HHsearch results for GI: 254780454 and protein with PDBid: 3ifv_A
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=98.41 E-value=3.2e-05 Score=49.35 Aligned_cols=203 Identities=14% Similarity=0.207 Sum_probs=128.7
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHH
Q ss_conf 95898599999999987502037888610133899998997999996782--899999977------7526807999499
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAH 72 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~ 72 (385)
+|.+++-+.|...++.++++++. +.+++.++++.++|.|.. .-+...++. +++++ .+.|+-.
T Consensus 2 ~~~~~~a~~~k~i~~~l~~l~~e---------~~~~~~~~Gi~i~~mD~shv~Lv~l~l~~~~F~~Y~~d~~-~igv~~~ 71 (247)
T 3ifv_A 2 FKAIVSAATLRDALDSVSVLVDE---------CKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGG-VIGVNLS 71 (247)
T ss_dssp CCEEECHHHHHHHHHHHHTTCSS---------EEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC------CEEECHH
T ss_pred EEEEECHHHHHHHHHHHHHHHCE---------EEEEECCCEEEEEEECCCCEEEEEEEECHHHCCEEEECCC-EEEEEHH
T ss_conf 69997299999999999987542---------8999917847999997873799999988786978981285-8999989
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCC---CCCCCCCCCCCEEEECCCHHHHHHHCCEEEECC
Q ss_conf 87788740777773047773367508999867820243036621---143212332430450561135542022023002
Q gi|254780454|r 73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES---EFPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149 (385)
Q Consensus 73 ~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~---~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s 149 (385)
.|..++|.+..+..+.+..+++ ...+.++.++.++.+...+.+ +-|.+|+.+....+.+++..|+++++...-- +
T Consensus 72 ~l~kilk~~~~~d~l~l~~~~~-~~~l~i~~~~~~~~~~l~~i~~~~~~~~iP~~~~~~~i~~~s~~f~~~~~~l~~~-~ 149 (247)
T 3ifv_A 72 RLEEVAGMAGAGDLIHLTLDEE-TRKLNIRIDGLSYTLALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMV-S 149 (247)
T ss_dssp HHHHHHTTC----CEEECC--------EEEETTEEEEC---CTTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHCCCCCEEEEEECCC-CCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCC-C
T ss_conf 9999997317994799999279-9878999723068998453543222568888664389994089988776676436-9
Q ss_pred CCCCCCCEEEEEEEECCCCCEEEEEEECC-EEEEEEEEECCCCC-----CCCCHHCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 45565210116677617873489998534-15766664357875-----3310000010001222210277646433133
Q gi|254780454|r 150 TEEIRYYLNGIFFHINEEDLKLCAVATDG-HRLAVAEVDIVAQI-----AKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 (385)
Q Consensus 150 ~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg-~RLa~~~~~~~~~~-----~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~ 223 (385)
| -+.+..+.+...+.+.+..+ .+. ....+... ..+....-+.+.|..+.|...- .+.|++++
T Consensus 150 -d-------~i~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fsl~Yl~~~~k~~~l-s~~V~i~~ 217 (247)
T 3ifv_A 150 -D-------HIRLRVDGAEETFHIEAEGDTDDV---DLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPT-DAEVTVEL 217 (247)
T ss_dssp -S-------EEEEEEETTTTEEEEEEECSSCEE---EEEECGGGCSEEEECCCEEEEEHHHHHHHHHHSCT-TCEEEEEE
T ss_pred -C-------EEEEEEEECEEEEEEEEECCEEEE---EEEECCCCCEEEEECCCCCEEEHHHHHHHHHHCCC-CCEEEEEE
T ss_conf -8-------699999803459999951562799---99848986168850444528878999988744468-98699997
Q ss_pred CCCC
Q ss_conf 4553
Q gi|254780454|r 224 SESR 227 (385)
Q Consensus 224 ~~~~ 227 (385)
+.++
T Consensus 218 ~~~~ 221 (247)
T 3ifv_A 218 GEEF 221 (247)
T ss_dssp CBSS
T ss_pred CCCC
T ss_conf 6997