HHsearch results for GI: 254780454 and protein with PDBid: 3ifv_A

>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=98.41  E-value=3.2e-05  Score=49.35  Aligned_cols=203  Identities=14%  Similarity=0.207  Sum_probs=128.7

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHH
Q ss_conf             95898599999999987502037888610133899998997999996782--899999977------7526807999499
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAH   72 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~   72 (385)
                      +|.+++-+.|...++.++++++.         +.+++.++++.++|.|..  .-+...++.      +++++ .+.|+-.
T Consensus         2 ~~~~~~a~~~k~i~~~l~~l~~e---------~~~~~~~~Gi~i~~mD~shv~Lv~l~l~~~~F~~Y~~d~~-~igv~~~   71 (247)
T 3ifv_A            2 FKAIVSAATLRDALDSVSVLVDE---------CKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGG-VIGVNLS   71 (247)
T ss_dssp             CCEEECHHHHHHHHHHHHTTCSS---------EEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC------CEEECHH
T ss_pred             EEEEECHHHHHHHHHHHHHHHCE---------EEEEECCCEEEEEEECCCCEEEEEEEECHHHCCEEEECCC-EEEEEHH
T ss_conf             69997299999999999987542---------8999917847999997873799999988786978981285-8999989


Q ss_pred             HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCC---CCCCCCCCCCCEEEECCCHHHHHHHCCEEEECC
Q ss_conf             87788740777773047773367508999867820243036621---143212332430450561135542022023002
Q gi|254780454|r   73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES---EFPSTKEEEYVYSFELASSVLKNLVERTHFAMA  149 (385)
Q Consensus        73 ~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~---~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s  149 (385)
                      .|..++|.+..+..+.+..+++ ...+.++.++.++.+...+.+   +-|.+|+.+....+.+++..|+++++...-- +
T Consensus        72 ~l~kilk~~~~~d~l~l~~~~~-~~~l~i~~~~~~~~~~l~~i~~~~~~~~iP~~~~~~~i~~~s~~f~~~~~~l~~~-~  149 (247)
T 3ifv_A           72 RLEEVAGMAGAGDLIHLTLDEE-TRKLNIRIDGLSYTLALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMV-S  149 (247)
T ss_dssp             HHHHHHTTC----CEEECC--------EEEETTEEEEC---CTTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHHHCCCCCEEEEEECCC-CCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCC-C
T ss_conf             9999997317994799999279-9878999723068998453543222568888664389994089988776676436-9


Q ss_pred             CCCCCCCEEEEEEEECCCCCEEEEEEECC-EEEEEEEEECCCCC-----CCCCHHCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf             45565210116677617873489998534-15766664357875-----3310000010001222210277646433133
Q gi|254780454|r  150 TEEIRYYLNGIFFHINEEDLKLCAVATDG-HRLAVAEVDIVAQI-----AKMPSIIVPRKAVGEILRILSSKDSSVKVSL  223 (385)
Q Consensus       150 ~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg-~RLa~~~~~~~~~~-----~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~  223 (385)
                       |       -+.+..+.+...+.+.+..+ .+.   ....+...     ..+....-+.+.|..+.|...- .+.|++++
T Consensus       150 -d-------~i~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fsl~Yl~~~~k~~~l-s~~V~i~~  217 (247)
T 3ifv_A          150 -D-------HIRLRVDGAEETFHIEAEGDTDDV---DLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPT-DAEVTVEL  217 (247)
T ss_dssp             -S-------EEEEEEETTTTEEEEEEECSSCEE---EEEECGGGCSEEEECCCEEEEEHHHHHHHHHHSCT-TCEEEEEE
T ss_pred             -C-------EEEEEEEECEEEEEEEEECCEEEE---EEEECCCCCEEEEECCCCCEEEHHHHHHHHHHCCC-CCEEEEEE
T ss_conf             -8-------699999803459999951562799---99848986168850444528878999988744468-98699997


Q ss_pred             CCCC
Q ss_conf             4553
Q gi|254780454|r  224 SESR  227 (385)
Q Consensus       224 ~~~~  227 (385)
                      +.++
T Consensus       218 ~~~~  221 (247)
T 3ifv_A          218 GEEF  221 (247)
T ss_dssp             CBSS
T ss_pred             CCCC
T ss_conf             6997