HHSEARCH alignment of GI: 254780454 and SCOP domain: d1ok7a2

Alignment
>d1ok7a2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=1.5e-31  Score=207.63  Aligned_cols=121  Identities=40%  Similarity=0.737  Sum_probs=110.6

Q ss_pred             CCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHH
Q ss_conf             43045056113554202202300245565210116677617873489998534157666643578753310000010001
Q gi|254780454|r  126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV  205 (385)
Q Consensus       126 ~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l  205 (385)
                      ....++|+++.|+++|++|.||+|+|++||+|+||+|+++++  ++.+|||||||||+++.+++... ...+++||+|.+
T Consensus         2 ~~~~~~i~~~~l~~~i~~t~~A~s~de~r~~L~Gv~~~~~~~--~l~~vATDg~RLa~~~~~~~~~~-~~~~~iip~k~l   78 (122)
T d1ok7a2           2 SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE--ELRTVATDGHRLAVCSMPIGQSL-PSHSVIVPRKGV   78 (122)
T ss_dssp             EEEEEEEEHHHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEE--EEEEEEECSSEEEEEEEEEEEEE-EEEEEEEEHHHH
T ss_pred             CCEEEEECHHHHHHHHHHEEEEEECCCCCCEEEEEEEEEECC--CEEEEECCCCEEEEEEEECCCCC-CCCCCCCCHHHH
T ss_conf             855999989999999844758971577731047689998088--04899816848788886147775-533321341678


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCC
Q ss_conf             22221027764643313345530100250699985126655322
Q gi|254780454|r  206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY  249 (385)
Q Consensus       206 ~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy  249 (385)
                      .++.+++.+.++.|++.++++++.|.+++.+++||||+|+||||
T Consensus        79 ~el~~~l~~~~~~v~i~~~~~~i~f~~~~~~~~srlIeG~fPdY  122 (122)
T d1ok7a2          79 IELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDY  122 (122)
T ss_dssp             HHHHHTCCCCSSEEEEEEESSEEEEEETTEEEEEECCCSCCCCG
T ss_pred             HHHHHHHCCCCCEEEEEECCCEEEEEECCEEEEEEEECCCCCCC
T ss_conf             88877641676248897468708999899999998846338698


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Escherichia coli [TaxId: 562]