HHSEARCH alignment of GI: 254780454 and SCOP domain: d1plqa1

Alignment
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.69  E-value=0.11  Score=26.53  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=40.0

Q ss_pred             EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEEE------ECCCCEEEEEHHHHHHH
Q ss_conf             599999999987502037888610133899998997999996782--8999999777------52680799949987788
Q gi|254780454|r    6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPAS------VDVCGSITVSAHLLYDI   77 (385)
Q Consensus         6 ~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~~------i~~~G~~~v~a~~l~~i   77 (385)
                      +-..|...++.++.++         ..+-++..++++.+.+.|..  .-+...++++      ++++-.+.|+-..|..|
T Consensus         8 ~a~~fk~i~~~lk~l~---------~~~~~~~~~~Gi~iq~mD~shv~lv~l~L~~~~F~~Y~~~~~~~iGi~~~~l~kI   78 (126)
T d1plqa1           8 EASLFKRIIDGFKDCV---------QLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKI   78 (126)
T ss_dssp             SHHHHHHHHHHHTTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH---------CEEEEEECCCEEEEEEECCCCEEEEEEEECHHHCCEEEECCCEEEEEEHHHHHHH
T ss_conf             6689999999998874---------5399999778699999688858999999887879604325678999998998999


Q ss_pred             HHCCCCCCCEEEEEEC
Q ss_conf             7407777730477733
Q gi|254780454|r   78 VRKLQDGAQISFFKEN   93 (385)
Q Consensus        78 ik~L~~~~~i~~~~~~   93 (385)
                      +|....+..+.+..++
T Consensus        79 lk~~~~~d~l~l~~~~   94 (126)
T d1plqa1          79 LRCGNNTDTLTLIADN   94 (126)
T ss_dssp             TTCSTTTSEEEEEECS
T ss_pred             HHHCCCCCEEEEEEEC
T ss_conf             8536899889999908


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]