RPSBLAST alignment of GI: 254780454 and SCOP domain: d1vpka3

Alignment

 Score = 92.0 bits (228), Expect = 7e-20
 Identities = 29/136 (21%), Positives = 65/136 (47%), Gaps = 14/136 (10%)

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIE 309
           + VIP +   ++ V+   LR+++ RV +++S   ++VK  +  + + +   +PD G+ ++
Sbjct: 1   KRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVD 60

Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369
            + V      + I FN K++ +++ +I +     +E+      S S   I   D      
Sbjct: 61  EVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQINPLDIS---- 111

Query: 370 KDNKVNAFYVLMPMRI 385
                   Y++MP+R+
Sbjct: 112 -----GYLYIVMPIRL 122

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]