EEEEEETTEEEEEE-EETTEEEEEEEEETBEESEEEESSCCEEEEEHHHHHHHHHTTTTCCSCEEEE
T ss_pred --CCCE-------EEEEEECCEEEEEE-ECCCCEEEEEECCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHCCCCEEEEE
T ss_conf --4978-------99999899999999-0278547999738985157852873113997899999997632148838999
Q ss_pred CCCCC
Q ss_conf 34553
Q gi|254780454|r 223 LSESR 227 (385)
Q Consensus 223 ~~~~~ 227 (385)
++.++
T Consensus 223 ~~~~~ 227 (249)
T 3fds_C 223 FGENL 227 (249)
T ss_dssp ECTTC
T ss_pred ECCCC
T ss_conf 72999