HHsearch results for GI: 254780454 and protein with PDBid: 3ifv_A

>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.04  E-value=1.9e-08  Score=68.89  Aligned_cols=225  Identities=18%  Similarity=0.269  Sum_probs=151.7

Q ss_pred             ECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCC-----CCHHCCCCCHH
Q ss_conf             0561135542022023002455652101166776178734899985341576666435787533-----10000010001
Q gi|254780454|r  131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK-----MPSIIVPRKAV  205 (385)
Q Consensus       131 ~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~-----~~~~iiP~k~l  205 (385)
                      .+++..|+++++...         ....-+.|.+..++  +.+.|.|..|.+.....++...-.     ...+-|+.+.|
T Consensus         5 ~~~a~~~k~i~~~l~---------~l~~e~~~~~~~~G--i~i~~mD~shv~Lv~l~l~~~~F~~Y~~d~~~igv~~~~l   73 (247)
T 3ifv_A            5 IVSAATLRDALDSVS---------VLVDECKIRLNEES--LSIRAVDPANVGMVDLTLDAAAFESYEAHGGVIGVNLSRL   73 (247)
T ss_dssp             EECHHHHHHHHHHHH---------TTCSSEEEC---CE--EEEEEECTTSSEEEEEEEEGGGSSBC-----CEEECHHHH
T ss_pred             EECHHHHHHHHHHHH---------HHHCEEEEEECCCE--EEEEEECCCCEEEEEEEECHHHCCEEEECCCEEEEEHHHH
T ss_conf             972999999999999---------87542899991784--7999997873799999988786978981285899998999


Q ss_pred             HHHHHHCCCCCCCCCCCCCC--CCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCC
Q ss_conf             22221027764643313345--530100250699985126655322101355-566179984899888898874101235
Q gi|254780454|r  206 GEILRILSSKDSSVKVSLSE--SRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVR  282 (385)
Q Consensus       206 ~el~k~l~~~~~~v~i~~~~--~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~  282 (385)
                      ..+.|.... ++.+.+.+++  ..+.+..++..+.-+|++-..+...--+|+ ++...++++-+.|.+.++-+..+++. 
T Consensus        74 ~kilk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~l~~i~~~~~~~~iP~~~~~~~i~~~s~~f~~~~~~l~~~~d~-  151 (247)
T 3ifv_A           74 EEVAGMAGA-GDLIHLTLDEETRKLNIRIDGLSYTLALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSDH-  151 (247)
T ss_dssp             HHHHTTC-----CEEECC-------EEEETTEEEEC---CTTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHHCSE-
T ss_pred             HHHHHHCCC-CCEEEEEECCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCE-
T ss_conf             999973179-947999992799878999723068998453543222568888664389994089988776676436986-


Q ss_pred             CCCCEEEEECCEEEEEECC-CCCEEEEEEEEE----EECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCE
Q ss_conf             5530256517659999807-873268999998----96288439996388998898735753346633899965898758
Q gi|254780454|r  283 IQAVKLSLSSDKLCMTVDN-PDMGKAIESMNV----YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV  357 (385)
Q Consensus       283 ~~~i~l~~~~~~l~i~~~~-~e~g~~~e~i~~----~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~  357 (385)
                         +.+..+++++.+++.+ .+.|+..-.++.    .++.++....|+.+||..+.++...    .+.|++++.. ..|+
T Consensus       152 ---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~Yl~~~~k~~~l----s~~V~i~~~~-~~Pl  223 (247)
T 3ifv_A          152 ---IRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPT----DAEVTVELGE-EFPV  223 (247)
T ss_dssp             ---EEEEEETTTTEEEEEEECSSCEEEEEECGGGCSEEEECCCEEEEEHHHHHHHHHHSCT----TCEEEEEECB-SSCE
T ss_pred             ---EEEEEEECEEEEEEEEECCEEEEEEEECCCCCEEEEECCCCCEEEHHHHHHHHHHCCC----CCEEEEEECC-CCCE
T ss_conf             ---9999980345999995156279999848986168850444528878999988744468----9869999769-9778


Q ss_pred             EEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             9943776544455566763799832
Q gi|254780454|r  358 FIRGKDKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       358 ~i~~~~~~~~~~~~~~~~~~~liMP  382 (385)
                      .+.-.-.      ++...-.|.|.|
T Consensus       224 ~l~y~i~------~~~g~i~f~LAP  242 (247)
T 3ifv_A          224 KLHYQIA------EGMGTITYMLAP  242 (247)
T ss_dssp             EEEEEEG------GGTEEEEEEECC
T ss_pred             EEEEEEC------CCCEEEEEEECC
T ss_conf             9999987------985699999866