HHsearch results for GI: 254780454 and protein with PDBid: 3ifv_A
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.04 E-value=1.9e-08 Score=68.89 Aligned_cols=225 Identities=18% Similarity=0.269 Sum_probs=151.7
Q ss_pred ECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCC-----CCHHCCCCCHH
Q ss_conf 0561135542022023002455652101166776178734899985341576666435787533-----10000010001
Q gi|254780454|r 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK-----MPSIIVPRKAV 205 (385)
Q Consensus 131 ~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~-----~~~~iiP~k~l 205 (385)
.+++..|+++++... ....-+.|.+..++ +.+.|.|..|.+.....++...-. ...+-|+.+.|
T Consensus 5 ~~~a~~~k~i~~~l~---------~l~~e~~~~~~~~G--i~i~~mD~shv~Lv~l~l~~~~F~~Y~~d~~~igv~~~~l 73 (247)
T 3ifv_A 5 IVSAATLRDALDSVS---------VLVDECKIRLNEES--LSIRAVDPANVGMVDLTLDAAAFESYEAHGGVIGVNLSRL 73 (247)
T ss_dssp EECHHHHHHHHHHHH---------TTCSSEEEC---CE--EEEEEECTTSSEEEEEEEEGGGSSBC-----CEEECHHHH
T ss_pred EECHHHHHHHHHHHH---------HHHCEEEEEECCCE--EEEEEECCCCEEEEEEEECHHHCCEEEECCCEEEEEHHHH
T ss_conf 972999999999999---------87542899991784--7999997873799999988786978981285899998999
Q ss_pred HHHHHHCCCCCCCCCCCCCC--CCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCC
Q ss_conf 22221027764643313345--530100250699985126655322101355-566179984899888898874101235
Q gi|254780454|r 206 GEILRILSSKDSSVKVSLSE--SRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVR 282 (385)
Q Consensus 206 ~el~k~l~~~~~~v~i~~~~--~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~ 282 (385)
..+.|.... ++.+.+.+++ ..+.+..++..+.-+|++-..+...--+|+ ++...++++-+.|.+.++-+..+++.
T Consensus 74 ~kilk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~l~~i~~~~~~~~iP~~~~~~~i~~~s~~f~~~~~~l~~~~d~- 151 (247)
T 3ifv_A 74 EEVAGMAGA-GDLIHLTLDEETRKLNIRIDGLSYTLALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSDH- 151 (247)
T ss_dssp HHHHTTC-----CEEECC-------EEEETTEEEEC---CTTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHHCSE-
T ss_pred HHHHHHCCC-CCEEEEEECCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCE-
T ss_conf 999973179-947999992799878999723068998453543222568888664389994089988776676436986-
Q ss_pred CCCCEEEEECCEEEEEECC-CCCEEEEEEEEE----EECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCE
Q ss_conf 5530256517659999807-873268999998----96288439996388998898735753346633899965898758
Q gi|254780454|r 283 IQAVKLSLSSDKLCMTVDN-PDMGKAIESMNV----YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 (385)
Q Consensus 283 ~~~i~l~~~~~~l~i~~~~-~e~g~~~e~i~~----~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~ 357 (385)
+.+..+++++.+++.+ .+.|+..-.++. .++.++....|+.+||..+.++... .+.|++++.. ..|+
T Consensus 152 ---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~Yl~~~~k~~~l----s~~V~i~~~~-~~Pl 223 (247)
T 3ifv_A 152 ---IRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPT----DAEVTVELGE-EFPV 223 (247)
T ss_dssp ---EEEEEETTTTEEEEEEECSSCEEEEEECGGGCSEEEECCCEEEEEHHHHHHHHHHSCT----TCEEEEEECB-SSCE
T ss_pred ---EEEEEEECEEEEEEEEECCEEEEEEEECCCCCEEEEECCCCCEEEHHHHHHHHHHCCC----CCEEEEEECC-CCCE
T ss_conf ---9999980345999995156279999848986168850444528878999988744468----9869999769-9778
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 9943776544455566763799832
Q gi|254780454|r 358 FIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 358 ~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
.+.-.-. ++...-.|.|.|
T Consensus 224 ~l~y~i~------~~~g~i~f~LAP 242 (247)
T 3ifv_A 224 KLHYQIA------EGMGTITYMLAP 242 (247)
T ss_dssp EEEEEEG------GGTEEEEEEECC
T ss_pred EEEEEEC------CCCEEEEEEECC
T ss_conf 9999987------985699999866