HHSEARCH alignment of GI: 254780454 and SCOP domain: d1u7ba1

Alignment

Probab=92.30  E-value=0.28  Score=24.04  Aligned_cols=79  Identities=10%  Similarity=0.087  Sum_probs=39.6

Q ss_pred             EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHHHHHH
Q ss_conf             599999999987502037888610133899998997999996782--899999977------752680799949987788
Q gi|254780454|r    6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHLLYDI   77 (385)
Q Consensus         6 ~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~l~~i   77 (385)
                      +...|...++.++.++         ..+-+...++++.+.|.|..  .-+...++.      +++++-.+.|+...|..+
T Consensus         8 ~a~~fk~i~~~lk~l~---------~e~~~~~~~~Gi~iq~mD~shv~Lv~l~L~~~~F~~Y~~~~~~~iGv~~~~l~kI   78 (126)
T d1u7ba1           8 QGSILKKVLEALKDLI---------NEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKI   78 (126)
T ss_dssp             CTHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH---------CEEEEEECCCEEEEEEECCCCEEEEEEEECHHHCCEEEECCCEEEEEEHHHHHHH
T ss_conf             5799999999998875---------4289999079689999788858999999997988336875777998989999999


Q ss_pred             HHCCCCCCCEEEEEEC
Q ss_conf             7407777730477733
Q gi|254780454|r   78 VRKLQDGAQISFFKEN   93 (385)
Q Consensus        78 ik~L~~~~~i~~~~~~   93 (385)
                      +|.+.++..+.+..++
T Consensus        79 lk~~~~~d~l~l~~~~   94 (126)
T d1u7ba1          79 LKCAGNEDIITLRAED   94 (126)
T ss_dssp             HTTSCTTCEEEEEECT
T ss_pred             HHHCCCCCEEEEEEEC
T ss_conf             9516899789999947

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Human (Homo sapiens) [TaxId: 9606]