HHSEARCH alignment of GI: 254780454 and SCOP domain: d1ud9a1

Alignment

Probab=94.70  E-value=0.11  Score=26.54  Aligned_cols=81  Identities=10%  Similarity=0.230  Sum_probs=35.5

Q ss_pred             EHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEE-EEEEEEE----EEC-CCCEEEEECHHHHHHHHHHCC
Q ss_conf             4899888898874101235553025651765999980787326-8999998----962-884399963889988987357
Q gi|254780454|r  264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNV----YYN-ECPMDICFNYKYLLEIIDNIS  337 (385)
Q Consensus       264 ~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~-~~e~i~~----~~~-G~~~~i~fN~~yl~d~L~~~~  337 (385)
                      +.+.|...++-+.-+.++    +.|.++++++.+.+-++..-. ..-.++.    .|+ .++..+|+|...|..+|+...
T Consensus         7 da~~fk~i~~~lk~l~~e----~~~~~~~~Gi~iq~mD~s~v~lv~l~L~~~~F~~Y~~~~~~~igv~~~~l~kilk~~~   82 (119)
T d1ud9a1           7 DVRDLKAIIQALLKLVDE----ALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKAAK   82 (119)
T ss_dssp             CHHHHHHHHHHHHHHCSE----EEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHCE----EEEEECCCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHCC
T ss_conf             789999999999987544----9999916827999967887899999967787864056877899999999999996188


Q ss_pred             CCCCCCCEEEEEECC
Q ss_conf             533466338999658
Q gi|254780454|r  338 SDEVVDDEVVFRLDS  352 (385)
Q Consensus       338 ~~~~~~e~i~l~~~~  352 (385)
                      .+    +.++|..++
T Consensus        83 ~~----d~l~l~~~~   93 (119)
T d1ud9a1          83 RK----EEIIIDADS   93 (119)
T ss_dssp             SC----CCEEEEEEE
T ss_pred             CC----CEEEEEECC
T ss_conf             99----889999679

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]