BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
(385 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 385
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS
Sbjct: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS
Sbjct: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR
Sbjct: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR
Sbjct: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD
Sbjct: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR
Sbjct: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
GKDKDSKNNKDNKVNAFYVLMPMRI
Sbjct: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 817
Score = 26.6 bits (57), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 22/100 (22%)
Query: 153 IRYYLNGIFFHINEEDLKLCAVA---TDGHRLAVAEVDIVAQIAKMPSIIVP-RKAVGEI 208
+ +YLN IFF N + A+ L + E +A + K PS P RK I
Sbjct: 168 LEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAI 227
Query: 209 LR------------------ILSSKDSSVKVSLSESRIHL 230
R L +K +K+++ + R HL
Sbjct: 228 ARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHL 267
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 165 NEEDLKLCAVATDGHRLAVAE--VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222
N E+ ++ A+A H L E + ++A AK R + + L KDS V+ +
Sbjct: 1492 NPEEARVIALAVKDHALRYPEESLGVIAMNAKQ------RDLIESTINKLCRKDSEVEKA 1545
Query: 223 LSESRIH 229
+S+ R+H
Sbjct: 1546 ISKLRMH 1552
>gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 243
Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI---IDNIS 337
VR+ +LSL D LC+ + D + +N++ I FNY EI I NI
Sbjct: 100 VRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLF-------IAFNYSSRDEISRAIKNIF 152
Query: 338 SD 339
D
Sbjct: 153 QD 154
>gi|254781037|ref|YP_003065450.1| porphobilinogen deaminase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 307
Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH 103
+ G I + H D+ KL G QIS + E +V ISH
Sbjct: 73 ISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISH 113
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130
+N+ D +F++ +++ P KEE+ +SF
Sbjct: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSF 32
>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 465
Score = 23.5 bits (49), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305
R+ I+S+ + ++L ++SD +D PD+G
Sbjct: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1040
Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 42 LEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG 96
LE+ G I+I+ IP S + SI S L + + KL D I+ ++ L
Sbjct: 404 LELTRFGINIDISAGIPLSTTLHSSILTS---LLNAIFKLNDFMAIATLVKHPLA 455
>gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter asiaticus
str. psy62]
Length = 682
Score = 23.1 bits (48), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381
D++ +E +D + +SNSSVF++ + + + D+ V + M
Sbjct: 81 DDLEDEEGSEDSLDLASSASNSSVFLQKRKDSADRSTDDPVRMYLREM 128
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234,103
Number of Sequences: 1233
Number of extensions: 9306
Number of successful extensions: 35
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 12
length of query: 385
length of database: 328,796
effective HSP length: 76
effective length of query: 309
effective length of database: 235,088
effective search space: 72642192
effective search space used: 72642192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)