HHSEARCH alignment of GI: 254780454 and SCOP domain: d1ok7a1

Alignment
>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=1.3e-29  Score=195.89  Aligned_cols=121  Identities=31%  Similarity=0.517  Sum_probs=114.5

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH
Q ss_conf             9589859999999998750203788861013389999899799999678289999997-775268079994998778874
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR   79 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik   79 (385)
                      |||+|+|++|.++|+++++++++|++.|||+|+||++++++|+++|||++++++++++ ++++++|+++||||.|.+++|
T Consensus         1 Mkf~i~k~~L~~aL~~v~~~v~~k~~~PiL~~vli~~~~~~l~l~aTDle~~i~~~i~~~~v~~~G~~~vpak~l~divr   80 (122)
T d1ok7a1           1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICR   80 (122)
T ss_dssp             CEEEEEHHHHHHHHHHHHCSCCSCCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEECCSCCBCEEEEEEHHHHHHHHH
T ss_pred             CEEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEEECCEEEEEEECCCEEEEEEEEECCCCCCCEEEEEEHHHHHHHH
T ss_conf             98999899999999999736078987046535899998999999995477389999975155778779971188899997


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCC
Q ss_conf             077777304777336750899986782024303662114321233
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE  124 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~  124 (385)
                      +||++..+.+..++   +++.|++|+++|+|+++|+++||.+|++
T Consensus        81 ~lp~~~~i~~~~~~---~~l~i~~~~~~f~l~~~~~~~fP~ipef  122 (122)
T d1ok7a1          81 GLPEGAEIAVQLEG---ERMLVRSGRSRFSLSTLPAADFPNLDDW  122 (122)
T ss_dssp             HSCTTCEEEEEEET---TEEEEEETTEEEEEECBCGGGSCCCCCC
T ss_pred             HCCCCCCEEEEECC---CEEEEEECCEEEEECCCCHHHCCCCCCC
T ss_conf             49999818999659---9899998965999726797888899999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Escherichia coli [TaxId: 562]