HHSEARCH alignment of GI: 254780454 and SCOP domain: d1plqa2

Alignment
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.97  E-value=0.00039  Score=41.31  Aligned_cols=101  Identities=24%  Similarity=0.390  Sum_probs=82.3

Q ss_pred             CCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEE-----------EE-ECCCC
Q ss_conf             355-566179984899888898874101235553025651765999980787326899999-----------89-62884
Q gi|254780454|r  253 IPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN-----------VY-YNECP  319 (385)
Q Consensus       253 ip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~-----------~~-~~G~~  319 (385)
                      ||. +++..+++.-.+|.++++.+..+.+.    |.+..+++++.+++.+ +.|++.-.+.           .. -.+++
T Consensus         2 IP~~ey~~~i~m~S~~f~~~~kdl~~~gd~----i~i~~~~~~i~f~~~g-d~g~~~i~i~~~~~~~~~~~~~~~~~~~~   76 (132)
T d1plqa2           2 IEELQYDSTLSLPSSEFSKIVRDLSQLSDS----INIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQP   76 (132)
T ss_dssp             CCCSCCSEEEEEEHHHHHHHHHHHHTTCSE----EEEEEETTEEEEEEEC-SSCEEEEEECCBCCTTCGGGCBEEEESSC
T ss_pred             CCCCCCCEEEEEEHHHHHHHHHHHHHCCCE----EEEEECCCEEEEEEEC-CCCEEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf             898665579998999999999999864994----9999859968999972-55359999922577666542125511642


Q ss_pred             EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCC
Q ss_conf             39996388998898735753346633899965898758994377
Q gi|254780454|r  320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD  363 (385)
Q Consensus       320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~  363 (385)
                      ++-.|..+||..+.++..-    .+.|++++.. ..|+.+.-.-
T Consensus        77 ~~~~ysl~yL~~~~K~~~l----s~~V~i~~~~-~~Pl~~~y~i  115 (132)
T d1plqa2          77 VDLTFGAKYLLDIIKGSSL----SDRVGIRLSS-EAPALFQFDL  115 (132)
T ss_dssp             EEEEEEHHHHHHHGGGGGT----CSEEEEEECS-SSCEEEEEEE
T ss_pred             EEEEEEHHHHHHHHCCCCC----CCEEEEEEEC-CCCEEEEEEE
T ss_conf             0439888999987672468----9989999948-9889999996


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]