HHSEARCH alignment of GI: 254780454 and SCOP domain: d1ok7a1

Alignment
>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.15  E-value=8.9e-11  Score=81.62  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=98.0

Q ss_pred             EEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHH
Q ss_conf             45056113554202202300245565210116677617873489998534157666643578753310000010001222
Q gi|254780454|r  129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI  208 (385)
Q Consensus       129 ~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el  208 (385)
                      .|.++.+.|.+++..+..++++..+.|+|.||+++.+++  .+.+.|||+.+-...+++.. ...++..++||+|.+.++
T Consensus         2 kf~i~k~~L~~aL~~v~~~v~~k~~~PiL~~vli~~~~~--~l~l~aTDle~~i~~~i~~~-~v~~~G~~~vpak~l~di   78 (122)
T d1ok7a1           2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG--TLSLTGTDLEMEMVARVALV-QPHEPGATTVPARKFFDI   78 (122)
T ss_dssp             EEEEEHHHHHHHHHHHHCSCCSCCSSGGGGEEEEEEETT--EEEEEEECSSEEEEEEEECC-SCCBCEEEEEEHHHHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEEECC--EEEEEEECCCEEEEEEEEEC-CCCCCCEEEEEEHHHHHH
T ss_conf             899989999999999973607898704653589999899--99999954773899999751-557787799711888999


Q ss_pred             HHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECC-CCCCCCC
Q ss_conf             21027764643313345530100250699985126-6553221
Q gi|254780454|r  209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID-GEFPNYQ  250 (385)
Q Consensus       209 ~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~-g~yPdy~  250 (385)
                      .|-++++ ..+.+..+++++.++.++..|....++ ..||...
T Consensus        79 vr~lp~~-~~i~~~~~~~~l~i~~~~~~f~l~~~~~~~fP~ip  120 (122)
T d1ok7a1          79 CRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD  120 (122)
T ss_dssp             HHHSCTT-CEEEEEEETTEEEEEETTEEEEEECBCGGGSCCCC
T ss_pred             HHHCCCC-CCEEEEECCCEEEEEECCEEEEECCCCHHHCCCCC
T ss_conf             9749999-81899965998999989659997267978888999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Escherichia coli [TaxId: 562]