RPSBLAST alignment of GI: 254780454 and SCOP domain: d1vpka2

Alignment

 Score = 88.3 bits (218), Expect = 9e-19
 Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 5/126 (3%)

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           E   +FE+ +S+L+ +VE+  FA A +E    LNG+F+ +++    L  VA+DG RLA+A
Sbjct: 2   ESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNL--LRLVASDGFRLALA 59

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSVRLID 243
           E  I  +  +  S ++  K++ E+  +L +    ++ V     R+ L+   +   +R++D
Sbjct: 60  EEQI--ENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETVMRVVD 117

Query: 244 GEFPNY 249
            EFP+Y
Sbjct: 118 AEFPDY 123

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]