HHSEARCH alignment of GI: 254780454 and SCOP domain: d1u7ba2

Alignment
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.93  E-value=0.00025  Score=42.47  Aligned_cols=113  Identities=17%  Similarity=0.253  Sum_probs=86.0

Q ss_pred             CCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE-----------E-ECCCC
Q ss_conf             355-5661799848998888988741012355530256517659999807873268999998-----------9-62884
Q gi|254780454|r  253 IPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV-----------Y-YNECP  319 (385)
Q Consensus       253 ip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~-----------~-~~G~~  319 (385)
                      ||+ +++..+.+.-.+|.+.++-+..+.+    .+.+..+++.+.+++.+ |.|+++..+.-           . -.+++
T Consensus         2 IP~~ey~~~i~~~s~~f~~~~kdl~~~gd----~v~i~~~~~~i~~~~~g-d~g~~~~~i~~~~~~~~~~~~~~i~~~~~   76 (129)
T d1u7ba2           2 IPEQEYSCVVKMPSGEFARICRDLSHIGD----AVVISCAKDGVKFSASG-ELGNGNIKLSQTSNVDKEEEAVTIEMNEP   76 (129)
T ss_dssp             CCCCCCSEEEEEEHHHHHHHHHHHHTTCS----EEEEEEETTEEEEEEEE-TTEEEEEEECCCC----CCSCCEEEESSC
T ss_pred             CCCCCCCEEEEEEHHHHHHHHHHHHHHCC----HHEEEECCCEEEEEEEC-CCCEEEEEEECCCCCCCCCCEEEEECCCC
T ss_conf             79977768999998999999999987170----54178658727999862-66427788703566667542057613754


Q ss_pred             EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             399963889988987357533466338999658987589943776544455566763799832
Q gi|254780454|r  320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP  382 (385)
                      ++..|..+||..+.+...-    .+.|.+++ +...|+.++-.-.+       .-...+.|-|
T Consensus        77 ~~~~fsl~YL~~~~K~~~l----s~~v~i~~-~~~~Pl~i~y~~~~-------~g~l~fyLAP  127 (129)
T d1u7ba2          77 VQLTFALRYLNFFTKATPL----SSTVTLSM-SADVPLVVEYKIAD-------MGHLKYYLAP  127 (129)
T ss_dssp             EEEEEEHHHHHHHGGGGGG----CSEEEEEE-CTTSCEEEEEEETT-------TEEEEEEECC
T ss_pred             CEEEEEHHHHHHHHCHHCC----CCEEEEEE-CCCCCEEEEEEECC-------CCEEEEEECC
T ss_conf             2169878999987465347----88399998-59988999998189-------9589999843


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Human (Homo sapiens) [TaxId: 9606]