Query         gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 385
No_of_seqs    121 out of 2231
Neff          8.0 
Searched_HMMs 13730
Date          Wed Jun  1 06:01:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780454.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1vpka3 d.131.1.1 (A:244-366)  100.0 3.7E-31 2.7E-35  205.3  16.4  122  250-385     1-122 (123)
  2 d1ok7a3 d.131.1.1 (A:245-366)  100.0 6.5E-31 4.7E-35  203.8  15.3  122  250-385     1-122 (122)
  3 d1vpka2 d.131.1.1 (A:121-243)  100.0 2.4E-31 1.7E-35  206.4   8.6  121  125-249     2-123 (123)
  4 d1ok7a1 d.131.1.1 (A:1-122) DN 100.0 1.3E-29 9.5E-34  195.9  17.0  121    1-124     1-122 (122)
  5 d1ok7a2 d.131.1.1 (A:123-244)  100.0 1.5E-31 1.1E-35  207.6   7.0  121  126-249     2-122 (122)
  6 d1vpka1 d.131.1.1 (A:1-120) DN 100.0 1.6E-27 1.1E-31  183.3  14.3  118    1-122     1-119 (120)
  7 d1vpka2 d.131.1.1 (A:121-243)   99.3 7.5E-11 5.5E-15   82.1  15.7  115    2-120     6-122 (123)
  8 d1vpka1 d.131.1.1 (A:1-120) DN  99.3 3.1E-12 2.3E-16   90.5   7.9  116  129-249     2-118 (120)
  9 d1ok7a1 d.131.1.1 (A:1-122) DN  99.1 8.9E-11 6.5E-15   81.6   8.7  118  129-250     2-120 (122)
 10 d1ok7a2 d.131.1.1 (A:123-244)   99.1 3.8E-09 2.7E-13   71.8  16.7  116    2-121     5-122 (122)
 11 d1vpka3 d.131.1.1 (A:244-366)   98.2 4.8E-05 3.5E-09   46.8  13.6  106    2-114    11-119 (123)
 12 d1ok7a3 d.131.1.1 (A:245-366)   98.0 0.00015 1.1E-08   43.8  13.9   95    2-103    11-107 (122)
 13 d1rwza2 d.131.1.2 (A:123-244)   98.0 0.00026 1.9E-08   42.3  14.4  111  256-382     4-118 (122)
 14 d1plqa2 d.131.1.2 (A:127-258)   98.0 0.00039 2.9E-08   41.3  15.0  101  253-363     2-115 (132)
 15 d1iz5a2 d.131.1.2 (A:126-246)   97.9 0.00026 1.9E-08   42.4  13.7  110  256-382     4-120 (121)
 16 d1u7ba2 d.131.1.2 (A:127-255)   97.9 0.00025 1.8E-08   42.5  13.5  113  253-382     2-127 (129)
 17 d1ud9a2 d.131.1.2 (A:127-245)   97.6  0.0019 1.4E-07   37.1  14.8  109  256-382     1-116 (119)
 18 d1rwza1 d.131.1.2 (A:1-122) Pr  97.5  0.0028   2E-07   36.2  14.5  110    2-122     3-120 (122)
 19 d1iz5a1 d.131.1.2 (A:2-120) Pr  95.9   0.042 3.1E-06   29.0  11.5   86   31-116    24-118 (119)
 20 d1ud9a1 d.131.1.2 (A:1-119) Pr  94.7    0.11 7.8E-06   26.5  11.9   81  264-352     7-93  (119)
 21 d1plqa1 d.131.1.2 (A:1-126) Pr  94.7    0.11 7.8E-06   26.5  11.9   79    6-93      8-94  (126)
 22 d1u7ba1 d.131.1.2 (A:1-126) Pr  92.3    0.28   2E-05   24.0  12.5   79    6-93      8-94  (126)
 23 d2fa8a1 c.47.1.23 (A:4-89) Hyp  52.3       2 0.00015   18.8   0.8   49  205-253    23-72  (86)
 24 d2qdya1 d.149.1.1 (A:10-206) I  22.9      16  0.0012   13.3   1.5   10  199-208   130-139 (197)

No 1  
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=99.97  E-value=3.7e-31  Score=205.28  Aligned_cols=122  Identities=24%  Similarity=0.467  Sum_probs=116.2

Q ss_pred             CCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHH
Q ss_conf             10135556617998489988889887410123555302565176599998078732689999989628843999638899
Q gi|254780454|r  250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL  329 (385)
Q Consensus       250 ~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl  329 (385)
                      ++|||++++++++++|.+|++||+|+++++++++++|+|+|+++++++++.++|.|++.|+++++|+|++++|+||++||
T Consensus         1 ~~viP~~~~~~v~v~r~~l~~al~Rv~~~s~~~~~~V~l~~~~~~l~l~s~~~e~g~~~e~i~~~~~Ge~~~i~fN~~yL   80 (123)
T d1vpka3           1 KRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFI   80 (123)
T ss_dssp             GGGSCSCCSEEEEEEHHHHHHHHHHHHHHHTTTTCCEEEEECSSEEEEEEEETTTEEEEEEEECEEEECCEEEEECHHHH
T ss_pred             CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCHHCCCCCCCCCCCCCEEEEECHHHH
T ss_conf             95069999879999999999999999988437776358996388148886266520004110100257776999889999


Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             88987357533466338999658987589943776544455566763799832129
Q gi|254780454|r  330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI  385 (385)
Q Consensus       330 ~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri  385 (385)
                      +|+|+++++     ++|.|+|.++.+|++|++.++         .+|+||||||||
T Consensus        81 ~d~L~~~~~-----~~V~l~~~~~~~p~~i~~~~~---------~~~~~liMP~ri  122 (123)
T d1vpka3          81 EDVLKHIET-----EEIEMNFVDSTSPCQINPLDI---------SGYLYIVMPIRL  122 (123)
T ss_dssp             HHHHHHCCS-----SEEEEEESCTTSCEEEEETTC---------CSEEEEECCBCC
T ss_pred             HHHHHHCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf             999954789-----879999868999889963899---------953899984881


No 2  
>d1ok7a3 d.131.1.1 (A:245-366) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=6.5e-31  Score=203.82  Aligned_cols=122  Identities=35%  Similarity=0.602  Sum_probs=116.2

Q ss_pred             CCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHH
Q ss_conf             10135556617998489988889887410123555302565176599998078732689999989628843999638899
Q gi|254780454|r  250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL  329 (385)
Q Consensus       250 ~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl  329 (385)
                      ++|||+++++++.++|++|+++++|++++++++++.|+|+|+++++++++.+++.|++.|+++++|+|++++|+||++||
T Consensus         1 rrvIP~~~~~~i~v~r~el~~al~R~s~~~~~~~~~v~l~~~~~~l~lss~~~e~g~~~e~i~~~~~G~~~~I~fN~~yL   80 (122)
T d1ok7a3           1 RRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYV   80 (122)
T ss_dssp             GGTSCSCCCEEEEEEHHHHHHHHHHHHTTSCTTSCEEEEEEETTEEEEEEECTTCCEEEEEEECBCCSCCEEEEEEHHHH
T ss_pred             CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECHHHH
T ss_conf             96108999889999899999999999988517885599998377039997575543044787313588448999999999


Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             88987357533466338999658987589943776544455566763799832129
Q gi|254780454|r  330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI  385 (385)
Q Consensus       330 ~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri  385 (385)
                      +|+|+++++     ++|+|.|+++.+|++|++.++         .+|+||||||||
T Consensus        81 ~d~L~~~~~-----~~i~i~~~~~~~p~~i~~~~d---------~~~~~liMP~rl  122 (122)
T d1ok7a3          81 LDVLNALKC-----ENVRMMLTDSVSSVQIEDAAS---------QSAAYVVMPMRL  122 (122)
T ss_dssp             HHHHHHHCS-----SEEEEEECCTTSCEEEEETTE---------EEEEEEECCCCC
T ss_pred             HHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf             999960799-----879999838999789857999---------956899980469


No 3  
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=99.97  E-value=2.4e-31  Score=206.43  Aligned_cols=121  Identities=32%  Similarity=0.587  Sum_probs=110.8

Q ss_pred             CCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCH
Q ss_conf             24304505611355420220230024556521011667761787348999853415766664357875331000001000
Q gi|254780454|r  125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA  204 (385)
Q Consensus       125 ~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~  204 (385)
                      +++.+|+|+++.|+++|++|.||+|+|++||+|+||+|++.++  ++++|||||||||+++.+++.+  .+.++|||+|+
T Consensus         2 e~~~~f~i~~~~L~~~I~~v~fA~s~d~~r~~L~Gv~~~~~~~--~l~~vATDg~RLa~~~~~~~~~--~~~~~iiP~k~   77 (123)
T d1vpka2           2 ESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKN--LLRLVASDGFRLALAEEQIENE--EEASFLLSLKS   77 (123)
T ss_dssp             CSSEEEEEEHHHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETT--EEEEEEECSSEEEEEEEECCCC--SCEEEEEEHHH
T ss_pred             CCCEEEEECHHHHHHHHHHEEEEECCCCCCCEEEEEEEEEECC--CEEEEEEEEEEEEEEEHHCCCC--CCCCEEEEECH
T ss_conf             9865999989999999845649952678621287689998468--3489998512532230120247--76527986213


Q ss_pred             HHHHHHHCCCC-CCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCC
Q ss_conf             12222102776-4643313345530100250699985126655322
Q gi|254780454|r  205 VGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY  249 (385)
Q Consensus       205 l~el~k~l~~~-~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy  249 (385)
                      +.++.|++.+. +++|+++++++++.|.+++.++.||||+|+||||
T Consensus        78 l~el~k~l~~~~~~~v~i~~~~~~i~~~~~~~~~~srlieG~fPdY  123 (123)
T d1vpka2          78 MKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETVMRVVDAEFPDY  123 (123)
T ss_dssp             HHHHHHHHHTCCCSEEEEEECSSEEEEECSSEEEEEECCSSCCCCG
T ss_pred             HHHHHHHHCCCCCCEEEEEECCCEEEEEECCEEEEEEEECCCCCCC
T ss_conf             5677765200356269999789899999899999997647538797


No 4  
>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=1.3e-29  Score=195.89  Aligned_cols=121  Identities=31%  Similarity=0.517  Sum_probs=114.5

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH
Q ss_conf             9589859999999998750203788861013389999899799999678289999997-775268079994998778874
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR   79 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik   79 (385)
                      |||+|+|++|.++|+++++++++|++.|||+|+||++++++|+++|||++++++++++ ++++++|+++||||.|.+++|
T Consensus         1 Mkf~i~k~~L~~aL~~v~~~v~~k~~~PiL~~vli~~~~~~l~l~aTDle~~i~~~i~~~~v~~~G~~~vpak~l~divr   80 (122)
T d1ok7a1           1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICR   80 (122)
T ss_dssp             CEEEEEHHHHHHHHHHHHCSCCSCCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEECCSCCBCEEEEEEHHHHHHHHH
T ss_pred             CEEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEEECCEEEEEEECCCEEEEEEEEECCCCCCCEEEEEEHHHHHHHH
T ss_conf             98999899999999999736078987046535899998999999995477389999975155778779971188899997


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCC
Q ss_conf             077777304777336750899986782024303662114321233
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE  124 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~  124 (385)
                      +||++..+.+..++   +++.|++|+++|+|+++|+++||.+|++
T Consensus        81 ~lp~~~~i~~~~~~---~~l~i~~~~~~f~l~~~~~~~fP~ipef  122 (122)
T d1ok7a1          81 GLPEGAEIAVQLEG---ERMLVRSGRSRFSLSTLPAADFPNLDDW  122 (122)
T ss_dssp             HSCTTCEEEEEEET---TEEEEEETTEEEEEECBCGGGSCCCCCC
T ss_pred             HCCCCCCEEEEECC---CEEEEEECCEEEEECCCCHHHCCCCCCC
T ss_conf             49999818999659---9899998965999726797888899999


No 5  
>d1ok7a2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=1.5e-31  Score=207.63  Aligned_cols=121  Identities=40%  Similarity=0.737  Sum_probs=110.6

Q ss_pred             CCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHH
Q ss_conf             43045056113554202202300245565210116677617873489998534157666643578753310000010001
Q gi|254780454|r  126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV  205 (385)
Q Consensus       126 ~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l  205 (385)
                      ....++|+++.|+++|++|.||+|+|++||+|+||+|+++++  ++.+|||||||||+++.+++... ...+++||+|.+
T Consensus         2 ~~~~~~i~~~~l~~~i~~t~~A~s~de~r~~L~Gv~~~~~~~--~l~~vATDg~RLa~~~~~~~~~~-~~~~~iip~k~l   78 (122)
T d1ok7a2           2 SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE--ELRTVATDGHRLAVCSMPIGQSL-PSHSVIVPRKGV   78 (122)
T ss_dssp             EEEEEEEEHHHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEE--EEEEEEECSSEEEEEEEEEEEEE-EEEEEEEEHHHH
T ss_pred             CCEEEEECHHHHHHHHHHEEEEEECCCCCCEEEEEEEEEECC--CEEEEECCCCEEEEEEEECCCCC-CCCCCCCCHHHH
T ss_conf             855999989999999844758971577731047689998088--04899816848788886147775-533321341678


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCC
Q ss_conf             22221027764643313345530100250699985126655322
Q gi|254780454|r  206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY  249 (385)
Q Consensus       206 ~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy  249 (385)
                      .++.+++.+.++.|++.++++++.|.+++.+++||||+|+||||
T Consensus        79 ~el~~~l~~~~~~v~i~~~~~~i~f~~~~~~~~srlIeG~fPdY  122 (122)
T d1ok7a2          79 IELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDY  122 (122)
T ss_dssp             HHHHHTCCCCSSEEEEEEESSEEEEEETTEEEEEECCCSCCCCG
T ss_pred             HHHHHHHCCCCCEEEEEECCCEEEEEECCEEEEEEEECCCCCCC
T ss_conf             88877641676248897468708999899999998846338698


No 6  
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=99.95  E-value=1.6e-27  Score=183.27  Aligned_cols=118  Identities=24%  Similarity=0.405  Sum_probs=110.8

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH
Q ss_conf             9589859999999998750203788861013389999899799999678289999997-775268079994998778874
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR   79 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik   79 (385)
                      |||+|++++|.++|+++++++++|++.|||+|+||++++++|+++|||++++++++++ ++++++|+++|||+.|.+++|
T Consensus         1 Mk~~i~~~~L~~al~~v~~~i~~~~~~piL~~ili~~~~~~l~l~aTD~e~~i~~~i~~~~i~~~G~~~vpak~l~~iir   80 (120)
T d1vpka1           1 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEISGEARFVVPGDVIQKMVK   80 (120)
T ss_dssp             EEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEEEECEEEEEEC-CHHHHHT
T ss_pred             CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEEECEEEEEEEECCCCEEECCCCHHHHHHHHHHHH
T ss_conf             98999899999999999877268986267657699998999999995030357898046410001101034567999984


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCC
Q ss_conf             0777773047773367508999867820243036621143212
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK  122 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~  122 (385)
                      +||++ .+.+..+   ++++.|++++++|+++++|+++||.+|
T Consensus        81 ~lp~~-~v~l~~~---~~~l~I~~~~~~~~l~~~~~~~fP~ip  119 (120)
T d1vpka1          81 VLPDE-ITELSLE---GDALVISSGSTVFRITTMPADEFPEIT  119 (120)
T ss_dssp             TCCSS-EEEEEEE---TTEEEEEETTEEEEEECBCCTTSCCCC
T ss_pred             HCCCC-CEEEEEE---CCEEEEEECCEEEEECCCCHHHCCCCC
T ss_conf             39998-5899970---999999989849997488977877987


No 7  
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=99.32  E-value=7.5e-11  Score=82.08  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=97.6

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEEECCCCEEEEEHHHHHHHHHCC
Q ss_conf             58985999999999875020378886101338999989979999967828999999777526807999499877887407
Q gi|254780454|r    2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKL   81 (385)
Q Consensus         2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~i~~~G~~~v~a~~l~~iik~L   81 (385)
                      +|+|+.+.|.++|+.+.-+++...+.|+|.|++++..++++.+.|||+-.-.....+.+..++++++||+|.+.++.|-+
T Consensus         6 ~f~i~~~~L~~~I~~v~fA~s~d~~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~~~~iiP~k~l~el~k~l   85 (123)
T d1vpka2           6 TFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAEEQIENEEEASFLLSLKSMKEVQNVL   85 (123)
T ss_dssp             EEEEEHHHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETTEEEEEEECSSEEEEEEEECCCCSCEEEEEEHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHEEEEECCCCCCCEEEEEEEEEECCCEEEEEEEEEEEEEEEHHCCCCCCCCEEEEECHHHHHHHHH
T ss_conf             99998999999984564995267862128768999846834899985125322301202477652798621356777652


Q ss_pred             CCCC--CEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCC
Q ss_conf             7777--30477733675089998678202430366211432
Q gi|254780454|r   82 QDGA--QISFFKENELGTEVNISHGDSNFYLQSFPESEFPS  120 (385)
Q Consensus        82 ~~~~--~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~  120 (385)
                      ++..  .+.+..+   ++++.+++++..+.....+. .||.
T Consensus        86 ~~~~~~~v~i~~~---~~~i~~~~~~~~~~srlieG-~fPd  122 (123)
T d1vpka2          86 DNTTEPTITVRYD---GRRVSLSTNDVETVMRVVDA-EFPD  122 (123)
T ss_dssp             HTCCCSEEEEEEC---SSEEEEECSSEEEEEECCSS-CCCC
T ss_pred             CCCCCCEEEEEEC---CCEEEEEECCEEEEEEEECC-CCCC
T ss_conf             0035626999978---98999998999999976475-3879


No 8  
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=99.31  E-value=3.1e-12  Score=90.47  Aligned_cols=116  Identities=20%  Similarity=0.352  Sum_probs=97.1

Q ss_pred             EEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHH
Q ss_conf             45056113554202202300245565210116677617873489998534157666643578753310000010001222
Q gi|254780454|r  129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI  208 (385)
Q Consensus       129 ~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el  208 (385)
                      .|.++...|.++|+++..++++..++|+|+||+|+.+++  .+++.|||+-+-...+++. ....++..++||+|.+.++
T Consensus         2 k~~i~~~~L~~al~~v~~~i~~~~~~piL~~ili~~~~~--~l~l~aTD~e~~i~~~i~~-~~i~~~G~~~vpak~l~~i   78 (120)
T d1vpka1           2 KVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDG--NFYICATDLETGVKATVNA-AEISGEARFVVPGDVIQKM   78 (120)
T ss_dssp             EEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETT--EEEEEEECSSEEEEEECCC-SEEEECEEEEEEC-CHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECC--EEEEEEEECEEEEEEEECC-CCEEECCCCHHHHHHHHHH
T ss_conf             899989999999999987726898626765769999899--9999995030357898046-4100011010345679999


Q ss_pred             HHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCC-CCCCC
Q ss_conf             210277646433133455301002506999851266-55322
Q gi|254780454|r  209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG-EFPNY  249 (385)
Q Consensus       209 ~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~g-~yPdy  249 (385)
                      .|-+++  +.|++...++++.+++++..|..+++++ .||+.
T Consensus        79 ir~lp~--~~v~l~~~~~~l~I~~~~~~~~l~~~~~~~fP~i  118 (120)
T d1vpka1          79 VKVLPD--EITELSLEGDALVISSGSTVFRITTMPADEFPEI  118 (120)
T ss_dssp             HTTCCS--SEEEEEEETTEEEEEETTEEEEEECBCCTTSCCC
T ss_pred             HHHCCC--CCEEEEEECCEEEEEECCEEEEECCCCHHHCCCC
T ss_conf             843999--8589997099999998984999748897787798


No 9  
>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.15  E-value=8.9e-11  Score=81.62  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=98.0

Q ss_pred             EEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHH
Q ss_conf             45056113554202202300245565210116677617873489998534157666643578753310000010001222
Q gi|254780454|r  129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI  208 (385)
Q Consensus       129 ~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el  208 (385)
                      .|.++.+.|.+++..+..++++..+.|+|.||+++.+++  .+.+.|||+.+-...+++.. ...++..++||+|.+.++
T Consensus         2 kf~i~k~~L~~aL~~v~~~v~~k~~~PiL~~vli~~~~~--~l~l~aTDle~~i~~~i~~~-~v~~~G~~~vpak~l~di   78 (122)
T d1ok7a1           2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG--TLSLTGTDLEMEMVARVALV-QPHEPGATTVPARKFFDI   78 (122)
T ss_dssp             EEEEEHHHHHHHHHHHHCSCCSCCSSGGGGEEEEEEETT--EEEEEEECSSEEEEEEEECC-SCCBCEEEEEEHHHHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEEECC--EEEEEEECCCEEEEEEEEEC-CCCCCCEEEEEEHHHHHH
T ss_conf             899989999999999973607898704653589999899--99999954773899999751-557787799711888999


Q ss_pred             HHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECC-CCCCCCC
Q ss_conf             21027764643313345530100250699985126-6553221
Q gi|254780454|r  209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID-GEFPNYQ  250 (385)
Q Consensus       209 ~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~-g~yPdy~  250 (385)
                      .|-++++ ..+.+..+++++.++.++..|....++ ..||...
T Consensus        79 vr~lp~~-~~i~~~~~~~~l~i~~~~~~f~l~~~~~~~fP~ip  120 (122)
T d1ok7a1          79 CRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD  120 (122)
T ss_dssp             HHHSCTT-CEEEEEEETTEEEEEETTEEEEEECBCGGGSCCCC
T ss_pred             HHHCCCC-CCEEEEECCCEEEEEECCEEEEECCCCHHHCCCCC
T ss_conf             9749999-81899965998999989659997267978888999


No 10 
>d1ok7a2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.14  E-value=3.8e-09  Score=71.75  Aligned_cols=116  Identities=14%  Similarity=0.164  Sum_probs=96.4

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE-ECCCCEEEEEHHHHHHHHHC
Q ss_conf             58985999999999875020378886101338999989979999967828999999777-52680799949987788740
Q gi|254780454|r    2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIVRK   80 (385)
Q Consensus         2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~-i~~~G~~~v~a~~l~~iik~   80 (385)
                      .|+|+.++|.++|..+.-+++...+.|+|.|++++..++++.+.|||+-.-.....+.+ ..+...++||++.+.++.|.
T Consensus         5 ~~~i~~~~l~~~i~~t~~A~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~~~~~iip~k~l~el~~~   84 (122)
T d1ok7a2           5 EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRM   84 (122)
T ss_dssp             EEEEEHHHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHT
T ss_pred             EEEECHHHHHHHHHHEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99998999999984475897157773104768999808804899816848788886147775533321341678888776


Q ss_pred             CCCC-CCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCC
Q ss_conf             7777-7304777336750899986782024303662114321
Q gi|254780454|r   81 LQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST  121 (385)
Q Consensus        81 L~~~-~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~  121 (385)
                      ++++ ..+.+...+   +++.+++++..+.-..++. .||..
T Consensus        85 l~~~~~~v~i~~~~---~~i~f~~~~~~~~srlIeG-~fPdY  122 (122)
T d1ok7a2          85 LDGGDNPLRVQIGS---NNIRAHVGDFIFTSKLVDG-RFPDY  122 (122)
T ss_dssp             CCCCSSEEEEEEES---SEEEEEETTEEEEEECCCS-CCCCG
T ss_pred             HCCCCCEEEEEECC---CEEEEEECCEEEEEEEECC-CCCCC
T ss_conf             41676248897468---7089998999999988463-38698


No 11 
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=98.17  E-value=4.8e-05  Score=46.83  Aligned_cols=106  Identities=14%  Similarity=0.294  Sum_probs=76.3

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEE-EEEEEEEEEEC-CCCEEEEEHHHHHHHHH
Q ss_conf             58985999999999875020378886101338999989979999967828-99999977752-68079994998778874
Q gi|254780454|r    2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI-EITGAIPASVD-VCGSITVSAHLLYDIVR   79 (385)
Q Consensus         2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~-~i~~~i~~~i~-~~G~~~v~a~~l~~iik   79 (385)
                      ++.+++.+|.++|+.++-+...++.     ++.+..+++.+++++.+.+. .....++++.+ ++-++.++++.|.+.++
T Consensus        11 ~v~v~r~~l~~al~Rv~~~s~~~~~-----~V~l~~~~~~l~l~s~~~e~g~~~e~i~~~~~Ge~~~i~fN~~yL~d~L~   85 (123)
T d1vpka3          11 KVVVSRKELRESLKRVMVIASKGSE-----SVKFEIEENVMRLVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLK   85 (123)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHTTTTC-----CEEEEECSSEEEEEEEETTTEEEEEEEECEEEECCEEEEECHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCC-----CEEEEECCCCEEEEECCCCCHHCCCCCCCCCCCCCEEEEECHHHHHHHHH
T ss_conf             9999999999999999988437776-----35899638814888626652000411010025777699988999999995


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEE-CCCEEEEECCC
Q ss_conf             077777304777336750899986-78202430366
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISH-GDSNFYLQSFP  114 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~-~~~~~~l~~~~  114 (385)
                      .+.+ ..+.+...+..++ +.|+. +...|..-.||
T Consensus        86 ~~~~-~~V~l~~~~~~~p-~~i~~~~~~~~~~liMP  119 (123)
T d1vpka3          86 HIET-EEIEMNFVDSTSP-CQINPLDISGYLYIVMP  119 (123)
T ss_dssp             HCCS-SEEEEEESCTTSC-EEEEETTCCSEEEEECC
T ss_pred             HCCC-CEEEEEECCCCCC-EEEECCCCCCEEEEEEE
T ss_conf             4789-8799998689998-89963899953899984


No 12 
>d1ok7a3 d.131.1.1 (A:245-366) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=98.03  E-value=0.00015  Score=43.79  Aligned_cols=95  Identities=16%  Similarity=0.218  Sum_probs=71.8

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEE-EEEEEEEEC-CCCEEEEEHHHHHHHHH
Q ss_conf             5898599999999987502037888610133899998997999996782899-999977752-68079994998778874
Q gi|254780454|r    2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASVD-VCGSITVSAHLLYDIVR   79 (385)
Q Consensus         2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i-~~~i~~~i~-~~G~~~v~a~~l~~iik   79 (385)
                      ++.+++++|.++|+.++-+...++     .++.+..++++|++++.+.+.+- ...++++.+ ++-++.++++.|.|+++
T Consensus        11 ~i~v~r~el~~al~R~s~~~~~~~-----~~v~l~~~~~~l~lss~~~e~g~~~e~i~~~~~G~~~~I~fN~~yL~d~L~   85 (122)
T d1ok7a3          11 HLEAGCDLLKQAFARAAILSNEKF-----RGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLN   85 (122)
T ss_dssp             EEEEEHHHHHHHHHHHHTTSCTTS-----CEEEEEEETTEEEEEEECTTCCEEEEEEECBCCSCCEEEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHHCCCC-----CEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECHHHHHHHHH
T ss_conf             999989999999999998851788-----559999837703999757554304478731358844899999999999996


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf             077777304777336750899986
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISH  103 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~  103 (385)
                      .+++ ..+.+...+..++ +.|+.
T Consensus        86 ~~~~-~~i~i~~~~~~~p-~~i~~  107 (122)
T d1ok7a3          86 ALKC-ENVRMMLTDSVSS-VQIED  107 (122)
T ss_dssp             HHCS-SEEEEEECCTTSC-EEEEE
T ss_pred             CCCC-CEEEEEECCCCCC-EEEEC
T ss_conf             0799-8799998389997-89857


No 13 
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.99  E-value=0.00026  Score=42.35  Aligned_cols=111  Identities=16%  Similarity=0.248  Sum_probs=85.1

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEE----EEECCCCEEEEECHHHHHH
Q ss_conf             566179984899888898874101235553025651765999980787326899999----8962884399963889988
Q gi|254780454|r  256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN----VYYNECPMDICFNYKYLLE  331 (385)
Q Consensus       256 ~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~----~~~~G~~~~i~fN~~yl~d  331 (385)
                      +++..+.+.-.+|.++++.+..+++    .|.+..+++.+.+++.+ |.|++.-.+.    ..+..++.+-.|..+||..
T Consensus         4 e~~~~i~m~s~~f~~~~~dl~~~~d----~v~i~~~~~~i~f~~~g-d~g~~~~~~~~~~~~~~~~~~~~~~fsl~YL~~   78 (122)
T d1rwza2           4 ELPAKIVMDAGEFKKAIAAADKISD----QVIFRSDKEGFRIEAKG-DVDSIVFHMTETELIEFNGGEARSMFSVDYLKE   78 (122)
T ss_dssp             CCSEEEEEEHHHHHHHHHHHHTTCS----EEEEEEETTEEEEEEEC-SSCEEEEEECGGGSSEECCCCEEEEEEHHHHHH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCC----EEEEEECCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCEEEEEEHHHHHH
T ss_conf             8408999998999999999984299----79999839999999974-575799997687641112552068996899998


Q ss_pred             HHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             987357533466338999658987589943776544455566763799832
Q gi|254780454|r  332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       332 ~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP  382 (385)
                      +.|+....    +.|++++. ...|+.+.-.=.      ++...-.|.|-|
T Consensus        79 ~~K~~~ls----~~v~i~~~-~~~Pl~l~y~i~------~~~g~i~fylAP  118 (122)
T d1rwza2          79 FCKVAGSG----DLLTIHLG-TNYPVRLVFELV------GGRAKVEYILAP  118 (122)
T ss_dssp             HGGGCCTT----CEEEEEEC-SSSCEEEEEEET------TTTEEEEEEECC
T ss_pred             HHHHCCCC----CEEEEEEC-CCCCEEEEEEEC------CCCEEEEEEECC
T ss_conf             76041589----87999981-898899999976------896899999763


No 14 
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.97  E-value=0.00039  Score=41.31  Aligned_cols=101  Identities=24%  Similarity=0.390  Sum_probs=82.3

Q ss_pred             CCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEE-----------EE-ECCCC
Q ss_conf             355-566179984899888898874101235553025651765999980787326899999-----------89-62884
Q gi|254780454|r  253 IPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN-----------VY-YNECP  319 (385)
Q Consensus       253 ip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~-----------~~-~~G~~  319 (385)
                      ||. +++..+++.-.+|.++++.+..+.+.    |.+..+++++.+++.+ +.|++.-.+.           .. -.+++
T Consensus         2 IP~~ey~~~i~m~S~~f~~~~kdl~~~gd~----i~i~~~~~~i~f~~~g-d~g~~~i~i~~~~~~~~~~~~~~~~~~~~   76 (132)
T d1plqa2           2 IEELQYDSTLSLPSSEFSKIVRDLSQLSDS----INIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQP   76 (132)
T ss_dssp             CCCSCCSEEEEEEHHHHHHHHHHHHTTCSE----EEEEEETTEEEEEEEC-SSCEEEEEECCBCCTTCGGGCBEEEESSC
T ss_pred             CCCCCCCEEEEEEHHHHHHHHHHHHHCCCE----EEEEECCCEEEEEEEC-CCCEEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf             898665579998999999999999864994----9999859968999972-55359999922577666542125511642


Q ss_pred             EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCC
Q ss_conf             39996388998898735753346633899965898758994377
Q gi|254780454|r  320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD  363 (385)
Q Consensus       320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~  363 (385)
                      ++-.|..+||..+.++..-    .+.|++++.. ..|+.+.-.-
T Consensus        77 ~~~~ysl~yL~~~~K~~~l----s~~V~i~~~~-~~Pl~~~y~i  115 (132)
T d1plqa2          77 VDLTFGAKYLLDIIKGSSL----SDRVGIRLSS-EAPALFQFDL  115 (132)
T ss_dssp             EEEEEEHHHHHHHGGGGGT----CSEEEEEECS-SSCEEEEEEE
T ss_pred             EEEEEEHHHHHHHHCCCCC----CCEEEEEEEC-CCCEEEEEEE
T ss_conf             0439888999987672468----9989999948-9889999996


No 15 
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=97.95  E-value=0.00026  Score=42.44  Aligned_cols=110  Identities=15%  Similarity=0.250  Sum_probs=85.4

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE------EE-CCCCEEEEECHHH
Q ss_conf             5661799848998888988741012355530256517659999807873268999998------96-2884399963889
Q gi|254780454|r  256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV------YY-NECPMDICFNYKY  328 (385)
Q Consensus       256 ~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~------~~-~G~~~~i~fN~~y  328 (385)
                      +++..+.++-.+|.++++.+..+++.    |.++.+++.+.+++.+ |.|++...+..      .+ .+++++..|..+|
T Consensus         4 ~~~~~i~~~s~~f~~ii~~l~~~~d~----i~i~~~~~~i~f~~~g-d~g~~~v~~~~~~~~~~~~~~~~~~~~~ysl~y   78 (121)
T d1iz5a2           4 PFTAKVVVLGEVLKAAVKAASLVSDS----IKFIARENEFIMKAEG-ETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSY   78 (121)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHTTTCSE----EEEEEETTEEEEEEEC-SSCEEEEEEETTTTSSSEEEESSCEEEEEEHHH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCE----EEEEECCCEEEEEEEC-CCCEEEEEECCCCCCCEEEECCCCEEEEEEHHH
T ss_conf             84089999999999999998731896----9999829999999984-476799999479874279972885689998899


Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             988987357533466338999658987589943776544455566763799832
Q gi|254780454|r  329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       329 l~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP  382 (385)
                      |..+.++..-    .+.|++++. ...|+.+.-.-.+       .....|.|-|
T Consensus        79 L~~~~K~~~l----s~~V~i~~~-~~~Pl~l~y~~~~-------~g~i~f~LAP  120 (121)
T d1iz5a2          79 LSDMVKGLGK----ADEVTIKFG-NEMPMQMEYYIRD-------EGRLTFLLAP  120 (121)
T ss_dssp             HHHHHTTSCT----TCEEEEEEC-TTCCEEEEEEETT-------TEEEEEEECC
T ss_pred             HHHHHHHCCC----CCEEEEEEC-CCCCEEEEEEECC-------CCEEEEEECC
T ss_conf             8987612258----998999986-9988999999689-------9489999826


No 16 
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.93  E-value=0.00025  Score=42.47  Aligned_cols=113  Identities=17%  Similarity=0.253  Sum_probs=86.0

Q ss_pred             CCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE-----------E-ECCCC
Q ss_conf             355-5661799848998888988741012355530256517659999807873268999998-----------9-62884
Q gi|254780454|r  253 IPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV-----------Y-YNECP  319 (385)
Q Consensus       253 ip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~-----------~-~~G~~  319 (385)
                      ||+ +++..+.+.-.+|.+.++-+..+.+    .+.+..+++.+.+++.+ |.|+++..+.-           . -.+++
T Consensus         2 IP~~ey~~~i~~~s~~f~~~~kdl~~~gd----~v~i~~~~~~i~~~~~g-d~g~~~~~i~~~~~~~~~~~~~~i~~~~~   76 (129)
T d1u7ba2           2 IPEQEYSCVVKMPSGEFARICRDLSHIGD----AVVISCAKDGVKFSASG-ELGNGNIKLSQTSNVDKEEEAVTIEMNEP   76 (129)
T ss_dssp             CCCCCCSEEEEEEHHHHHHHHHHHHTTCS----EEEEEEETTEEEEEEEE-TTEEEEEEECCCC----CCSCCEEEESSC
T ss_pred             CCCCCCCEEEEEEHHHHHHHHHHHHHHCC----HHEEEECCCEEEEEEEC-CCCEEEEEEECCCCCCCCCCEEEEECCCC
T ss_conf             79977768999998999999999987170----54178658727999862-66427788703566667542057613754


Q ss_pred             EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             399963889988987357533466338999658987589943776544455566763799832
Q gi|254780454|r  320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP  382 (385)
                      ++..|..+||..+.+...-    .+.|.+++ +...|+.++-.-.+       .-...+.|-|
T Consensus        77 ~~~~fsl~YL~~~~K~~~l----s~~v~i~~-~~~~Pl~i~y~~~~-------~g~l~fyLAP  127 (129)
T d1u7ba2          77 VQLTFALRYLNFFTKATPL----SSTVTLSM-SADVPLVVEYKIAD-------MGHLKYYLAP  127 (129)
T ss_dssp             EEEEEEHHHHHHHGGGGGG----CSEEEEEE-CTTSCEEEEEEETT-------TEEEEEEECC
T ss_pred             CEEEEEHHHHHHHHCHHCC----CCEEEEEE-CCCCCEEEEEEECC-------CCEEEEEECC
T ss_conf             2169878999987465347----88399998-59988999998189-------9589999843


No 17 
>d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=97.59  E-value=0.0019  Score=37.09  Aligned_cols=109  Identities=15%  Similarity=0.215  Sum_probs=81.7

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEE------EEE-CCCCEEEEECHHH
Q ss_conf             566179984899888898874101235553025651765999980787326899999------896-2884399963889
Q gi|254780454|r  256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN------VYY-NECPMDICFNYKY  328 (385)
Q Consensus       256 ~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~------~~~-~G~~~~i~fN~~y  328 (385)
                      +++..+++.-.+|.+.++.+..+++    .|.+..+++.+.+++.+.  |.+...+.      ..+ .+++.+..|..+|
T Consensus         1 Ey~~~i~m~s~~f~~ii~dl~~~~d----~v~i~~~~~~i~f~~~gd--~~~~~~~~~~~~~~~~~~~~~~~~~~ysl~y   74 (119)
T d1ud9a2           1 EFDIKATINASGLKNAIGEIAEVAD----TLLISGNEEKVVVKGEGE--NKVEVEFSKDTGSLADIEFNKESSSAYDVEY   74 (119)
T ss_dssp             CCSEEEEEEHHHHHHHHHHHHHHCS----EEEEEECSSEEEEEESSS--SCCCEEEEGGGTCEEEEEESSCEEEEEEHHH
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHCCC----EEEEEECCCEEEEEEECC--CCEEEEEECCCCCEEEEECCCCEEEEEEHHH
T ss_conf             9887999999999999999984099----899999189999999738--8379999448985179862876689998899


Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             988987357533466338999658987589943776544455566763799832
Q gi|254780454|r  329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       329 l~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP  382 (385)
                      |..+.++..-    .+.|.+++ +...|+.++-.-.       +.....|.|.|
T Consensus        75 L~~~~K~~~l----s~~v~i~~-~~d~Pl~l~y~l~-------~~g~i~f~lAP  116 (119)
T d1ud9a2          75 LNDIISLTKL----SDYVKVAF-ADQKPMQLEFNME-------GGGKVTYLLAP  116 (119)
T ss_dssp             HHHTGGGGGG----CSEEEEEE-CTTSCEEEEEECG-------GGCEEEEEECC
T ss_pred             HHHHHHHCCC----CCEEEEEE-CCCCCEEEEEEEC-------CCEEEEEEEEE
T ss_conf             8998755068----98799998-7996899999958-------98099999920


No 18 
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.47  E-value=0.0028  Score=36.16  Aligned_cols=110  Identities=12%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHH
Q ss_conf             5898599999999987502037888610133899998997999996782--899999977------75268079994998
Q gi|254780454|r    2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHL   73 (385)
Q Consensus         2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~   73 (385)
                      +++++.+.|...++.++.++         ..+-++...+++.++|.|..  .-+...+++      +++++-.+.|+-..
T Consensus         3 ~~~~~a~~~k~i~~~l~~l~---------~e~~~~~~~~Gi~iq~mD~s~v~Lv~l~L~~~~F~~Y~~~~~~~iGv~~~~   73 (122)
T d1rwza1           3 DVIMTGELLKTVTRAIVALV---------SEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDR   73 (122)
T ss_dssp             EEEEEHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHH
T ss_pred             EEEECHHHHHHHHHHHHHHH---------CEEEEEECCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCEEEEEEHHH
T ss_conf             69962899999999999874---------538999906837999967872899999977246718960898799999999


Q ss_pred             HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCC
Q ss_conf             7788740777773047773367508999867820243036621143212
Q gi|254780454|r   74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK  122 (385)
Q Consensus        74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~  122 (385)
                      |..++|.+..+..+.+..++  ++.+.+..++.+|+++.+|++.-|.-|
T Consensus        74 l~kilk~~~~~d~l~l~~~~--~~~l~i~~~~~~f~l~LlD~~s~~~eP  120 (122)
T d1rwza1          74 IFDISKSISTKDLVELIVED--ESTLKVKFGSVEYKVALIDPSAIRKEP  120 (122)
T ss_dssp             HHHHHTTSCTTSEEEEEESS--SSEEEEEETTEEEEEECBCGGGSCCCC
T ss_pred             HHHHHHHCCCCCEEEEEECC--CCEEEEEEECCEEEEECCCCCCCCCCC
T ss_conf             99999618899779999769--998999990508999670654456998


No 19 
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=95.92  E-value=0.042  Score=28.97  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=36.9

Q ss_pred             CEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf             33899998997999996782--899999977------7526807999499877887407777730477733675089998
Q gi|254780454|r   31 CHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS  102 (385)
Q Consensus        31 ~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~  102 (385)
                      ..+-+...++++.+.+.|..  .-+...+++      +++++-.+.|+-..|..++|.+..+..+.+..+++....+.+.
T Consensus        24 ~e~~l~~~~~Gi~iq~mD~shv~lv~l~L~~~~F~~Y~~~~~~~iGi~~~~L~kilk~~~~~d~l~l~~~~~~~l~i~~~  103 (119)
T d1iz5a1          24 DEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQ  103 (119)
T ss_dssp             SEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHTTCCTTCEEEEEECSSSEEEEEEE
T ss_pred             CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEE
T ss_conf             62899990683899996789589999999878885771377779879999999999617799889999768988999996


Q ss_pred             EC-CCEEEEECCCCC
Q ss_conf             67-820243036621
Q gi|254780454|r  103 HG-DSNFYLQSFPES  116 (385)
Q Consensus       103 ~~-~~~~~l~~~~~~  116 (385)
                      .. ..+|+++.+|.+
T Consensus       104 ~~~~~~f~l~Lidid  118 (119)
T d1iz5a1         104 GTATRTFRVPLIDVE  118 (119)
T ss_dssp             SSSEEEEEEECBCCC
T ss_pred             CCCEEEEEEEEECCC
T ss_conf             891579997605578


No 20 
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=94.70  E-value=0.11  Score=26.54  Aligned_cols=81  Identities=10%  Similarity=0.230  Sum_probs=35.5

Q ss_pred             EHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEE-EEEEEEE----EEC-CCCEEEEECHHHHHHHHHHCC
Q ss_conf             4899888898874101235553025651765999980787326-8999998----962-884399963889988987357
Q gi|254780454|r  264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNV----YYN-ECPMDICFNYKYLLEIIDNIS  337 (385)
Q Consensus       264 ~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~-~~e~i~~----~~~-G~~~~i~fN~~yl~d~L~~~~  337 (385)
                      +.+.|...++-+.-+.++    +.|.++++++.+.+-++..-. ..-.++.    .|+ .++..+|+|...|..+|+...
T Consensus         7 da~~fk~i~~~lk~l~~e----~~~~~~~~Gi~iq~mD~s~v~lv~l~L~~~~F~~Y~~~~~~~igv~~~~l~kilk~~~   82 (119)
T d1ud9a1           7 DVRDLKAIIQALLKLVDE----ALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKAAK   82 (119)
T ss_dssp             CHHHHHHHHHHHHHHCSE----EEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHCE----EEEEECCCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHCC
T ss_conf             789999999999987544----9999916827999967887899999967787864056877899999999999996188


Q ss_pred             CCCCCCCEEEEEECC
Q ss_conf             533466338999658
Q gi|254780454|r  338 SDEVVDDEVVFRLDS  352 (385)
Q Consensus       338 ~~~~~~e~i~l~~~~  352 (385)
                      .+    +.++|..++
T Consensus        83 ~~----d~l~l~~~~   93 (119)
T d1ud9a1          83 RK----EEIIIDADS   93 (119)
T ss_dssp             SC----CCEEEEEEE
T ss_pred             CC----CEEEEEECC
T ss_conf             99----889999679


No 21 
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.69  E-value=0.11  Score=26.53  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=40.0

Q ss_pred             EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEEE------ECCCCEEEEEHHHHHHH
Q ss_conf             599999999987502037888610133899998997999996782--8999999777------52680799949987788
Q gi|254780454|r    6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPAS------VDVCGSITVSAHLLYDI   77 (385)
Q Consensus         6 ~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~~------i~~~G~~~v~a~~l~~i   77 (385)
                      +-..|...++.++.++         ..+-++..++++.+.+.|..  .-+...++++      ++++-.+.|+-..|..|
T Consensus         8 ~a~~fk~i~~~lk~l~---------~~~~~~~~~~Gi~iq~mD~shv~lv~l~L~~~~F~~Y~~~~~~~iGi~~~~l~kI   78 (126)
T d1plqa1           8 EASLFKRIIDGFKDCV---------QLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKI   78 (126)
T ss_dssp             SHHHHHHHHHHHTTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH---------CEEEEEECCCEEEEEEECCCCEEEEEEEECHHHCCEEEECCCEEEEEEHHHHHHH
T ss_conf             6689999999998874---------5399999778699999688858999999887879604325678999998998999


Q ss_pred             HHCCCCCCCEEEEEEC
Q ss_conf             7407777730477733
Q gi|254780454|r   78 VRKLQDGAQISFFKEN   93 (385)
Q Consensus        78 ik~L~~~~~i~~~~~~   93 (385)
                      +|....+..+.+..++
T Consensus        79 lk~~~~~d~l~l~~~~   94 (126)
T d1plqa1          79 LRCGNNTDTLTLIADN   94 (126)
T ss_dssp             TTCSTTTSEEEEEECS
T ss_pred             HHHCCCCCEEEEEEEC
T ss_conf             8536899889999908


No 22 
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.30  E-value=0.28  Score=24.04  Aligned_cols=79  Identities=10%  Similarity=0.087  Sum_probs=39.6

Q ss_pred             EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHHHHHH
Q ss_conf             599999999987502037888610133899998997999996782--899999977------752680799949987788
Q gi|254780454|r    6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHLLYDI   77 (385)
Q Consensus         6 ~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~l~~i   77 (385)
                      +...|...++.++.++         ..+-+...++++.+.|.|..  .-+...++.      +++++-.+.|+...|..+
T Consensus         8 ~a~~fk~i~~~lk~l~---------~e~~~~~~~~Gi~iq~mD~shv~Lv~l~L~~~~F~~Y~~~~~~~iGv~~~~l~kI   78 (126)
T d1u7ba1           8 QGSILKKVLEALKDLI---------NEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKI   78 (126)
T ss_dssp             CTHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH---------CEEEEEECCCEEEEEEECCCCEEEEEEEECHHHCCEEEECCCEEEEEEHHHHHHH
T ss_conf             5799999999998875---------4289999079689999788858999999997988336875777998989999999


Q ss_pred             HHCCCCCCCEEEEEEC
Q ss_conf             7407777730477733
Q gi|254780454|r   78 VRKLQDGAQISFFKEN   93 (385)
Q Consensus        78 ik~L~~~~~i~~~~~~   93 (385)
                      +|.+.++..+.+..++
T Consensus        79 lk~~~~~d~l~l~~~~   94 (126)
T d1u7ba1          79 LKCAGNEDIITLRAED   94 (126)
T ss_dssp             HTTSCTTCEEEEEECT
T ss_pred             HHHCCCCCEEEEEEEC
T ss_conf             9516899789999947


No 23 
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=52.27  E-value=2  Score=18.76  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=33.3

Q ss_pred             HHHHHHHCCCCCCCCCCCCC-CCCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf             12222102776464331334-55301002506999851266553221013
Q gi|254780454|r  205 VGEILRILSSKDSSVKVSLS-ESRIHLNIESLSMSVRLIDGEFPNYQNVI  253 (385)
Q Consensus       205 l~el~k~l~~~~~~v~i~~~-~~~i~~~~~~~~~~srLi~g~yPdy~~vi  253 (385)
                      .+||+..+.+.-.+|++.-+ +..+.+..+...+++|+-+|.|||.+.+.
T Consensus        23 aqeLl~tF~~~i~evsL~P~~~G~FeV~v~g~li~srk~~ggFPd~kelk   72 (86)
T d2fa8a1          23 AQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELK   72 (86)
T ss_dssp             HHHHHHHHGGGCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHH
T ss_pred             HHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf             99999867766761999988991799998999999963579899889999


No 24 
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=22.94  E-value=16  Score=13.32  Aligned_cols=10  Identities=40%  Similarity=0.654  Sum_probs=4.7

Q ss_pred             CCCCCHHHHH
Q ss_conf             0010001222
Q gi|254780454|r  199 IVPRKAVGEI  208 (385)
Q Consensus       199 iiP~k~l~el  208 (385)
                      .=|++.|.|+
T Consensus       130 ~ePR~VL~Ef  139 (197)
T d2qdya1         130 REPRKVLSEM  139 (197)
T ss_dssp             TCHHHHHHHH
T ss_pred             HHHHHHHHHC
T ss_conf             6679999982


Done!