HHsearch results for GI: 254780454 and protein with PDBid: 3k4x_A
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-09 Score=76.08 Aligned_cols=188 Identities=21% Similarity=0.303 Sum_probs=122.5
Q ss_pred EEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCC--CEEEECC------EEEEEE
Q ss_conf 9853415766664357875------3310000010001222210277646433133455--3010025------069998
Q gi|254780454|r 174 VATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIE------SLSMSV 239 (385)
Q Consensus 174 vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~--~i~~~~~------~~~~~s 239 (385)
-|.|..|.+...+.++... +.+..+-|..+.|..+.|.+.. .+.+++.++++ .+.+.+. ...|.-
T Consensus 578 q~mD~s~v~lv~l~l~~~~F~~Y~~d~~~~igi~~~~l~kilk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~f~l 656 (798)
T 3k4x_A 578 QAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSL 656 (798)
T ss_dssp EEECTTSSEEEEEEEEGGGEEEEECSSCEEEEEEHHHHHHHHHHSCS-SSEEEEECCSSCSEEEEEEECSSCCCEEEEEE
T ss_pred EEECCCCEEEEEEEECHHHCCEEECCCCEEEEEEHHHHHHHHCCCCC-CCEEEEEEECCCCEEEEEEEECCCCEEEEEEE
T ss_conf 99988858999999998869738849987999998998999703889-97899999589987999998078872899998
Q ss_pred EECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE-----
Q ss_conf 5126655322101355-5661799848998888988741012355530256517659999807873268999998-----
Q gi|254780454|r 240 RLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV----- 313 (385)
Q Consensus 240 rLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~----- 313 (385)
+|++-..+.. -+|+ +++..++++-..|.++++-+..+++ .|.+..+++++.+++.+ |.|++.-.+..
T Consensus 657 ~lidi~~~~~--~iP~~e~~~~i~m~s~~f~~iik~l~~~~d----~i~i~~~~~~~~f~~~g-d~~~~~~~~~~~~~~~ 729 (798)
T 3k4x_A 657 KLMDIDADFL--KIEELQYDSTLSLPSSEFSKIVRDLSQLSD----SINIMITKETIKFVADG-DIGSGSVIIKPFVDME 729 (798)
T ss_dssp ECCCCCCCCC--CCCCCCCSEEEEEEHHHHHHHHHHHHTTCS----EEEEEEETTEEEEEEEC-SSCEEEEEECCBCCSS
T ss_pred EEECCCCCCC--CCCCCCCCEEEEEEHHHHHHHHHHHHHCCC----EEEEEEECCEEEEEEEC-CCCEEEEEEECCCCCC
T ss_conf 7462575468--999988877999998999999999985199----89999929999999982-1635899993266667
Q ss_pred ------E-ECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf ------9-62884399963889988987357533466338999658987589943776544455566763799832
Q gi|254780454|r 314 ------Y-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 314 ------~-~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
. ..+++++..|..+||..+.++..- .++|++++. +..|+.+.-.-+. ....|.|-|
T Consensus 730 ~~~~~~~~~~~~~~~~~fsl~yL~~~~k~~~l----s~~V~i~~~-~d~Pl~l~y~i~~--------g~i~f~LAP 792 (798)
T 3k4x_A 730 HPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL----SDRVGIRLS-SEAPALFQFDLKS--------GFLQFFLAP 792 (798)
T ss_dssp CGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT----CSEEEEEEC-SSSCEEEEEEETT--------EEEEEEECC
T ss_pred CCCCEEEEECCCCEEEEEEHHHHHHHHHHHCC----CCEEEEEEE-CCCCEEEEEEECC--------EEEEEEECC
T ss_conf 75412788528837999988999998745058----988999996-9946999999689--------899999965