Query gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 418
No_of_seqs 127 out of 1031
Neff 6.7
Searched_HMMs 39220
Date Sun May 29 18:20:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780455.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05321 nicotinate phosphorib 100.0 0 0 897.2 41.6 386 6-417 3-394 (400)
2 cd01401 PncB_like Nicotinate p 100.0 0 0 847.8 39.3 372 13-400 1-377 (377)
3 TIGR01514 NAPRTase nicotinate 100.0 0 0 841.4 34.8 396 11-415 1-429 (430)
4 TIGR01513 NAPRTase_put putativ 100.0 0 0 795.5 32.8 353 16-411 2-421 (523)
5 PRK09243 nicotinate phosphorib 100.0 0 0 715.2 33.5 342 10-409 6-368 (466)
6 PRK12484 nicotinate phosphorib 100.0 0 0 713.6 33.8 334 14-407 5-353 (443)
7 cd01570 NAPRTase_A Nicotinate 100.0 0 0 665.5 34.6 310 16-382 2-327 (327)
8 COG1488 PncB Nicotinic acid ph 100.0 0 0 657.5 36.6 356 7-415 6-376 (405)
9 cd01567 NAPRTase_PncB Nicotina 100.0 0 0 608.8 36.3 331 15-380 1-343 (343)
10 KOG2511 consensus 100.0 0 0 575.0 16.2 374 9-417 3-401 (420)
11 PRK08662 nicotinate phosphorib 100.0 0 0 454.7 34.5 322 1-409 1-332 (343)
12 cd01571 NAPRTase_B Nicotinate 100.0 0 0 449.6 30.6 290 16-393 2-300 (302)
13 PRK07188 nicotinate phosphorib 100.0 0 0 409.6 28.2 307 10-409 17-354 (355)
14 pfam04095 NAPRTase Nicotinate 100.0 0 0 418.9 17.2 230 180-417 1-243 (243)
15 PRK09198 putative nicotinate p 100.0 2.6E-40 7E-45 295.9 27.1 356 12-400 5-406 (462)
16 cd01569 PBEF_like pre-B-cell c 100.0 1.8E-39 4.6E-44 290.1 24.0 344 15-391 1-394 (407)
17 cd00516 PRTase_typeII Phosphor 100.0 1.2E-37 3E-42 277.7 23.1 275 19-380 1-281 (281)
18 PRK08385 nicotinate-nucleotide 98.5 0.00011 2.9E-09 51.5 19.0 246 34-383 28-277 (279)
19 PRK05848 nicotinate-nucleotide 98.3 0.0003 7.6E-09 48.6 18.4 267 9-381 4-271 (272)
20 cd01568 QPRTase_NadC Quinolina 97.9 0.003 7.7E-08 41.8 16.2 248 10-355 2-256 (269)
21 cd01573 modD_like ModD; Quinol 97.6 0.0081 2.1E-07 38.8 21.1 246 34-381 25-272 (272)
22 pfam01729 QRPTase_C Quinolinat 95.3 0.26 6.6E-06 28.5 12.4 142 179-355 14-156 (169)
23 cd01572 QPRTase Quinolinate ph 94.7 0.38 9.7E-06 27.4 14.2 246 10-354 2-254 (268)
24 PRK06978 nicotinate-nucleotide 93.7 0.58 1.5E-05 26.1 15.1 258 11-383 22-288 (288)
25 PRK07428 nicotinate-nucleotide 92.4 0.9 2.3E-05 24.8 17.6 204 108-382 77-284 (285)
26 PRK05742 nicotinate-nucleotide 90.1 1.5 3.8E-05 23.3 17.8 262 9-381 10-276 (277)
27 TIGR00078 nadC nicotinate-nucl 80.7 4.3 0.00011 20.2 6.2 232 35-381 26-276 (276)
28 KOG0425 consensus 77.8 1.4 3.5E-05 23.6 1.8 54 103-156 72-142 (171)
29 TIGR02402 trehalose_TreZ malto 77.6 4.4 0.00011 20.1 4.3 54 281-337 236-301 (564)
30 pfam02749 QRPTase_N Quinolinat 76.8 4.4 0.00011 20.1 4.2 73 34-141 14-86 (88)
31 PRK13344 spxA transcriptional 72.4 6.3 0.00016 19.0 4.1 41 305-346 12-52 (132)
32 PRK03103 DNA polymerase IV; Re 72.2 7.1 0.00018 18.6 5.3 30 94-125 87-116 (410)
33 TIGR01235 pyruv_carbox pyruvat 70.1 2.2 5.5E-05 22.2 1.3 32 328-363 732-765 (1169)
34 PRK12559 transcriptional regul 69.4 5.2 0.00013 19.6 3.1 39 305-344 12-50 (131)
35 PRK06106 nicotinate-nucleotide 67.6 8.9 0.00023 18.0 15.3 235 10-342 11-256 (281)
36 PRK07896 nicotinate-nucleotide 67.4 9 0.00023 17.9 16.5 243 9-342 15-265 (288)
37 PRK03609 umuC DNA polymerase V 66.8 9.2 0.00024 17.9 5.2 13 221-233 196-208 (422)
38 TIGR01485 SPP_plant-cyano sucr 65.7 4.6 0.00012 20.0 2.2 37 294-333 126-162 (257)
39 TIGR03156 GTP_HflX GTP-binding 62.1 11 0.00029 17.3 9.6 82 264-345 233-328 (351)
40 COG0825 AccA Acetyl-CoA carbox 60.3 6.8 0.00017 18.8 2.3 61 209-278 102-162 (317)
41 cd02933 OYE_like_FMN Old yello 58.9 13 0.00032 16.9 7.1 33 325-360 288-320 (338)
42 PRK03352 DNA polymerase IV; Va 58.7 13 0.00033 16.9 8.6 32 93-124 89-120 (345)
43 TIGR02109 PQQ_syn_pqqE coenzym 58.6 8.1 0.00021 18.2 2.4 31 91-121 37-68 (363)
44 TIGR01735 FGAM_synt phosphorib 57.3 13 0.00033 16.9 3.2 57 24-83 148-207 (1401)
45 KOG2550 consensus 54.9 15 0.00038 16.5 5.1 94 289-391 261-359 (503)
46 PRK02240 GTP cyclohydrolase II 54.0 15 0.00039 16.4 3.9 32 324-355 188-221 (254)
47 PRK07807 inositol-5-monophosph 53.8 13 0.00034 16.8 2.9 96 7-123 43-138 (479)
48 cd03033 ArsC_15kD Arsenate Red 53.7 15 0.00039 16.3 4.8 37 305-342 12-48 (113)
49 pfam05165 GGDN GGDN family. I 52.5 16 0.00041 16.2 3.8 32 324-355 181-214 (246)
50 PRK11522 putrescine--2-oxoglut 51.7 16 0.00042 16.1 3.9 68 57-124 20-91 (468)
51 COG1393 ArsC Arsenate reductas 50.9 17 0.00043 16.1 5.0 38 305-343 13-50 (117)
52 COG2875 CobM Precorrin-4 methy 48.8 18 0.00046 15.8 7.6 32 300-336 205-236 (254)
53 KOG3841 consensus 48.3 18 0.00047 15.8 2.9 33 88-126 75-111 (455)
54 TIGR02442 Cob-chelat-sub cobal 47.8 19 0.00048 15.7 5.4 57 184-241 520-596 (688)
55 PRK02406 DNA polymerase IV; Va 47.8 19 0.00048 15.7 6.6 28 95-124 89-116 (355)
56 PRK09016 quinolinate phosphori 47.2 19 0.00049 15.7 15.4 232 9-342 24-272 (296)
57 TIGR01617 arsC_related conserv 46.1 20 0.00051 15.6 3.7 47 304-357 10-56 (122)
58 COG2144 Selenophosphate synthe 46.0 20 0.00051 15.6 3.5 83 173-274 86-171 (324)
59 pfam03255 ACCA Acetyl co-enzym 45.4 20 0.00052 15.5 3.9 86 326-416 48-144 (145)
60 TIGR01075 uvrD DNA helicase II 45.3 21 0.00052 15.5 6.4 118 211-332 222-360 (741)
61 PRK05337 beta-hexosaminidase; 45.1 16 0.0004 16.3 2.1 36 296-336 219-256 (336)
62 TIGR01252 acetolac_decarb alph 44.4 11 0.00029 17.2 1.3 23 207-233 153-175 (234)
63 PRK03858 DNA polymerase IV; Va 44.0 21 0.00055 15.4 8.9 28 95-124 82-109 (398)
64 PRK09853 putative selenate red 43.3 12 0.0003 17.2 1.2 14 60-73 163-176 (1032)
65 TIGR01465 cobM_cbiF precorrin- 42.8 22 0.00057 15.2 7.6 111 272-387 49-198 (252)
66 pfam08519 RFC1 Replication fac 42.1 23 0.00058 15.2 3.4 12 307-318 106-117 (155)
67 COG4294 Uve UV damage repair e 42.0 23 0.00059 15.1 2.7 67 275-344 216-293 (347)
68 TIGR02439 catechol_proteo cate 41.5 17 0.00043 16.0 1.8 41 60-100 33-79 (288)
69 cd06815 PLPDE_III_AR_like_1 Ty 40.9 24 0.00061 15.0 3.3 19 370-388 237-255 (353)
70 KOG1495 consensus 40.7 24 0.00061 15.0 4.7 14 211-224 71-84 (332)
71 cd05292 LDH_2 A subgroup of L- 40.2 24 0.00062 15.0 5.1 17 294-310 198-214 (308)
72 TIGR00513 accA acetyl-CoA carb 39.8 24 0.00062 15.0 2.4 30 247-279 143-172 (329)
73 cd01466 vWA_C3HC4_type VWA C3H 39.6 25 0.00064 14.9 6.7 64 294-357 70-135 (155)
74 pfam11557 DUF3233 Protein of u 38.6 18 0.00045 15.9 1.6 56 346-401 148-209 (327)
75 cd05291 HicDH_like L-2-hydroxy 36.6 28 0.00071 14.6 4.7 10 218-227 153-162 (306)
76 PRK04053 rps13p 30S ribosomal 36.2 28 0.00072 14.6 3.4 31 310-344 39-69 (149)
77 cd02977 ArsC_family Arsenate R 36.0 28 0.00072 14.5 3.7 38 305-343 11-48 (105)
78 PRK01655 spxA transcriptional 35.7 22 0.00055 15.3 1.6 38 305-343 12-49 (131)
79 cd03034 ArsC_ArsC Arsenate Red 35.4 29 0.00074 14.5 4.8 38 305-343 11-48 (112)
80 PRK10122 UTP--glucose-1-phosph 35.3 25 0.00064 14.9 1.9 56 254-311 219-275 (297)
81 PRK05805 phosphate butyryltran 35.2 29 0.00074 14.4 5.1 34 206-239 94-130 (301)
82 PRK06223 malate dehydrogenase; 35.0 29 0.00075 14.4 4.1 14 217-230 153-166 (312)
83 PRK10853 hypothetical protein; 34.2 30 0.00077 14.3 4.5 37 305-342 12-48 (118)
84 TIGR01302 IMP_dehydrog inosine 34.0 22 0.00057 15.3 1.5 102 290-400 250-361 (476)
85 cd02072 Glm_B12_BD B12 binding 33.9 31 0.00078 14.3 6.3 75 278-357 39-119 (128)
86 pfam03599 CdhD CO dehydrogenas 33.5 31 0.00079 14.3 10.2 17 325-341 234-250 (384)
87 TIGR01907 cas_Cse3 CRISPR-asso 33.3 19 0.00048 15.7 1.0 27 9-37 14-41 (246)
88 cd03035 ArsC_Yffb Arsenate Red 33.0 31 0.0008 14.2 5.0 37 305-342 11-47 (105)
89 TIGR00575 dnlj DNA ligase, NAD 31.8 22 0.00056 15.3 1.2 144 185-345 497-666 (706)
90 pfam08850 DUF1820 Domain of un 31.6 26 0.00067 14.8 1.5 27 372-398 64-90 (99)
91 pfam03960 ArsC ArsC family. Th 31.6 33 0.00085 14.1 4.8 39 305-344 8-46 (111)
92 PRK13389 UTP--glucose-1-phosph 30.6 34 0.00088 13.9 2.2 54 255-310 223-277 (302)
93 cd03036 ArsC_like Arsenate Red 30.5 35 0.00088 13.9 4.6 38 305-343 11-48 (111)
94 cd05293 LDH_1 A subgroup of L- 30.2 35 0.00089 13.9 4.9 12 218-229 156-167 (312)
95 cd03586 Pol_IV_kappa Pol_IV_ka 30.2 35 0.00089 13.9 9.1 30 93-124 79-108 (337)
96 PRK06543 nicotinate-nucleotide 30.2 35 0.00089 13.9 16.5 179 109-342 74-257 (281)
97 PRK08591 acetyl-CoA carboxylas 29.8 12 0.0003 17.2 -0.5 55 293-357 362-417 (449)
98 cd02071 MM_CoA_mut_B12_BD meth 29.7 36 0.00091 13.8 8.5 75 278-357 39-113 (122)
99 pfam05985 EutC Ethanolamine am 29.7 36 0.00091 13.8 3.7 39 295-335 79-117 (237)
100 cd05294 LDH-like_MDH_nadp A la 29.5 36 0.00092 13.8 4.8 12 218-229 157-168 (309)
101 KOG3153 consensus 29.4 36 0.00092 13.8 5.1 10 351-360 180-189 (250)
102 TIGR02288 PaaN_2 phenylacetic 28.4 37 0.00095 13.7 5.0 110 225-341 133-279 (560)
103 PRK13945 formamidopyrimidine-D 28.3 38 0.00096 13.7 4.5 107 272-390 148-259 (283)
104 pfam02785 Biotin_carb_C Biotin 28.1 2.4 6.2E-05 21.9 -4.3 56 293-357 29-84 (107)
105 cd00300 LDH_like L-lactate deh 28.0 38 0.00097 13.7 4.8 12 218-229 151-162 (300)
106 TIGR01983 UbiG ubiquinone bios 27.1 36 0.00092 13.8 1.6 12 178-189 84-95 (275)
107 PTZ00134 40S ribosomal protein 27.0 39 0.001 13.5 3.6 26 254-279 8-39 (154)
108 cd05290 LDH_3 A subgroup of L- 26.8 40 0.001 13.5 5.1 10 218-227 155-164 (307)
109 PRK02261 methylaspartate mutas 26.7 40 0.001 13.5 7.6 75 278-357 43-123 (137)
110 PRK13370 mhpB 3-(2,3-dihydroxy 26.6 40 0.001 13.5 5.2 16 25-40 34-49 (313)
111 PRK06698 bifunctional 5'-methy 26.4 40 0.001 13.5 2.3 37 294-334 323-359 (459)
112 pfam09822 ABC_transp_aux ABC-t 26.3 41 0.001 13.5 2.4 48 250-300 206-262 (266)
113 PRK07765 para-aminobenzoate sy 26.3 41 0.001 13.5 7.4 13 224-236 121-135 (221)
114 PRK06136 uroporphyrin-III C-me 25.9 41 0.0011 13.4 1.9 14 214-227 118-131 (253)
115 pfam03445 DUF294 Putative nucl 25.7 42 0.0011 13.4 2.4 13 179-191 49-61 (168)
116 TIGR00655 PurU formyltetrahydr 25.3 25 0.00063 14.9 0.5 85 205-327 204-294 (294)
117 PRK05567 inositol-5'-monophosp 24.5 26 0.00067 14.8 0.5 94 5-118 38-131 (486)
118 PRK09762 galactosamine-6-phosp 24.4 44 0.0011 13.2 4.0 64 292-357 69-136 (236)
119 TIGR01267 Phe4hydrox_mono phen 24.1 44 0.0011 13.2 1.6 20 91-110 77-96 (251)
120 PTZ00314 inosine-5'-monophosph 23.9 35 0.0009 13.9 1.0 36 6-47 47-82 (499)
121 PRK00066 ldh L-lactate dehydro 23.7 45 0.0012 13.1 4.6 13 218-230 158-170 (315)
122 PRK08654 pyruvate carboxylase 23.6 20 0.0005 15.6 -0.3 56 293-357 363-418 (497)
123 PRK12655 fructose-6-phosphate 23.6 46 0.0012 13.1 3.7 71 267-341 103-178 (220)
124 KOG1710 consensus 23.3 46 0.0012 13.1 3.5 53 52-105 116-168 (396)
125 TIGR00875 talC transaldolase, 23.2 46 0.0012 13.1 1.9 42 295-339 134-177 (216)
126 COG2390 DeoR Transcriptional r 22.5 48 0.0012 13.0 6.3 75 325-411 224-299 (321)
127 PRK07649 para-aminobenzoate/an 22.4 48 0.0012 13.0 6.3 21 97-117 36-56 (195)
128 TIGR03372 putres_am_tran putre 22.1 40 0.001 13.5 1.0 46 60-105 7-52 (442)
129 PRK06552 keto-hydroxyglutarate 21.9 49 0.0012 12.9 5.9 31 323-357 156-186 (209)
130 PRK05586 biotin carboxylase; V 21.8 23 0.00058 15.2 -0.3 56 293-357 364-419 (447)
131 PRK05282 peptidase E; Validate 21.7 49 0.0013 12.9 6.0 18 358-378 133-150 (233)
132 cd00755 YgdL_like Family of ac 21.7 49 0.0013 12.9 5.2 30 299-331 154-183 (231)
133 COG0106 HisA Phosphoribosylfor 21.6 50 0.0013 12.9 7.2 48 212-278 84-134 (241)
134 PRK08463 acetyl-CoA carboxylas 21.5 23 0.00058 15.2 -0.3 55 293-357 364-419 (478)
135 pfam09024 consensus 21.2 40 0.001 13.5 0.9 76 327-411 30-107 (123)
136 PRK12833 acetyl-CoA carboxylas 21.2 24 0.0006 15.1 -0.3 56 293-357 367-422 (458)
137 PRK09140 2-dehydro-3-deoxy-6-p 21.1 51 0.0013 12.8 4.0 35 320-358 149-183 (206)
138 cd03032 ArsC_Spx Arsenate Redu 21.0 51 0.0013 12.8 5.2 38 305-343 12-49 (115)
139 COG0157 NadC Nicotinate-nucleo 20.9 51 0.0013 12.8 16.7 263 10-383 8-279 (280)
140 PRK06111 acetyl-CoA carboxylas 20.8 20 0.00051 15.6 -0.7 55 293-357 363-418 (449)
141 COG4943 Predicted signal trans 20.7 52 0.0013 12.7 2.9 31 292-322 355-387 (524)
142 PRK05294 carB carbamoyl phosph 20.7 52 0.0013 12.7 3.8 24 295-318 564-588 (1063)
143 KOG3303 consensus 20.7 52 0.0013 12.7 2.8 10 60-69 30-39 (192)
144 PRK04452 acetyl-CoA decarbonyl 20.1 53 0.0014 12.6 6.7 17 173-189 118-134 (322)
No 1
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=897.19 Aligned_cols=386 Identities=42% Similarity=0.714 Sum_probs=352.7
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 65671001244011789999999998489965999999658875544000023699999999716999899999983777
Q gi|254780455|r 6 STSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF 85 (418)
Q Consensus 6 ~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~ 85 (418)
..++|||+||||||+|||||+|+||+++|+.+|+|+||+|+++++.+.+ ++||+++|++|++||||++||+||++.
T Consensus 3 ~~~~~ii~SlLdTDlYklTM~qay~~~~~~~~a~f~f~~R~~~~~~~~~--~a~L~~~l~~l~~lrFt~eei~yL~~~-- 78 (400)
T PRK05321 3 WFADPIIRSLLDTDLYKLTMMQAVLHHYPDAQVEYEFICRNDEVDLAEY--IDEIREQLDHLCTLRLTDDELDYLRGL-- 78 (400)
T ss_pred CCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHC--
T ss_conf 6566322035020779999999999858997699999955887405499--999999999998679999999999838--
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEE--CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 555557898899997508998416873--399269998548778677888999999888887753134866799999999
Q gi|254780455|r 86 YGKKQLFEPKFLSWLSDFQLPEYDLSH--KKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQA 163 (418)
Q Consensus 86 ~~~~~~~~~~fl~~L~~~~f~~~~~~~--~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~ 163 (418)
++|+|+|++||++|||++..+.+ ++|+++|+|+|||.+|||||||||+||||++++.+.. ....+.+
T Consensus 79 ----~~f~~~Fl~yL~~frf~~~~v~v~~~~~~l~i~V~Gpl~e~qL~Et~lL~iinel~~~~~~~-------~~~~~~~ 147 (400)
T PRK05321 79 ----PFFKPDFLDWLRLFRLNPYYVTVRNDDGQLEIRIEGPWLHTILWEVPLLAIISELRFRYRSP-------GPFEAEA 147 (400)
T ss_pred ----CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_conf ----99998999999867998461789638982799999508999999999999998998865101-------5789999
Q ss_pred HHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf 99999877767426--9975998424434797889999999984212120124788999972898767520489876400
Q gi|254780455|r 164 KKKLWSKIIKLKNF--SGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA 241 (418)
Q Consensus 164 ~~~~~~k~~~~~~~--~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~ 241 (418)
..++++|++++... ++++++|||+|||||++||++++.+++++++++|+|||||+||++|||||+|||||||||+|++
T Consensus 148 ~~~la~K~~rl~~~a~~~~~~~EFGtRRr~s~~aq~~v~~a~~a~~~~~f~GTSNv~aa~~ygip~~GTmAHs~v~a~~a 227 (400)
T PRK05321 148 RARLWEKIERLKRRDLADFKIADFGTRRRFSFLWQEEVVEALKEGLGGQFVGTSNVHLAMKLGLTPIGTMAHEWFMAHQA 227 (400)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999998650158981543436556774047999999998715475556189999975999764458799999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 12203678654999999999963988659863468989999989-97310024341288887899999999999779881
Q gi|254780455|r 242 ITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNP 320 (418)
Q Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~-~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp 320 (418)
+.. +++++|+.||++|+++||++++|+|+||||+++|++++ ..+++.|.|||||||||++|++|+|+||+++|+||
T Consensus 228 l~~---~l~~se~~Af~~w~~~y~~~l~i~L~DTy~t~~fl~~~~~~~~~~~~GiR~DSGD~~~~~~k~~~~~~~~g~dp 304 (400)
T PRK05321 228 LGP---RLRDSQYAALEDWVREYRGDLGIALTDTIGMDAFLRDFDLYFAKLFDGLRHDSGDPFEWGEKAIAHYEKLGIDP 304 (400)
T ss_pred HCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 431---04445999999999976987531134123088999975387786338334488787899999999999769996
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
Q ss_conf 13089973898999999999972489737863346431465666666556777321689857576811167326887524
Q gi|254780455|r 321 QNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT 400 (418)
Q Consensus 321 ~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t 400 (418)
++|+|||||||||++|.+|+++++++++++|||||+||||++ ++|||||||||||+||+||+||||||||+|
T Consensus 305 ~~k~iv~Sd~Lde~~i~~L~~~~~~~i~~sfGIGT~Lt~D~~--------~~~~L~~VyKLve~~G~P~~KlSd~~~K~t 376 (400)
T PRK05321 305 RTKTLVFSDGLDLDKALELYRHFRGRIRLSFGIGTNLTNDLP--------GVKPLNIVIKLVECNGQPVAKLSDSPGKTM 376 (400)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCC--------CCCCCCEEEEEEEECCEEEEEECCCCCCCC
T ss_conf 664799869999999999999862787645754755105899--------998665788877668842345048977656
Q ss_pred CCHHHHHHHHH-HCCCCC
Q ss_conf 88899999999-809666
Q gi|254780455|r 401 GDISEIKRYLK-IFKIKK 417 (418)
Q Consensus 401 g~~~~~~~~~~-~~~~~~ 417 (418)
|+++.|.+|+| +|++..
T Consensus 377 ~~~~~~~~~~~~~f~~~~ 394 (400)
T PRK05321 377 CDDPEFLRYLRQVFGVPE 394 (400)
T ss_pred CCCHHHHHHHHHHCCCCC
T ss_conf 997899999999809993
No 2
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=100.00 E-value=0 Score=847.78 Aligned_cols=372 Identities=36% Similarity=0.601 Sum_probs=337.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 12440117899999999984899659999996588755440000236999999997169998999999837775555578
Q gi|254780455|r 13 SSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLF 92 (418)
Q Consensus 13 ~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~ 92 (418)
+||||||+|||||+|+||+++|+.+|+|+||+|+++ .+++.+++||+++|++|++||||++||+||++.++ +|
T Consensus 1 ~SlL~TDlYklTM~~ay~~~~~~~~a~f~ff~R~p~--~~~~~~~~~L~~~i~~l~~~rfteeei~yL~~~~~-----~~ 73 (377)
T cd01401 1 RSLLDTDLYKLTMQQAVLHHYPDVQVTYEFTNRSPE--DFLEEAAEALREQIDHLANLRFSEEELAYLRRSLP-----FL 73 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-----CC
T ss_conf 974465889999999999849997599999963898--75369999999999999858999999999984389-----99
Q ss_pred CHHHHHHHHHCCCCCCEEE----ECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9889999750899841687----339926999854877867788899999988888775313486679999999999999
Q gi|254780455|r 93 EPKFLSWLSDFQLPEYDLS----HKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW 168 (418)
Q Consensus 93 ~~~fl~~L~~~~f~~~~~~----~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (418)
+|+|++||++|||+++.+. +++|+|.|+|+|||.+|||||||||+||||+|++.+...++........+++..++.
T Consensus 74 ~~~fl~yL~~~rf~~~~v~~~~~~~~g~~~i~veGpl~e~~l~EtplL~iinel~~~~~~~~~~~~~~~~~~a~Ka~r~~ 153 (377)
T cd01401 74 KPDYLDYLELFRLNPEEVVVRLDTGKGQLDIRISGPWKDTILYEVPLLAIVSEVYFRFRDADWDYEEQLEKLEEKLERLL 153 (377)
T ss_pred CHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98999999857998110478514678717999986310022688999999989998753033246889999999999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHH
Q ss_conf 87776742699759984244347978899999999842121201247889999728987675204898764001220367
Q gi|254780455|r 169 SKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIE 248 (418)
Q Consensus 169 ~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~ 248 (418)
..+ .....++++++|||+|||||+++|++++.++|+++++||+|||||+||++|||||+|||||||||+|+++.+ .
T Consensus 154 ~~a-~~~~~~~~~~~EFG~RR~~~~~~~d~~~~~~raa~~~gf~GTSNv~a~~~ygip~~GT~AHs~v~~~~~l~~---~ 229 (377)
T cd01401 154 EEA-KRRDLNGFRFSDFGTRRRFSYEVQETVLKGLKQAAPGYLTGTSNVHFAMKYGLTPIGTVAHEWFMAHQALTG---D 229 (377)
T ss_pred HHH-CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC---C
T ss_conf 984-345678986887028888764689999999998861737201078999875999764457699999987522---1
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 8654999999999963988659863468989999989973100-243412888878999999999997798811308997
Q gi|254780455|r 249 TQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQ-WKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVF 327 (418)
Q Consensus 249 ~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~-~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~ 327 (418)
++++|..||++|+++||++++|+|+||||+++|++++....++ +.|||||||||++|++++|++||++|+||.+|+|||
T Consensus 230 ~~~se~~Af~~~~~~y~~~~~i~LvDTy~~~~fl~~~~~~~~~~~~GVRlDSGDl~~~~~~~r~~~d~~G~~~~~k~iv~ 309 (377)
T cd01401 230 LKDSQKAALERWVREYGGDLGIALTDTFGTDAFLRDFDLYFAKLFDGVRHDSGDPFEWGEKAIAHYEKLGIDPKTKTLVF 309 (377)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 00239999999999769974211131130899999877866652678853786789999999999997798957628999
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
Q ss_conf 3898999999999972489737863346431465666666556777321689857576811167326887524
Q gi|254780455|r 328 SDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT 400 (418)
Q Consensus 328 Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t 400 (418)
||||||++|++|+++++++++++|||||+||||+ ++++++|||||||||||+||+||||+||||||+|
T Consensus 310 S~~LDe~~i~~l~~~~~~~~~~~fGIGT~Lt~d~-----~~~~~~p~L~~VyKLve~~g~P~~KlSd~~~K~~ 377 (377)
T cd01401 310 SDGLDVEKALELYEYFKGRIKVSFGIGTNLTNDF-----GNKEKSTPLNIVIKLVECNGRPVAKISDSPGKNM 377 (377)
T ss_pred ECCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCC-----CCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCC
T ss_conf 1898999999999986489864898586762688-----7755688766689988678853447148986789
No 3
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase; InterPro: IPR006406 This family represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primarily proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is IPR006405 from INTERPRO. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase. ; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0019357 nicotinate nucleotide biosynthetic process.
Probab=100.00 E-value=0 Score=841.44 Aligned_cols=396 Identities=35% Similarity=0.564 Sum_probs=357.9
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 001244011789999999998489965999999658875--544000023699999999716999899999983777555
Q gi|254780455|r 11 IISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQL--HLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK 88 (418)
Q Consensus 11 iI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~--~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~ 88 (418)
||+||||||+|||||+|||+|+||++.|.|+|.+|+... ++.+++ ..|+++|++|++||||++|++||++.-
T Consensus 1 iI~SLLDTD~YK~tm~~Av~~~fPdv~v~y~f~~R~~~~~y~~~~~~--~~~r~e~~al~~LRft~dE~~yL~~el---- 74 (430)
T TIGR01514 1 IIRSLLDTDLYKITMLQAVFHLFPDVHVEYEFICRSEQLVYFLKELA--EALREEISALGALRFTDDEIEYLKQEL---- 74 (430)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHC----
T ss_conf 91221344387887898787508852799999866711232389999--999999999841387677899998625----
Q ss_pred CCCCCHHHHHHHH--HCCCCC-CEEEEC----CC-----CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 5578988999975--089984-168733----99-----26999854877867788899999988888775313486679
Q gi|254780455|r 89 KQLFEPKFLSWLS--DFQLPE-YDLSHK----KG-----QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSV 156 (418)
Q Consensus 89 ~~~~~~~fl~~L~--~~~f~~-~~~~~~----eg-----~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~ 156 (418)
|+++++|++||+ .|||.| +.+.+. +| .+.|+|+|||.+++||||||||||||+|++..+++......
T Consensus 75 -P~lk~~y~~~L~ss~F~f~PeEqV~~~s~~~~~~~~~~kL~Ir~~G~w~~~iL~E~p~LA~iSE~y~R~~~~~~d~~~~ 153 (430)
T TIGR01514 75 -PYLKSDYIDYLRSSEFRFDPEEQVEVSSIEIDKKPTKYKLDIRISGSWRDVILYEIPILAVISELYFRFREAEADVEQA 153 (430)
T ss_pred -CCCCHHHHHHHHCCCCEECCEEEEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHH
T ss_conf -7678678877640664316602688754760588851367788714167889999999999975653003899655468
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-------CEEHHHHHHHHHHCCCCCC
Q ss_conf 999999999999877767-42699759984244347978899999999842121-------2012478899997289876
Q gi|254780455|r 157 DLLYAQAKKKLWSKIIKL-KNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKD-------SFLGTSNALLAMNYKINAI 228 (418)
Q Consensus 157 ~~~~~~~~~~~~~k~~~~-~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~-------gf~GTSNv~aa~~~gi~~~ 228 (418)
...+.++..++.+.++.. ...+++.++|||||||+|.++|+.++..++.+..+ -+.|||||++|++||+.|+
T Consensus 154 l~~l~~Kl~~lka~~a~~~~~~~~~~~s~FGTRRRfSl~vq~~v~~~L~~~~~~~Pdrnks~~~GTSN~~lA~k~gl~Pi 233 (430)
T TIGR01514 154 LEVLESKLADLKALIAAETMSENRFRLSEFGTRRRFSLEVQDRVVKILKQAAPGSPDRNKSWLLGTSNVHLAKKLGLKPI 233 (430)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCCCCCC
T ss_conf 89999999999999963387889834741575201107899999999999618798645357860617899978188410
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHH-CCCCEEECCCCCHHHHH
Q ss_conf 752048987640012203678654999999999963988-6598634689899999899731-00243412888878999
Q gi|254780455|r 229 GTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSFGTDFFLEHAPSWM-TQWKGFRHDSASPIEGG 306 (418)
Q Consensus 229 GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~~~~l~~~~~~~-~~~~GVR~DSGD~~~~~ 306 (418)
|||||||+|+|+++.+ .+++++|+.||+.|+.+|++. +||+||||+|+|+||+++.... ..|+|||||||||..|.
T Consensus 234 GT~AHEW~q~hqai~~--~~~~~~q~~Ale~W~~~y~g~nLG~ALTDt~t~DaFLrdF~~~~A~~y~GlRHDSGDP~~wg 311 (430)
T TIGR01514 234 GTVAHEWFQAHQAISE--VDYKNAQKVALESWINEYDGDNLGIALTDTLTTDAFLRDFSKKFAKLYDGLRHDSGDPVEWG 311 (430)
T ss_pred CCCCHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHH
T ss_conf 6776046655342023--45888989999988865389843030341000014631168546766177620478851687
Q ss_pred HHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 999999997798811-308997389899999999997248-973786334643146566666655677732168985757
Q gi|254780455|r 307 EKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHFEN-RVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKA 384 (418)
Q Consensus 307 ~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~~~-~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~ 384 (418)
+|+++||.++||||+ +|.||||||||.+++++|+++|++ ++..+|||||+||||++.+..-.+....|||||+||+||
T Consensus 312 ~K~~~HY~~L~iDP~f~K~~~FSD~Ld~~~A~el~~~f~~nR~k~sFGIGTnLTND~~~W~~~~gv~~~PLNIViKL~Ec 391 (430)
T TIGR01514 312 EKAIAHYEKLGIDPKFSKLLIFSDSLDVEKAIELSKYFKGNRVKASFGIGTNLTNDLAKWKSEVGVKVEPLNIVIKLVEC 391 (430)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHCCHHHHHHCCCCCCCCCCEEEEEEEE
T ss_conf 79998688716786047898972699888999999987348768740762011203145531258840233036674332
Q ss_pred CCCC------EEEEECCCCCCCCCHHHHHHHHH-HCCC
Q ss_conf 6811------16732688752488899999999-8096
Q gi|254780455|r 385 NDKH------AVKLSDDPAKTTGDISEIKRYLK-IFKI 415 (418)
Q Consensus 385 ~g~P------~~KlSd~~~K~tg~~~~~~~~~~-~~~~ 415 (418)
||+| |+||||+|||+||+++.+.++++ +|++
T Consensus 392 nG~~kddWhyv~KlSD~pGK~~~~~~~~l~~l~~~f~~ 429 (430)
T TIGR01514 392 NGKPKDDWHYVAKLSDSPGKTMGEDETFLRALRKLFDV 429 (430)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 68857672789997558888658858999999850789
No 4
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase; InterPro: IPR006405 A deep split separates two related families of proteins, one of which includes experimentally characterised examples of nicotinate phosphoribosyltransferase, the first enzyme of NAD salvage biosynthesis. This entry represents the other family. Members have a different (longer) spacing of several key motifs and have an additional C-terminal domain of up to 100 residues. One argument suggesting that this family represents the same enzyme is that no species has a member of both families. Another is that the gene encoding this protein is located near other NAD salvage biosynthesis genes in Nostoc and in at least four different Gram-positive bacteria. NAD and NADP are ubiquitous in life. Most members of this family are from Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cut-offs. .
Probab=100.00 E-value=0 Score=795.50 Aligned_cols=353 Identities=24% Similarity=0.291 Sum_probs=306.0
Q ss_pred HCCHHHHHHHHHHHHHHCCCCE-EEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 4011789999999998489965-999999658875544000023699999999716999899999983777555557898
Q gi|254780455|r 16 LDTDFYKILMLQLIWKFYPDIK-VTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP 94 (418)
Q Consensus 16 LdTD~YkltM~~a~~~~~~~~~-v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~ 94 (418)
|.||||||||+|+||.++++.. ++||+|+|+.| +.++|+|+|||+.+|++|++|||+++||+||+++.+ +.|++
T Consensus 2 LlTDlYelTM~q~Yf~~g~~~~~A~Fe~FfRk~P-~~~~Y~v~AGL~~~l~~L~~frF~~~D~~YL~~llP----g~f~~ 76 (523)
T TIGR01513 2 LLTDLYELTMAQGYFKEGIANKKAVFEVFFRKLP-FKRGYAVFAGLEDLLEFLENFRFDDEDIEYLASLLP----GIFDD 76 (523)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECC-CCCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHCC----CCCCH
T ss_conf 7540789999999986188888438888644368-999607863537899998512888899999998488----99867
Q ss_pred HHHHHHHHCCCCCCEEEECCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999975089984168733992------6999854877867788899999988888775313486679999999999999
Q gi|254780455|r 95 KFLSWLSDFQLPEYDLSHKKGQ------YVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW 168 (418)
Q Consensus 95 ~fl~~L~~~~f~~~~~~~~eg~------~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (418)
+||+||++|||++.+.+.+||+ |+|+|+||++||||+||+|||+||. +.++|++..|+.
T Consensus 77 ~FL~~Lr~FrF~g~v~A~~EG~~~FP~eP~l~v~gpl~eaqLlET~vLn~~nf---------------qtLiAtKAAR~~ 141 (523)
T TIGR01513 77 EFLDYLREFRFSGDVRALPEGSVVFPNEPLLQVEGPLIEAQLLETLVLNIINF---------------QTLIATKAARIV 141 (523)
T ss_pred HHHHHHCCCCCEEEEEEECCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
T ss_conf 89998507521068988416635408888899841156788887999988878---------------899999999999
Q ss_pred HHHHHHHCCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHC-CCCC
Q ss_conf 8777674269975--998424434797889999999984212120124788999972898767520489876400-1220
Q gi|254780455|r 169 SKIIKLKNFSGLK--IVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA-ITRT 245 (418)
Q Consensus 169 ~k~~~~~~~~~~~--l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~-~~~~ 245 (418)
. ++.+.+ |+|||+||+|+. |++++|+||||+|||+|||||+|||+||||+.|||||||||+|++ ..+.
T Consensus 142 ~------aa~~~~G~l~EfG~RRAqG~---daAl~AaRAAyigGa~gTSN~~AGr~ygIPv~GTmAHa~V~~F~~~~~P~ 212 (523)
T TIGR01513 142 L------AAGGKPGRLLEFGLRRAQGM---DAALKAARAAYIGGADGTSNVLAGRLYGIPVSGTMAHAFVQSFDQSEGPT 212 (523)
T ss_pred H------HHCCCCCEEEEECCCCCCCH---HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHEEECCCCCCC
T ss_conf 9------86489962874056400031---37899988888861104378888877388974043312331106887788
Q ss_pred H---------------HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHH----HHHHHHCCC---CEEECCCCCH
Q ss_conf 3---------------6786549999999999639886598634689899-999----899731002---4341288887
Q gi|254780455|r 246 D---------------IETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDF-FLE----HAPSWMTQW---KGFRHDSASP 302 (418)
Q Consensus 246 ~---------------~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~-~l~----~~~~~~~~~---~GVR~DSGD~ 302 (418)
+ -+.+-.|.+||++|++.||.+. ++|+|||||.. +++ .+.++..+. .||||||||+
T Consensus 213 ~~mWleqvCahlGlGvqePhP~E~~AFrAYA~~YP~~~-~lL~DTYDtL~SG~~nai~va~eLg~~~~~~~gVRiDSGDL 291 (523)
T TIGR01513 213 ELMWLEQVCAHLGLGVQEPHPSELEAFRAYAKLYPKNT-VLLVDTYDTLRSGLPNAIAVAKELGEQGKEVVGVRIDSGDL 291 (523)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHH
T ss_conf 51479889987357656889667899999999758971-67511166776789999999999752055058899611779
Q ss_pred HHHHHHHHHHHHHCC-------CCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC--
Q ss_conf 899999999999779-------88113089973898999999999972489737863346431465666666556777--
Q gi|254780455|r 303 IEGGEKIIAWWKKMN-------CNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTE-- 373 (418)
Q Consensus 303 ~~~~~k~~~~l~~~G-------idp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~-- 373 (418)
.++|+++|+.||++| + ...+||.||+|||..|..|.. .++.||+|||||+| +|+.++|
T Consensus 292 ~~LSk~~R~~LD~AGaqfqvPWL--~~vkI~VSn~LDE~~I~~L~~--~gapID~~GVGT~L---------vTa~~~PGG 358 (523)
T TIGR01513 292 AYLSKKVRKELDEAGAQFQVPWL--EEVKIVVSNDLDENSIAALKA--EGAPIDVYGVGTSL---------VTASDAPGG 358 (523)
T ss_pred HHHHHHHHHHHHHHCHHCCCCCH--HCCEEEEECCCCHHHHHHHHH--CCCCEEEEEECCEE---------EECCCCCCC
T ss_conf 99999999999861111158600--375489967404789999996--58945388846788---------984788885
Q ss_pred CCCEEEEEEEECC-----------------------CCEEEEECCCCCCC--CCHHHHHHHHH
Q ss_conf 3216898575768-----------------------11167326887524--88899999999
Q gi|254780455|r 374 KLQIVCKVTKAND-----------------------KHAVKLSDDPAKTT--GDISEIKRYLK 411 (418)
Q Consensus 374 ~l~~VyKlve~~g-----------------------~P~~KlSd~~~K~t--g~~~~~~~~~~ 411 (418)
+++||||||+++| +|+||+|||++|.| |.|+.+|.|.|
T Consensus 359 ~l~~VYKlva~~gtqPahtqhGhaaqrlPhW~~G~~~P~~K~S~n~~K~t~Pg~K~v~R~~~~ 421 (523)
T TIGR01513 359 ALSGVYKLVAYEGTQPAHTQHGHAAQRLPHWEDGKIRPKMKLSENPEKSTLPGKKQVFRLYDK 421 (523)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCEEECEEEEECCCCCCCCCCHHHHHEHHHH
T ss_conf 002137888863787641124403333883115746210442068766788851432110130
No 5
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=0 Score=715.25 Aligned_cols=342 Identities=23% Similarity=0.276 Sum_probs=299.2
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 100124401178999999999848-9965999999658875544000023699999999716999899999983777555
Q gi|254780455|r 10 PIISSLLDTDFYKILMLQLIWKFY-PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK 88 (418)
Q Consensus 10 piI~SlLdTD~YkltM~~a~~~~~-~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~ 88 (418)
+--.+|| ||+|||||+|+||+++ ++++++|++|+|++| +.++|+|++||+++|+++++|||+++||+||++..
T Consensus 6 ~~~~aLl-TDlYqlTM~~~y~~~g~~~~~avFelFfRk~P-~~~gy~V~AGLe~~l~~l~~~rF~~~di~yL~~~~---- 79 (466)
T PRK09243 6 DDSLALL-TDLYELTMAQAYFKDGIHNRRAVFEVFFRKLP-FGRGYAVFAGLERLLEYLENLRFTEEDIEYLRSLG---- 79 (466)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC-CCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHCC----
T ss_conf 6644888-88899999999997699888279999874699-99945999769999999997799989999999759----
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEECCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5578988999975089984168733992------6999854877867788899999988888775313486679999999
Q gi|254780455|r 89 KQLFEPKFLSWLSDFQLPEYDLSHKKGQ------YVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQ 162 (418)
Q Consensus 89 ~~~~~~~fl~~L~~~~f~~~~~~~~eg~------~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~ 162 (418)
.|+++|++||++|+|++.+++++||+ |+++|+||+.+|||+||+||++||..+.++|
T Consensus 80 --~f~~~Fl~yL~~~~Fsg~v~A~~EG~~~Fp~ePll~v~gp~~~~qllET~lL~~ln~~sliAT--------------- 142 (466)
T PRK09243 80 --GFSEDFLDYLRNFRFTGDIRAMPEGELVFPNEPLLRVEAPLAEAQLLETLLLNIINFQTLIAT--------------- 142 (466)
T ss_pred --CCCHHHHHHHHHCCCCEEEEEECCCCEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf --989899999974885248998358666618997799996688999999999999888889999---------------
Q ss_pred HHHHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf 9999998777674-269975998424434797889999999984212120124788999972898767520489876400
Q gi|254780455|r 163 AKKKLWSKIIKLK-NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA 241 (418)
Q Consensus 163 ~~~~~~~k~~~~~-~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~ 241 (418)
|++|++ ++.+++++|||+||+|+. ++++.++||+|+|||+|||||+||++||||+.|||||||||+|+
T Consensus 143 -------kAaR~~~aA~~~~v~efG~RRa~g~---~a~~~aaRaayigG~~~TSnv~A~~~~gip~~GTmaHs~v~~~~- 211 (466)
T PRK09243 143 -------KAARIVSAAGGRPLLEFGSRRAQGP---DAAVWAARAAYIGGFDATSNVLAGKRYGIPVSGTMAHSFVQAFD- 211 (466)
T ss_pred -------HHHHHHHHHCCCEEEECCCCCCCCC---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHEECC-
T ss_conf -------9999999848984684057666860---58999999999807555568899997599974334636440067-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH-----HHHHHHHHHHHC--CCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 1220367865499999999996398865986346898-----999998997310--024341288887899999999999
Q gi|254780455|r 242 ITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT-----DFFLEHAPSWMT--QWKGFRHDSASPIEGGEKIIAWWK 314 (418)
Q Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~-----~~~l~~~~~~~~--~~~GVR~DSGD~~~~~~k~~~~l~ 314 (418)
+|.+||++|+++||++. ++|+||||+ +++++.+.++.. +..||||||||++++++++|++||
T Consensus 212 ----------~E~~AF~a~a~~~p~~~-~lLvDTYdtl~sGv~~ai~va~el~~g~~l~gVRlDSGDLa~Ls~~vR~~LD 280 (466)
T PRK09243 212 ----------DEYEAFRAYAEAYPKNC-VLLVDTYDTLKSGVPNAIKVAKELGDGIELGGVRIDSGDLAYLSKKVRKMLD 280 (466)
T ss_pred ----------CHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf ----------69999999999779872-7999754226665899999999864267541057055239999999999997
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC----CEE
Q ss_conf 7798811308997389899999999997248973786334643146566666655677732168985757681----116
Q gi|254780455|r 315 KMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDK----HAV 390 (418)
Q Consensus 315 ~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~----P~~ 390 (418)
++|+. ..+|++||||||+.|.+|.++ ++.+|+|||||+| +||.++|+||+||||||++|+ |+|
T Consensus 281 ~aG~~--~~kI~aSndLDE~~I~~L~~~--ga~ID~fGVGT~L---------vT~~~~Palg~VYKLv~~~~~g~~~p~i 347 (466)
T PRK09243 281 EAGFT--DTKIVASNDLDEYTIASLKAQ--GAPIDGFGVGTKL---------VTASDAPALGGVYKLVAIEGEGGWIPKI 347 (466)
T ss_pred HCCCC--CCEEEEECCCCHHHHHHHHHC--CCCCCEEECCCEE---------EECCCCCCCCEEEEEEEECCCCCCCCCE
T ss_conf 67888--848999489899999999976--9972232045436---------7558988776168899986888766513
Q ss_pred EEECCCCCCC--CCHHHHHHH
Q ss_conf 7326887524--888999999
Q gi|254780455|r 391 KLSDDPAKTT--GDISEIKRY 409 (418)
Q Consensus 391 KlSd~~~K~t--g~~~~~~~~ 409 (418)
|+|++++|.| |.|+.||.|
T Consensus 348 K~S~~~~K~t~PG~Kqv~R~~ 368 (466)
T PRK09243 348 KISKNSEKVTTPGRKQVYRIY 368 (466)
T ss_pred ECCCCCCCCCCCCCCEEEEEE
T ss_conf 403777763788661589999
No 6
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=713.63 Aligned_cols=334 Identities=25% Similarity=0.280 Sum_probs=295.6
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 24401178999999999848996599999965887554400002369999999971699989999998377755555789
Q gi|254780455|r 14 SLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFE 93 (418)
Q Consensus 14 SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~ 93 (418)
+|| ||+|||||+|+||+++++.+++|++|+|++| +.++|+|++||+++|+++++|||+++||+||++.. .|+
T Consensus 5 aLl-TDlYqlTM~~~y~~~g~~~~avFelF~Rk~P-~~~~y~v~AGle~~l~~l~~~~F~~~di~yL~~~~------~f~ 76 (443)
T PRK12484 5 ALL-TDLYELTMANSYLAERMSGPATFSLFYRKLP-DGRGFLVAAGLADVVEFLEAFRFDEQDLRYLRGLN------QFS 76 (443)
T ss_pred HHH-HHHHHHHHHHHHHHCCCCCCEEEEEEEECCC-CCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHCC------CCC
T ss_conf 587-8889999999999729998189999985699-99822799258999999987799999999998569------998
Q ss_pred HHHHHHHHHCCCCCCEEEECCC------CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 8899997508998416873399------2699985487786778889999998888877531348667999999999999
Q gi|254780455|r 94 PKFLSWLSDFQLPEYDLSHKKG------QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKL 167 (418)
Q Consensus 94 ~~fl~~L~~~~f~~~~~~~~eg------~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (418)
++|++||++|||++++++++|| +|+|+|+|||.+|||+||+||++||+.+..+|
T Consensus 77 ~~Fl~~L~~~~f~g~v~A~~EG~v~fp~ePll~V~gP~~~~qllET~lL~~ln~~sliAT-------------------- 136 (443)
T PRK12484 77 EEFLAWLAGFRFTGDVWAVPEGTVVFPNEPLLEVTAPLIEAQLVETFLLNQINHQSLIAS-------------------- 136 (443)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_conf 799999985847742888317864279983799997589999999999999999989999--------------------
Q ss_pred HHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCH
Q ss_conf 98777674-26997599842443479788999999998421212012478899997289876752048987640012203
Q gi|254780455|r 168 WSKIIKLK-NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTD 246 (418)
Q Consensus 168 ~~k~~~~~-~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~ 246 (418)
|++|++ ++++++++|||+||+|++ ++++.++|++++|||+|||||+||++|||||+|||||||||+|++
T Consensus 137 --kAaR~~~aA~~~~vleFG~RRa~g~---da~~~~aRaayigG~~gTSNvlag~~~gip~~GTmaHs~v~af~~----- 206 (443)
T PRK12484 137 --KAARVVLAARGRPVVDFGARRAHGT---DAACYVARASYIAGAAGTSNVLAARQYGIPTSGTMAHSYVEAFPD----- 206 (443)
T ss_pred --HHHHHHHHHCCCCEEECCCCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHEEECCCC-----
T ss_conf --9999998608990563355355761---578999999986375430787889866999654430030011798-----
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH----HHHHHHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 678654999999999963988659863468989----999989973100--24341288887899999999999779881
Q gi|254780455|r 247 IETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTD----FFLEHAPSWMTQ--WKGFRHDSASPIEGGEKIIAWWKKMNCNP 320 (418)
Q Consensus 247 ~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~----~~l~~~~~~~~~--~~GVR~DSGD~~~~~~k~~~~l~~~Gidp 320 (418)
|..||++|+++||++ +|+|+||||+. ++++.+.++... ..||||||||++++++++|++||++|++
T Consensus 207 ------E~~Af~a~a~~~p~~-~i~LvDTYdtl~Gv~~ai~va~~l~~~~~~~GVRlDSGDl~~Ls~~~R~~LD~~G~~- 278 (443)
T PRK12484 207 ------EVAAFRAFARLYPDA-TMLLVDTYDTLRGVRNAIEVAKELGNRGDVRGVRLDSGDLAELSKATRAILDTAGLE- 278 (443)
T ss_pred ------HHHHHHHHHHHCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC-
T ss_conf ------999999999977998-179997474377799999999984212577868868853999999999999867998-
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
Q ss_conf 13089973898999999999972489737863346431465666666556777321689857576811167326887524
Q gi|254780455|r 321 QNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT 400 (418)
Q Consensus 321 ~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t 400 (418)
. .+|++||||||++|.+|.++ ++++|+|||||+| +|+.++|+||+||||||++|+|++|+| ++|.|
T Consensus 279 ~-~kI~~S~~LdE~~I~~L~~~--ga~iD~fGVGT~L---------vT~~~~P~lg~VYKLV~~~~~p~~K~S--~~K~t 344 (443)
T PRK12484 279 Q-VKIVASGGLDENRIAALLAA--GAPIDGFGVGTRL---------GVSADAPVLDSAYKLVAYDGRGVTKLS--SGKVT 344 (443)
T ss_pred C-CEEEEECCCCHHHHHHHHHC--CCCEEEECCCCCE---------ECCCCCCCCCEEEEEEEECCCCEEECC--CCCCC
T ss_conf 8-67999699999999999987--9963587167634---------038999867648999998687537627--87625
Q ss_pred --CCHHHHH
Q ss_conf --8889999
Q gi|254780455|r 401 --GDISEIK 407 (418)
Q Consensus 401 --g~~~~~~ 407 (418)
|.|+.||
T Consensus 345 ~PG~K~vyR 353 (443)
T PRK12484 345 YPGRKQVFR 353 (443)
T ss_pred CCCCEEEEE
T ss_conf 787648999
No 7
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=100.00 E-value=0 Score=665.49 Aligned_cols=310 Identities=24% Similarity=0.281 Sum_probs=273.2
Q ss_pred HCCHHHHHHHHHHHHHH-CCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 40117899999999984-89965999999658875544000023699999999716999899999983777555557898
Q gi|254780455|r 16 LDTDFYKILMLQLIWKF-YPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP 94 (418)
Q Consensus 16 LdTD~YkltM~~a~~~~-~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~ 94 (418)
|.||+|||||+|+|||+ +|+++|+||+|+|++| ..++|.+++||+++|++|+++|||++|++||++.++ |++
T Consensus 2 l~TD~YkltM~qa~~~~~~~~~~~~~e~f~R~~p-~~~~~~v~~gl~~~i~~l~~lrft~eEl~yL~~~~~------~~~ 74 (327)
T cd01570 2 LLTDLYQLTMAQAYWKEGKHNKPAVFELFFRKLP-FGGGYAVFAGLEELLEYLENFRFTEEDIDYLRSLGI------FDE 74 (327)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC-CCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC------CCH
T ss_conf 5335779999999997089997299999975798-777312356199999999867999999999986599------998
Q ss_pred HHHHHHHHCCCCCCEEEECCCCE------EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999750899841687339926------999854877867788899999988888775313486679999999999999
Q gi|254780455|r 95 KFLSWLSDFQLPEYDLSHKKGQY------VLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW 168 (418)
Q Consensus 95 ~fl~~L~~~~f~~~~~~~~eg~~------~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (418)
+|++||+.|||++.+.+++||++ +|+|+|||.++++||||||+|||+.+..++ +
T Consensus 75 ~fl~~L~~~rf~~~v~a~~eG~~~~~~ep~l~I~Gp~~~~~l~Et~lL~iis~~~~iat---------------k----- 134 (327)
T cd01570 75 EFLDYLRGFRFTGTIYAIPEGEVVFPNEPLLTVEGPLIEAQLLETLLLNLINFQTLIAT---------------K----- 134 (327)
T ss_pred HHHHHHHHCCCCCEEEECCCCEEEECCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH---------------H-----
T ss_conf 99999982899971895578418558915899997189999999999988538999998---------------9-----
Q ss_pred HHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH
Q ss_conf 877767-4269975998424434797889999999984212120124788999972898767520489876400122036
Q gi|254780455|r 169 SKIIKL-KNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDI 247 (418)
Q Consensus 169 ~k~~~~-~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~ 247 (418)
+.++ .++++++++|||+|||||++ +++.+.|+++++||+|||||++|++||+||+|||||||||+|++
T Consensus 135 --a~r~~~aa~~~~~~eFGtRR~~~~~---~~~~~~ra~~~ggf~GTSNv~~a~~~gl~p~GT~aHe~i~~~~~------ 203 (327)
T cd01570 135 --AARVRLAAGGRPLLEFGLRRAQGPD---AALSAARAAYIGGFDGTSNVLAGKLYGIPVSGTMAHSFVQAFDD------ 203 (327)
T ss_pred --HHHHHHHCCCCCEEECCCCCCCCHH---HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHEEECCC------
T ss_conf --9999986399946722787764268---99999998532786232789999982998334444210245255------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCH-----HHHHHHHHHHHC---CCCEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7865499999999996398865986346898-----999998997310---02434128888789999999999977988
Q gi|254780455|r 248 ETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT-----DFFLEHAPSWMT---QWKGFRHDSASPIEGGEKIIAWWKKMNCN 319 (418)
Q Consensus 248 ~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~-----~~~l~~~~~~~~---~~~GVR~DSGD~~~~~~k~~~~l~~~Gid 319 (418)
|..||++|+++||+++ |+|+|||++ ++|++++....+ ++.|||+|||||.+|++++|++||++|++
T Consensus 204 -----e~~A~~~~~~~~~~~~-iaL~DTydt~~~g~~~fl~~~~~~~~~~~~~~GVR~DSGD~~~~~~~~r~~ld~~G~~ 277 (327)
T cd01570 204 -----ELAAFRAFAEAYPDNF-TLLVDTYDTLRSGLPNAIAVAKELGALGYRLVGVRIDSGDLAYLSKEARKMLDEAGLT 277 (327)
T ss_pred -----HHHHHHHHHHHCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf -----9999999999779984-8998457751553999999999878517888679847988799999999999877999
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 113089973898999999999972489737863346431465666666556777321689857
Q gi|254780455|r 320 PQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVT 382 (418)
Q Consensus 320 p~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlv 382 (418)
+. +||+||||||++|.++.+ .++.+++|||||+| +||.++||||||||||
T Consensus 278 ~~--kIv~SdgLd~~~i~~l~~--~g~~id~FGIGT~L---------~t~~~~p~l~iV~KLV 327 (327)
T cd01570 278 KV--KIVASNDLDEYTIAALNA--QGAPIDAFGVGTRL---------VTSQSQPALGGVYKLV 327 (327)
T ss_pred CC--EEEEECCCCHHHHHHHHH--CCCCCEEEECCCCC---------CCCCCCCCCCEEEECC
T ss_conf 97--899979999999999997--79973499678761---------2399998077889539
No 8
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=657.47 Aligned_cols=356 Identities=33% Similarity=0.463 Sum_probs=309.3
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 56710012440117899999999984899-65999999658875544000023699999999716999899999983777
Q gi|254780455|r 7 TSDPIISSLLDTDFYKILMLQLIWKFYPD-IKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF 85 (418)
Q Consensus 7 ~~~piI~SlLdTD~YkltM~~a~~~~~~~-~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~ 85 (418)
..+|+|+|+||||+||+||+|+||+++|+ ..|+|++++|+.| ++++|++++|++++|++|++|||+++|+.||++.
T Consensus 6 ~~~~~i~~~L~TD~Ykltm~q~~~~~~~~~~~v~~e~~~R~~p-~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~~-- 82 (405)
T COG1488 6 KSEPDIKSLLDTDLYKLTMLQAYLHDGPNNVTVVFEFFFRKLP-FLGGYAVFAGLEEVLELLENLRFSEEEIAYLRSL-- 82 (405)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC--
T ss_conf 0067776437768999999999885489871799999852786-5306899988999999975157888999987506--
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCC------CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 555557898899997508998416873399------26999854877867788899999988888775313486679999
Q gi|254780455|r 86 YGKKQLFEPKFLSWLSDFQLPEYDLSHKKG------QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLL 159 (418)
Q Consensus 86 ~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg------~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~ 159 (418)
++++++|++||+ +|+..+.+++|| +|+|+|+|||.+++|||||+|+|||+...
T Consensus 83 ----~~~~~~fl~~L~--~f~~~i~a~~eg~~~~~~ep~l~i~G~~~e~~l~Et~lL~ii~~~~~--------------- 141 (405)
T COG1488 83 ----PFFKPDFLNYLR--RFPLDIYAVPEGTVVFPNEPVLRIEGPYLETILLETPLLGIINEASL--------------- 141 (405)
T ss_pred ----CCCCHHHHHHHH--HCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf ----655268999985--18786278742512048982599985588999999999999999999---------------
Q ss_pred HHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 999999999877767426--997599842443479788999999998421212012478899997289876752048987
Q gi|254780455|r 160 YAQAKKKLWSKIIKLKNF--SGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPM 237 (418)
Q Consensus 160 ~~~~~~~~~~k~~~~~~~--~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~ 237 (418)
+++|++++..+ .+++++|||+|||||+++| ..+.++++++||.|||||++|++||++|+|||||||+|
T Consensus 142 -------iatka~r~~~~a~~~~~v~dFGtRr~~~~~~~---~~~~raa~igg~~GtSnv~~a~~~g~~~~GTmaHa~i~ 211 (405)
T COG1488 142 -------IATKAARVKDAAGKGFPVLDFGTRRRHSADAQ---PWIGRAAYIGGFDGTSNVLAAKKYGIKPIGTMAHALIQ 211 (405)
T ss_pred -------HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHH
T ss_conf -------99999999975358984885467656640567---99999998734646106999997299976864539999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHH----CCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 640012203678654999999999963988-6598634689899999899731----00243412888878999999999
Q gi|254780455|r 238 VAAAITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSFGTDFFLEHAPSWM----TQWKGFRHDSASPIEGGEKIIAW 312 (418)
Q Consensus 238 a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~~~~l~~~~~~~----~~~~GVR~DSGD~~~~~~k~~~~ 312 (418)
+|+++.+ +|..||++|+++||++ ++|+|+|||+.+++++.+.... ..+.|||+|||||.++++++|++
T Consensus 212 ~~~~~~~-------~e~~A~~~~~e~~~~~~~~i~ltD~~~~~~~~~~~~~~~~~~~~~~~GVR~DSGd~~~~~~kvr~~ 284 (405)
T COG1488 212 AFGQLFG-------DEVAAFRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRLDSGDPRELSEKVRAH 284 (405)
T ss_pred HHHCCCC-------HHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 8620233-------099999999997689972899985065277887678888614466338977999979999999999
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEE
Q ss_conf 99779881130899738989999999999724897378633464314656666665567773216898575768111673
Q gi|254780455|r 313 WKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKL 392 (418)
Q Consensus 313 l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~Kl 392 (418)
||+.|++| |+||+|||++.|+++.+++.+..+ +++|||||+|||+. +.||+++|||||||+|+|++|+
T Consensus 285 ld~~G~~~--~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~---------~~~~~~~v~Klvev~g~p~~Ki 352 (405)
T COG1488 285 LDKLGYDP--VKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAK---------PRPPLDIVYKLVEVNGKPVAKI 352 (405)
T ss_pred HHHCCCCC--EEEEEECCCCHHHHHHHHHHHCCC-CCEECCCHHHCCCC---------CCCCCEEEEEEEEECCCCCEEE
T ss_conf 99759985--089983785358999999981787-20765655431489---------9886306999999868011352
Q ss_pred ECCCCCCCCCHHH-HHHHHHHCCC
Q ss_conf 2688752488899-9999998096
Q gi|254780455|r 393 SDDPAKTTGDISE-IKRYLKIFKI 415 (418)
Q Consensus 393 Sd~~~K~tg~~~~-~~~~~~~~~~ 415 (418)
|++|+|.+|.... .++..++++.
T Consensus 353 s~~Pgkk~~~r~~~~~~~~~~~~~ 376 (405)
T COG1488 353 SKNPGKKQVYRSAFVRELLVVFGD 376 (405)
T ss_pred CCCCCCCEEECCHHHHHHHEECCC
T ss_conf 578764403440344544210254
No 9
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=100.00 E-value=0 Score=608.83 Aligned_cols=331 Identities=30% Similarity=0.366 Sum_probs=289.2
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 44011789999999998489965999999658875544000023699999999716999899999983777555557898
Q gi|254780455|r 15 LLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP 94 (418)
Q Consensus 15 lLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~ 94 (418)
+||||+|||||+|+||+++|+++|+|+|++|+++ ..+++.+++||+++|++|++++|+++|++||++.+ .+.+
T Consensus 1 lL~TD~Ykltm~~~~~~~~~~~~v~f~~~~R~~~-~~~~~~v~~gl~~~l~~l~~l~~~~~e~~~l~~~~------~~~~ 73 (343)
T cd01567 1 LLDTDLYKLTMMQAYLYPYPNTRVVFEFTFRSNP-FGGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLL------IFGE 73 (343)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC------CCCH
T ss_conf 9623589999999998559991699999977899-87505699999999999863899999999998459------9986
Q ss_pred HHHHHHHHCCCCCCEEEECCC------CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899997508998416873399------26999854877867788899999988888775313486679999999999999
Q gi|254780455|r 95 KFLSWLSDFQLPEYDLSHKKG------QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW 168 (418)
Q Consensus 95 ~fl~~L~~~~f~~~~~~~~eg------~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (418)
.|+++++.++++.++.+++|| +|+|+|+|||.++++||||||+|+|+.++.++.+.+.... +.....
T Consensus 74 ~~~~~~~~~~~~~~i~a~~eG~~~~~~~p~i~i~g~~~~~~l~Et~lL~ii~~~t~~at~~~~~~~~-------a~~~~~ 146 (343)
T cd01567 74 FFLYLLFLGKLPLEIYALPEGTVVFPKEPLLTIEGPWPEAGLLETPLLAIWNEATSIATKAARKKLA-------AGGLLE 146 (343)
T ss_pred HHHHHHHCCCCCCEEEEECCCCEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_conf 8999885099872598715864315793799999468998899999999999999999889999999-------999875
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHH
Q ss_conf 87776742699759984244347978899999999842121201247889999728987675204898764001220367
Q gi|254780455|r 169 SKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIE 248 (418)
Q Consensus 169 ~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~ 248 (418)
++ ......+++++|||+|||||++ .++.++++++++||.||||+++|++||++|+|||||||||+|+++
T Consensus 147 ~~--~~~~~~~~~~~dFG~Rr~~s~~---~~~~~~~a~~~~~~~gtSn~~~a~~~~l~~iGT~aHs~i~~~~~~------ 215 (343)
T cd01567 147 TK--DNLEELGFKLHDFGTRRRHSPE---AALSGGRAALIGGFGGTSNVAAAKKLGIPPIGTMAHSWIQAFGAL------ 215 (343)
T ss_pred HH--CCCCCCCCEEEEECCCCCCCHH---HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCC------
T ss_conf 10--1013589768860798888778---999999997559975605999986518975353403899975763------
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH-HHHH---HHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8654999999999963988659863468989999-9899---731--002434128888789999999999977988113
Q gi|254780455|r 249 TQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFL-EHAP---SWM--TQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQN 322 (418)
Q Consensus 249 ~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l-~~~~---~~~--~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~ 322 (418)
++++..||+.|...||++++|+|+||||+++++ +.+. +.. .++.|||+|||||.++++++|++|+++|+||++
T Consensus 216 -~~~~~~a~~~~~~~~~~~~~i~L~DTy~~~~~~~~~~~~~~~~~~~~~~~gvR~DSGDp~~~~~~~~~~ld~~G~~~~~ 294 (343)
T cd01567 216 -EEAAFEAFARWLPQFGGGLGIALIDTYDTDNGFLNALKLAKALGAGGGLLGVRLDSGDPVELIKKVRKHLDELGIDLNK 294 (343)
T ss_pred -HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf -7899999999998668987799845653676654579999998544775267549998599999999999975999787
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 0899738989999999999724897378633464314656666665567773216898
Q gi|254780455|r 323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCK 380 (418)
Q Consensus 323 k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyK 380 (418)
|+||+|||||.|++++++.++.++++++|||||+||||+ ++|++|+|||
T Consensus 295 ~~iv~S~~ld~e~~i~~~~~~~~~~~~~FGVGT~l~~~~---------~~~~l~~v~K 343 (343)
T cd01567 295 KKIIISGDLDTEEAIELLLEQGASPNDAFGVGTSLTNDL---------GRPPLGFVYK 343 (343)
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCC---------CCCCCCEEEC
T ss_conf 389998999889999999973898753997085606799---------9975484339
No 10
>KOG2511 consensus
Probab=100.00 E-value=0 Score=575.02 Aligned_cols=374 Identities=27% Similarity=0.361 Sum_probs=312.3
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 71001244011789999999998489965999999658875544000023699999999716999899999983777555
Q gi|254780455|r 9 DPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK 88 (418)
Q Consensus 9 ~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~ 88 (418)
+|.+-|+||||+||+||+||||+.+|+.+++|.+++|++| +.+.|.+++||+++|+++.||+||+|||+||++.+|+
T Consensus 3 e~~~vspL~tDlYkiTM~yA~wk~~~de~~vy~~~~R~np-f~g~~~~f~~LeE~irfl~N~~lt~eEi~~lkk~lP~-- 79 (420)
T KOG2511 3 EPPMVSPLDTDLYKITMAYAVWKAKPDERVVYKYTNRSNP-FGGNYEAFNWLEEQIRFLANLKLTDEEIDYLKKELPY-- 79 (420)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--
T ss_conf 9860235341689999999998508997247876403798-7740899988999999986357788899999976788--
Q ss_pred CCCCCHHHHHHHHHCCCCCCEE-------EECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 5578988999975089984168-------733992699985487786778889999998888877531348667999999
Q gi|254780455|r 89 KQLFEPKFLSWLSDFQLPEYDL-------SHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYA 161 (418)
Q Consensus 89 ~~~~~~~fl~~L~~~~f~~~~~-------~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~ 161 (418)
.++.|.+||+++.++-... .+.|+-|.|+|+|||..|||+|||+|++|||.|++++.+.|.+...
T Consensus 80 ---~eeaf~eyl~~ln~s~~~~~aIsegSvvf~k~pli~i~Gp~~~~~l~E~plLnLVs~A~~~~~da~~~re~q----- 151 (420)
T KOG2511 80 ---LEEAFYEYLRGLNCSDHPEEAISEGSVVFEKKPLIRIEGPWKVTILYEIPLLNLVSEAYFKFVDADWHREVQ----- 151 (420)
T ss_pred ---CHHHHHHHHHHCCCCCCCHHHCCCCCEECCCCCEEEEECCHHHEEEEECHHHHHHHHHHHEEECCCCCHHCC-----
T ss_conf ---719999998616877580644356743226886489734411246662358887646773343100030201-----
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf 99999998777674269975998424434797889999999984212120124788999972898767520489876400
Q gi|254780455|r 162 QAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA 241 (418)
Q Consensus 162 ~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~ 241 (418)
.....++|||+|||+|+ ++++.|++.+++|||+|||||++|++||||++||+||||||++.+
T Consensus 152 ---------------g~k~~~leFGtRR~rgp---~G~m~Askycy~ggf~~TSNV~~~k~ygip~~GT~aH~~v~~faS 213 (420)
T KOG2511 152 ---------------GEKAEFLEFGTRRRRGP---QGAMKASKYCYLGGFLGTSNVLFAKKYGIPVRGTVAHEWVMGFAS 213 (420)
T ss_pred ---------------CCHHHHHHHHHHHCCCC---CCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf ---------------10247766423430387---533001004565432341278889871999654220344531234
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHH-----HHCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 1220367865499999999996398-865986346898999998997-----3100243412888878999999999997
Q gi|254780455|r 242 ITRTDIETQNAPYQMMQQWNRLYDD-NLLIVLPDSFGTDFFLEHAPS-----WMTQWKGFRHDSASPIEGGEKIIAWWKK 315 (418)
Q Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~yp~-~~~i~L~DTy~~~~~l~~~~~-----~~~~~~GVR~DSGD~~~~~~k~~~~l~~ 315 (418)
+.+ -+.+++..|...|..++-. +.+++|+||++++.|++.+.. ++..+-|||+||||++++++|+|++|..
T Consensus 214 i~e---~~~~~~r~a~~k~~~~~~~~~~~~~Ltd~fs~Dv~~~~~~nf~Av~lAl~~~GvR~DSGdl~~~skkvr~~y~~ 290 (420)
T KOG2511 214 IDE---IYDKANRIADGKWTCTFGASNVQTALTDTFSTDVFLKSFPNFCAVALALNDLGVRQDSGDLAEYSKKVRKHYCD 290 (420)
T ss_pred HHH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 789---99998764244325777788899998844427779753774212455542115222689989999999999987
Q ss_pred CCCCC-CCEEEE---ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC-C------CCCCCCCCCC-EEEEEEE
Q ss_conf 79881-130899---738989999999999724897378633464314656666-6------6556777321-6898575
Q gi|254780455|r 316 MNCNP-QNKFLV---FSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCT-P------YQNLQTEKLQ-IVCKVTK 383 (418)
Q Consensus 316 ~Gidp-~~k~iv---~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~-~------~~~~~~~~l~-~VyKlve 383 (418)
.+.+| .+|.|+ +||+++++.+..+.++ ++.+++||||||||+|+...+ | +|-.+ .|++ +||||-+
T Consensus 291 V~~~~K~~~~~m~~~A~N~~ne~ti~~lnkq--~~e~~aFGIGTnl~t~~q~~sqPikls~dvtkvS-iP~~k~~~rLfg 367 (420)
T KOG2511 291 VERDPKPSKGIMYSDALNVLNEITIDALNKQ--GGEVDAFGIGTNLTTDFQKNSQPIKLSEDVTKVS-IPGNKIVIRLFG 367 (420)
T ss_pred HHCCCCCCCEEEEEECCCCHHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE-CCCCCEEEEEEC
T ss_conf 6416777623899842452118889999862--8903452044430012232468752345542530-356503556303
Q ss_pred ECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 7681116732688752488899999999809666
Q gi|254780455|r 384 ANDKHAVKLSDDPAKTTGDISEIKRYLKIFKIKK 417 (418)
Q Consensus 384 ~~g~P~~KlSd~~~K~tg~~~~~~~~~~~~~~~~ 417 (418)
.+|.|.+|||++..|.++++....+++.-|+-++
T Consensus 368 keGy~~vdI~~~e~ep~p~~~~~~~~khp~~~~~ 401 (420)
T KOG2511 368 KEGYPLVDISDLENEPPPDPGQVLRVKHPLNSKR 401 (420)
T ss_pred CCCCCEEEHHHCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 5785023532136899999660466514444444
No 11
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=0 Score=454.72 Aligned_cols=322 Identities=17% Similarity=0.151 Sum_probs=268.2
Q ss_pred CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 95225656710012440117899999999984899659999996588755440000236999999997169998999999
Q gi|254780455|r 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL 80 (418)
Q Consensus 1 m~~~~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL 80 (418)
|+++.+.++.-|.+-..||-|.+......-+.++|..|+++||.|++| ...+.+++|++++++.+++.++ ++..
T Consensus 1 ~~~~~~~~~~~I~~G~~tD~YF~rT~~Il~~~g~n~~Vt~evf~r~~p--~~~~~v~~Gl~ev~~ll~~~~v---~V~a- 74 (343)
T PRK08662 1 MMRFYIASEEEIKSGKTTDIYFERTVEILEHAGIDPKVRAEVTASSLP--KGEWGVFAGLEEVLELLEGKPV---DVYA- 74 (343)
T ss_pred CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCCCEEEECHHHHHHHHCCCCC---EEEE-
T ss_conf 965456898887568500899999999999859898399999981388--7665354329999998617995---4998-
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 83777555557898899997508998416873399269998548778677888999999888887753134866799999
Q gi|254780455|r 81 VENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLY 160 (418)
Q Consensus 81 ~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~ 160 (418)
-++...+.++||+|+|+||+.+++++||+||++||..+..+|
T Consensus 75 -------------------------l~EG~~~~~~EPvl~I~gp~~~~~~lET~lL~~L~~~s~iAT------------- 116 (343)
T PRK08662 75 -------------------------LPEGTLFDPKEPVMRIEGPYLEFGIYETALLGILRHASGIAT------------- 116 (343)
T ss_pred -------------------------ECCCCEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_conf -------------------------079777559985799996199999999999988728889999-------------
Q ss_pred HHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 99999999877767-42699759984244347978899999999842121201247889999728987675204898764
Q gi|254780455|r 161 AQAKKKLWSKIIKL-KNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVA 239 (418)
Q Consensus 161 ~~~~~~~~~k~~~~-~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~ 239 (418)
++.++ .+++++++++||+||+|+.. +..+.|+|++|||+||||+.+|+.||+|+.|||||||||+|
T Consensus 117 ---------~A~r~~~aA~~~~vl~fG~Rr~h~~~----a~~~~rAA~iGG~~gtS~~~a~~~~g~~~~GTmpHAlI~~~ 183 (343)
T PRK08662 117 ---------AAARIKEAAGDKPVLSFGARHLHPAI----APMADRAAYIGGCDGVSGVLGAELLGIKPSGTMPHALIIIF 183 (343)
T ss_pred ---------HHHHHHHHCCCCCEEECCCCCCCHHH----HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHC
T ss_conf ---------99999997599827815761238767----99999999752746623888998729998664403688773
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCC--HHHHHHHHHHHHCCCCEEECCC-----CCHHHHHHHHHH
Q ss_conf 0012203678654999999999963988-6598634689--8999998997310024341288-----887899999999
Q gi|254780455|r 240 AAITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSFG--TDFFLEHAPSWMTQWKGFRHDS-----ASPIEGGEKIIA 311 (418)
Q Consensus 240 ~~~~~~~~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~--~~~~l~~~~~~~~~~~GVR~DS-----GD~~~~~~k~~~ 311 (418)
++ +.+||++|.++||++ +.|+|+|||+ ....++.+..++.+..|||+|| ||+.++++++|+
T Consensus 184 g~-----------~~~A~~af~~~~p~~~p~i~LVDty~d~~~~al~va~~lg~~l~gVRLDT~~~r~Gd~~~l~~~vR~ 252 (343)
T PRK08662 184 GD-----------QVEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSRRGNFRKIVEEVRW 252 (343)
T ss_pred CC-----------HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 89-----------9999999999679998759999677724689999999848657889846898778877999999999
Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEE
Q ss_conf 99977988113089973898999999999972489737863346431465666666556777321689857576811167
Q gi|254780455|r 312 WWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVK 391 (418)
Q Consensus 312 ~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~K 391 (418)
.||++|++ ..+|++|+||||++|.++.+. +|+|||||+| ...|+++++|||||++|+|++|
T Consensus 253 ~LD~~G~~--~vkIv~Sgglde~~I~~l~~~-----vD~fGVGt~l------------~~~~~~d~t~DiVevdG~p~aK 313 (343)
T PRK08662 253 TLDLHGYS--HVKIFVSGGLDEEDIRELRDV-----VDGFGVGTSI------------SFAPPVDFSMDIVEVEGKPIAK 313 (343)
T ss_pred HHHHCCCC--CCEEEEECCCCHHHHHHHHHH-----CCEEEECCCC------------CCCCCCCEEEEEEEECCEEEEC
T ss_conf 85455799--828999489999999999864-----8689606655------------7898877589999999986220
Q ss_pred EECCCCCCCCC-HHHHHHH
Q ss_conf 32688752488-8999999
Q gi|254780455|r 392 LSDDPAKTTGD-ISEIKRY 409 (418)
Q Consensus 392 lSd~~~K~tg~-~~~~~~~ 409 (418)
.+..|||.+.| .+++|.|
T Consensus 314 ~Gr~~g~~~~p~lk~vr~~ 332 (343)
T PRK08662 314 RGKLPGVRENPKLKEIREY 332 (343)
T ss_pred CCCCCCCCCCCHHHHHHHH
T ss_conf 3578777768018999999
No 12
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=100.00 E-value=0 Score=449.61 Aligned_cols=290 Identities=19% Similarity=0.142 Sum_probs=242.4
Q ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 40117899999999984899659999996588755440000236999999997169998999999837775555578988
Q gi|254780455|r 16 LDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPK 95 (418)
Q Consensus 16 LdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~ 95 (418)
+.||.|+++|++.++++++|..|+|+||+|++| |++++||+++++++++++|+ +..
T Consensus 2 ~~TD~Yfl~t~~il~~~~~n~~v~~e~f~r~~p-----~~v~aGl~ev~~~l~~~~~~---v~a---------------- 57 (302)
T cd01571 2 RFTDVYFLRTRKILEKKGPNPTVTMEFTQRSLP-----WAVLCGLEEVLALLEGLPVK---VYA---------------- 57 (302)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-----CEEEECHHHHHHHHHCCCEE---EEE----------------
T ss_conf 511799999999999709997499999973488-----87875299999998459807---998----------------
Q ss_pred HHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997508998416873399269998548778677888999999888887753134866799999999999998777674
Q gi|254780455|r 96 FLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK 175 (418)
Q Consensus 96 fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 175 (418)
-++...+.+++|+++|+||+.+++++||++|++||..+..+|. +.++.
T Consensus 58 ----------~~EG~~v~p~epvl~I~Gp~~~~~~lEt~lLn~l~~~S~IAT~----------------------a~r~v 105 (302)
T cd01571 58 ----------LPEGTIFNPKEPVLRIEGPYQDFGELETAILGILARASSIATN----------------------AARVK 105 (302)
T ss_pred ----------CCCCCEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH
T ss_conf ----------0898884599857999971999999999999887588899999----------------------99999
Q ss_pred -CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf -2699759984244347978899999999842121201247889999728987675204898764001220367865499
Q gi|254780455|r 176 -NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPY 254 (418)
Q Consensus 176 -~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~ 254 (418)
++++.++++||+||+|+.. +.+ ..+|+++|||+||||+++++.||+|+.|||||||||+|+.. +.
T Consensus 106 ~aA~~~~v~~fg~Rr~~p~~---~~~-~~rAa~iGG~~~~s~~la~~~~g~~~~GTm~Hs~I~~~~~~----------~~ 171 (302)
T cd01571 106 LAAGDKPVISFGDRRDHPAI---QPM-DGRAAYIGGCDGVSTVLGAELLGEKPSGTMPHALIQIFGGD----------QV 171 (302)
T ss_pred HHCCCCCEEEECCCCCCHHH---HHH-HHHHHHEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHCCCC----------HH
T ss_conf 97499938974453359657---899-86886502823010578887659997455342667443895----------79
Q ss_pred HHHHHHHHHCCCC-CEEEEECCCCH--HHHHHHHHHHHCCCCEEECCC-----CCHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9999999963988-65986346898--999998997310024341288-----887899999999999779881130899
Q gi|254780455|r 255 QMMQQWNRLYDDN-LLIVLPDSFGT--DFFLEHAPSWMTQWKGFRHDS-----ASPIEGGEKIIAWWKKMNCNPQNKFLV 326 (418)
Q Consensus 255 ~a~~~~~~~yp~~-~~i~L~DTy~~--~~~l~~~~~~~~~~~GVR~DS-----GD~~~~~~k~~~~l~~~Gidp~~k~iv 326 (418)
+|+++|.++||.+ ..|+|+|||+. ...++.+.....+..|||+|| ||+.++++++|+.||++|+. ..+|+
T Consensus 172 ~A~~af~~~~p~~~~~i~LvDty~~~~~~al~~~~~~~~~l~gVRlDs~~~~~G~~~~l~~~vR~~LD~~G~~--~vkI~ 249 (302)
T cd01571 172 EAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDIRGYK--HVKIF 249 (302)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEE
T ss_conf 9999999867788976999965546688999999974600389980799875877999999999999766988--74899
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 7389899999999997248973786334643146566666655677732168985757681116732
Q gi|254780455|r 327 FSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLS 393 (418)
Q Consensus 327 ~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlS 393 (418)
+||||||++|.++.++ + +|+|||||+| .+.|+++++|||||+||+|++|..
T Consensus 250 aSggl~e~~I~~l~~~--g--ID~~GVGt~l------------~~ap~ld~~~dlVe~~G~p~~K~G 300 (302)
T cd01571 250 VSGGLDEEDIKELEDV--G--VDAFGVGTAI------------SKAPPVDFTMDIVEVNGQPIAKRG 300 (302)
T ss_pred EECCCCHHHHHHHHHC--C--CCEEECCCCC------------CCCCCCCEEEEEEEECCEEEECCC
T ss_conf 9699999999999857--9--9999818543------------799888868999999997711245
No 13
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=409.59 Aligned_cols=307 Identities=16% Similarity=0.111 Sum_probs=247.0
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 10012440117899999999984899659999996588755440000236999999997169998999999837775555
Q gi|254780455|r 10 PIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKK 89 (418)
Q Consensus 10 piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~ 89 (418)
.-|.+-.-||-|.+......-+.++|..|+++||.|+++ ++++|+.+++++|+.+.-..
T Consensus 17 ~~i~~G~~td~YF~rT~~il~~~~~~~~Vt~~~f~r~~~------~v~~G~~e~~~lL~~~~~~~--------------- 75 (355)
T PRK07188 17 ERIGEGWFSAVYFLKTREIIEKFNPNNIVTMQFFQRREN------AVLCGTDEVIALLKFFAKNP--------------- 75 (355)
T ss_pred HHHHCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCC------EEEECHHHHHHHHHHCCCCC---------------
T ss_conf 788578121788999999999868999599999876898------38773999999998453567---------------
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECC------CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 5789889999750899841687339------9269998548778677888999999888887753134866799999999
Q gi|254780455|r 90 QLFEPKFLSWLSDFQLPEYDLSHKK------GQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQA 163 (418)
Q Consensus 90 ~~~~~~fl~~L~~~~f~~~~~~~~e------g~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~ 163 (418)
-..++++++| +||+|+|+||+.+++++||+||++||..+..+|.
T Consensus 76 ---------------~~v~V~al~EG~~v~~~EPvl~I~G~~~~~~~lET~iL~~L~~~s~iAT~--------------- 125 (355)
T PRK07188 76 ---------------EKLKIYYLKDGDIINPKEPVLEIEGPYENFGFLEGIIDGILARRTSVATN--------------- 125 (355)
T ss_pred ---------------CCEEEEEECCCCEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf ---------------73059992798772699847999962999999999999876478899999---------------
Q ss_pred HHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf 99999877767-42699759984244347978899999999842121201247889999728987675204898764001
Q gi|254780455|r 164 KKKLWSKIIKL-KNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAI 242 (418)
Q Consensus 164 ~~~~~~k~~~~-~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~ 242 (418)
+.++ .+++++++++||+||+|.. .| ....||+++|||+||||+.+|+.||+|+.|||||||||+|...
T Consensus 126 -------A~r~~~aA~~k~vl~fg~R~~h~~-~a---~~~~rAA~iGG~~g~Sn~~a~~~~g~~~~GTMpHAlI~~f~Gd 194 (355)
T PRK07188 126 -------AYNVVQAANEKPVIFMGDRADHYL-LQ---AGDGYAAYIGGISAFSTQAQNEWWGDSGMGTMPHALIQMFNGD 194 (355)
T ss_pred -------HHHHHHHCCCCEEEECCCCCCCHH-HH---HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHCCCC
T ss_conf -------999998649791882147565801-35---8989999974974111387897559998664002555302788
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHHHHCCCCEEECCC---------------------
Q ss_conf 220367865499999999996398865986346898--999998997310024341288---------------------
Q gi|254780455|r 243 TRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT--DFFLEHAPSWMTQWKGFRHDS--------------------- 299 (418)
Q Consensus 243 ~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~--~~~l~~~~~~~~~~~GVR~DS--------------------- 299 (418)
+.+|+++|.++||++.+++|+|||+. ...++.+..++.++.|||+||
T Consensus 195 ----------~~~A~~af~~~~P~~~~i~LvD~~~d~i~~al~va~~~g~~L~gVRLDTsg~l~d~~~~~~~~~~~~~~~ 264 (355)
T PRK07188 195 ----------VVEACKAYAKTFPEDELVALIDYNNDVITDALKVAREFGDKLKGVRVDTSKNLIDKYFIRNPEVLGTFDP 264 (355)
T ss_pred ----------HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCC
T ss_conf ----------8999999998589998799995885799999999998386677899778762222000112234565222
Q ss_pred -CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf -8878999999999997798811308997389899999999997248973786334643146566666655677732168
Q gi|254780455|r 300 -ASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIV 378 (418)
Q Consensus 300 -GD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~V 378 (418)
||..++++++|+.||++|+. ..+|++|+||||++|..+.+ .++++|+|||||+|.+ ...+..
T Consensus 265 ~Gv~~~li~~vR~~LD~aG~~--~vKIvaSgglde~~I~~l~~--~gapID~fGVGt~l~~-------------~~~~~t 327 (355)
T PRK07188 265 YGVNPYLIFALRKALDENGGK--HVKIIVSSGFDEKKIKEFEK--QNVPVDIYGVGSSLLK-------------INIHFT 327 (355)
T ss_pred CCCHHHHHHHHHHHHHHCCCC--CCEEEEECCCCHHHHHHHHH--CCCCEEEEEECCCCCC-------------CCCCCE
T ss_conf 574899999999999767998--71799968999999999997--7997018950676678-------------877605
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 9857576811167326887524888999999
Q gi|254780455|r 379 CKVTKANDKHAVKLSDDPAKTTGDISEIKRY 409 (418)
Q Consensus 379 yKlve~~g~P~~KlSd~~~K~tg~~~~~~~~ 409 (418)
.++||+||+|++|.+ |.-++++..+++
T Consensus 328 ~DiVevdG~p~aK~G----R~~~~n~rl~~v 354 (355)
T PRK07188 328 GDAVELNGKKEAKAG----RKYRPNPRLERV 354 (355)
T ss_pred EEEEEECCEEHHHCC----CCCCCCCCHHHC
T ss_conf 779999998632137----778999551206
No 14
>pfam04095 NAPRTase Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase (EC:2.4.2.11) is the rate limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also includes Pre-B cell enhancing factor that is a cytokine. This family is related to Quinolinate phosphoribosyltransferase pfam01729.
Probab=100.00 E-value=0 Score=418.92 Aligned_cols=230 Identities=37% Similarity=0.468 Sum_probs=195.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH-----
Q ss_conf 759984244347978899999999842121201247889999728987675204898764001220367865499-----
Q gi|254780455|r 180 LKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPY----- 254 (418)
Q Consensus 180 ~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~----- 254 (418)
++++|||+|||||+++|..+. +|++++|+|||||+||++|+|||+|||||||+|+|+++......++.++.
T Consensus 1 fkl~dFG~RR~~s~~~~~~~~----~A~l~gf~GTSNv~a~~~~~Ip~~GT~aH~~~~~~~e~~~~~~~~~~~~~~~~~~ 76 (243)
T pfam04095 1 FKLHDFGTRRRSSLESQEIVG----SAHLVNFLGTSNVLAAAGYSIPAAGTSAHEWWGAFQELDAFRNMLEQFQKGKLSV 76 (243)
T ss_pred CCCCCCCCCCCCCHHHHHHHH----HHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 930506888879879999999----9986278300079999866999654034041222265579999999655688244
Q ss_pred --HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCC----CEEEEEC
Q ss_conf --9999999963988659863468989999989973100243412888878999999999997798811----3089973
Q gi|254780455|r 255 --QMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQ----NKFLVFS 328 (418)
Q Consensus 255 --~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~----~k~iv~S 328 (418)
.+++.|..+| +.+++.|.|++.+..|++.+. .++.|||+|||||.++++++|++|+++|++|. +|.||+|
T Consensus 77 ~~d~yd~~~~~~-~~l~~~L~d~i~~~~~l~~~~---~~~~gvR~DSGD~~~~~~~~~~~~~~~g~~~~k~~~~~~Ii~s 152 (243)
T pfam04095 77 VSDALDLWLAEY-GNLGIALTDLVGTDAFLRDFP---LYFLGVRPDSGDPVEWGEKLIAHFGSTNIDGYKVLNTKRLIFS 152 (243)
T ss_pred EHHHHHHHHHHH-CCCHHHCCHHHHHHHHHHHCC---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 148999899885-510111552430378898568---8750464588876899999999999739985567882699977
Q ss_pred CCCCHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCC-CHHHH
Q ss_conf 89899999999997248-97378633464314656666665567773216898575768111673268875248-88999
Q gi|254780455|r 329 DNLDVDSIIYTYKHFEN-RVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTG-DISEI 406 (418)
Q Consensus 329 d~Ld~e~i~~l~~~~~~-~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~tg-~~~~~ 406 (418)
|||||++|.+|++++++ +++++|||||+|+|++...+.....+.+++++|+|+++|+|+|++|+||+++|.|| ++...
T Consensus 153 d~Lde~~i~~l~~~~~~~~~~~~FGiGt~L~t~~~~~~~~~v~K~~al~i~~k~v~i~g~P~~klS~~~~K~~~~dp~~~ 232 (243)
T pfam04095 153 DGLDVEKIIEILEHLKGNGFNIAFGIGTNLTQDLNRDTLGFAYKLTPLNIVIKLVEVNGDPVTKLSDSSGKGRCGDPAFV 232 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCCCEEECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99999999999999975487058851643130588886455332265156518998379855235788777747998999
Q ss_pred HHHHHHCCCCC
Q ss_conf 99999809666
Q gi|254780455|r 407 KRYLKIFKIKK 417 (418)
Q Consensus 407 ~~~~~~~~~~~ 417 (418)
.+++++|++.+
T Consensus 233 ~~~r~~~~~~~ 243 (243)
T pfam04095 233 DLLRRVFGNGE 243 (243)
T ss_pred HHHHHHHCCCC
T ss_conf 99999858899
No 15
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.6e-40 Score=295.87 Aligned_cols=356 Identities=17% Similarity=0.146 Sum_probs=258.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHHCC-CCEEEEE-EEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 01244011789999999998489-9659999-996588755440000236999999997169998999999837775555
Q gi|254780455|r 12 ISSLLDTDFYKILMLQLIWKFYP-DIKVTFS-LFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKK 89 (418)
Q Consensus 12 I~SlLdTD~YkltM~~a~~~~~~-~~~v~f~-~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~ 89 (418)
++.||+||.||+ +||.||| ++..+|+ +..|+.. ....++|+|||..|+..-.-.+|.++++--+...-.++.
T Consensus 5 ~N~iL~tDsYK~----sH~~qYP~gt~~v~sy~e~R~g~--~~d~vvffGLQ~~lk~yL~~~it~~~i~ea~~~~~~h~~ 78 (462)
T PRK09198 5 LNPLLNTDSYKA----SHRLQYPPGTTYLYSYLESRSGG--RYDKTVFFGLQYFIKEYLIQPITHAMIDDAEDILDAHGE 78 (462)
T ss_pred ECHHHHCCCCCC----CHHHHCCCCCCEEEEEEEECCCC--CCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 003351353102----44866899864589989854798--888559997599999998450757668899999998676
Q ss_pred CCCCHHHHHHHHH--CCCCCCEEEECCCCE------EEEEECCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHH
Q ss_conf 5789889999750--899841687339926------999854877867788899999988-8887753134866799999
Q gi|254780455|r 90 QLFEPKFLSWLSD--FQLPEYDLSHKKGQY------VLNFHGLWKDVTLWEIPSLIIIST-LYSRITVRSMNPFSVDLLY 160 (418)
Q Consensus 90 ~~~~~~fl~~L~~--~~f~~~~~~~~eg~~------~i~ieGp~~~~~l~EtplL~iine-~~~~~~~~~~~~~~~~~~~ 160 (418)
+++...+-.-+.. -.+|.++.++|||.+ +++|+++..+|.|+-.+|.++|+. +|++.|.++ ....+
T Consensus 79 ~Fn~~gw~~i~~~~~G~LPi~I~AvpEGt~Vp~~~pl~tienTdp~~~WL~nylET~Ll~~iWyp~TvAT-----~s~~~ 153 (462)
T PRK09198 79 PFNEAGWEKIVDEYGGYLPIRIKAVPEGSVVPVHNVLMTIENTDPEFFWLPNYLETLLLRNVWYPSTVAT-----ISWEY 153 (462)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_conf 0307889999997189675599974787442388746999938987403888999999987466589999-----99999
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHH----HHHCCCCCCCC----CC
Q ss_conf 99999999877767426997599842443479788999999998421212012478899----99728987675----20
Q gi|254780455|r 161 AQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALL----AMNYKINAIGT----SA 232 (418)
Q Consensus 161 ~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~a----a~~~gi~~~GT----ma 232 (418)
.....+...++..-.+.-+++++|||+|+++|.+ .+++.+ +|++.+|.||+++.+ .+.|+-+.+|. ++
T Consensus 154 kkii~~yl~~T~d~~~~l~f~lHDFg~RG~ss~e--sa~~gg--~aHL~~F~GTDTv~a~~~~~~yY~~~~~g~SIpAsE 229 (462)
T PRK09198 154 KQLIRQYLEKTADDLEFLPFQLHDFGARGMSSLE--SAAIGG--AAHLVSFLGTDTIAALLAAEEYYAEGMAGFSIPAAE 229 (462)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHH--HHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 9999999985188833466521366656788678--889755--788432577552888999998669975114543133
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHHCC-------CCEEECCCCCHHH
Q ss_conf 48987640012203678654999999999963-988659863468989999989973100-------2434128888789
Q gi|254780455|r 233 HELPMVAAAITRTDIETQNAPYQMMQQWNRLY-DDNLLIVLPDSFGTDFFLEHAPSWMTQ-------WKGFRHDSASPIE 304 (418)
Q Consensus 233 Hs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~y-p~~~~i~L~DTy~~~~~l~~~~~~~~~-------~~GVR~DSGD~~~ 304 (418)
||.|++||. +.|.+||+.+++.| |+....+++||||+++++.+.-...+. -..||+|||||..
T Consensus 230 HStmts~g~---------~~E~~af~n~l~~f~p~~i~svVsDSyD~~~a~~~i~~~Lk~~I~~r~g~lViRPDSGDpv~ 300 (462)
T PRK09198 230 HSVMTSWGR---------EGELEAYRNMIEQGYPGGIVSVVSDSYDLWNAITEIWPELKDEILARGAKLVIRPDSGDPVD 300 (462)
T ss_pred HHEEECCCC---------CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 320211266---------60899999999984899789999440569999999999999999726982898079998377
Q ss_pred HHHHHHHHHHH-CCCCC---------CCEEEEECCCCCHHHHHHHHHHHCCC----CEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99999999997-79881---------13089973898999999999972489----737863346431465666666556
Q gi|254780455|r 305 GGEKIIAWWKK-MNCNP---------QNKFLVFSDNLDVDSIIYTYKHFENR----VQMIFGWGTNLTNDFDGCTPYQNL 370 (418)
Q Consensus 305 ~~~k~~~~l~~-~Gidp---------~~k~iv~Sd~Ld~e~i~~l~~~~~~~----~~~~fGIGT~Lt~d~~~~~~~~~~ 370 (418)
...++++.|.+ +|..- ....+|.+||+|.++|.+|++....+ .+++||||..| ++..
T Consensus 301 iv~~~l~~L~~~FG~t~N~KGYKVL~~~vrvIqGDgI~~~~i~~Il~~l~~~G~sa~Ni~FG~Gg~l---------lQ~~ 371 (462)
T PRK09198 301 IICGALELLDDIFGSTVNSKGYKVLNKHVGLIQGDGITLERIEAILEALKAKGFAADNIVFGMGGAL---------LQYV 371 (462)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHH---------HCCC
T ss_conf 7999999999984971057752604764216855873999999999999975986424355115344---------3036
Q ss_pred CCCCCCEEEEEE--EECCC--CEEEE-ECCCCCCC
Q ss_conf 777321689857--57681--11673-26887524
Q gi|254780455|r 371 QTEKLQIVCKVT--KANDK--HAVKL-SDDPAKTT 400 (418)
Q Consensus 371 ~~~~l~~VyKlv--e~~g~--P~~Kl-Sd~~~K~t 400 (418)
..+.++.+||.. ++||+ ++.|= -.|++|..
T Consensus 372 ~RDT~~fA~K~sa~~v~g~~~~v~K~PiTD~gKkS 406 (462)
T PRK09198 372 NRDTQGFAMKASAIEVNGEWIDIFKDPITDQGKKS 406 (462)
T ss_pred CCCCCCCEEEEEEEEECCEEEEEEECCCCCCCCCC
T ss_conf 64300412057778888987674207888996557
No 16
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=100.00 E-value=1.8e-39 Score=290.10 Aligned_cols=344 Identities=17% Similarity=0.140 Sum_probs=243.0
Q ss_pred HHCCHHHHHHHHHHHHHHCCC-CEEEEE-EEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHH-HHHHHHCCCCCCC--
Q ss_conf 440117899999999984899-659999-99658875544000023699999999716999899-9999837775555--
Q gi|254780455|r 15 LLDTDFYKILMLQLIWKFYPD-IKVTFS-LFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKE-RKWLVENSFYGKK-- 89 (418)
Q Consensus 15 lLdTD~YkltM~~a~~~~~~~-~~v~f~-~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~ee-i~yL~~~~~~~~~-- 89 (418)
||.||.||+ +||.|||. +..+|+ +..|... ....++|+|||..|+.+..-.|++++ ++-.+.....+..
T Consensus 1 iL~tDsYK~----sH~~qYP~gt~~v~sy~e~R~~~--~~d~vvffGlQ~~lk~yL~~~~~~~~~i~~a~~v~~~h~~~~ 74 (407)
T cd01569 1 LLATDSYKV----SHRLQYPPGTTAVYSYLEPRGGK--YYDQTVFFGLQYFLKKYLIDPVNRDFFIDEAEAVFEAHFGMN 74 (407)
T ss_pred CCCCCCCCC----CHHHHCCCCCCEEEEEEEECCCC--CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 976430201----35866899875589999855887--778669972899999999876305765648999999846544
Q ss_pred -CCCCHHHHHHHH---HCCCCCCEEEECCCCE------EEEEECCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHH
Q ss_conf -578988999975---0899841687339926------999854877867788899999988-88877531348667999
Q gi|254780455|r 90 -QLFEPKFLSWLS---DFQLPEYDLSHKKGQY------VLNFHGLWKDVTLWEIPSLIIIST-LYSRITVRSMNPFSVDL 158 (418)
Q Consensus 90 -~~~~~~fl~~L~---~~~f~~~~~~~~eg~~------~i~ieGp~~~~~l~EtplL~iine-~~~~~~~~~~~~~~~~~ 158 (418)
-.|...-++++. +..+|.++.++|||.+ +++|+++..++.|+-.+|.++|+. +|++.|.++ ...
T Consensus 75 ~~~fn~~gw~~I~~~h~G~LPi~I~AvpEGt~Vp~~~pl~tvenT~p~~~WL~nylET~Ll~~iWyp~TvAT-----~s~ 149 (407)
T cd01569 75 DLPFNEDGWRHILELHDGYLPIEIRAVPEGTVVPTKNVLMTVENTDPDFFWLTNYLETILLRNVWYPSTVAT-----ISR 149 (407)
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHH
T ss_conf 556338889999997499763599985898663489867999818987425888999999987566588999-----999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHH---HH--HCCCCCCC----
Q ss_conf 9999999999877767426997599842443479788999999998421212012478899---99--72898767----
Q gi|254780455|r 159 LYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALL---AM--NYKINAIG---- 229 (418)
Q Consensus 159 ~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~a---a~--~~gi~~~G---- 229 (418)
.+.....+...++..-.+.-+++++|||+|+++|.+ .+++.+ +|++.+|.||+++.+ ++ .++-+..|
T Consensus 150 ~~k~ii~~yl~~T~d~~~~l~f~lHDFg~RG~ss~e--sA~~gg--~AHL~~F~GTDTi~a~~~a~~~y~~~~~~g~SIp 225 (407)
T cd01569 150 EYKKILRKYAKETSDNLEFLPFQLHDFGMRGMSSLE--SAALGG--AAHLVNFKGTDTIPALDAAYAYYYEDPMAGFSIP 225 (407)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHH--HHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCCC
T ss_conf 999999999985178723453201476656788678--899878--9998627883178889999974367764011333
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCC-------CCEEECCCCCH
Q ss_conf 52048987640012203678654999999999963988659863468989999989973100-------24341288887
Q gi|254780455|r 230 TSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQ-------WKGFRHDSASP 302 (418)
Q Consensus 230 TmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~-------~~GVR~DSGD~ 302 (418)
..+||.+++++. +.|.+||+++++.||+....+++||||.++++.+..+.++. -..||+|||||
T Consensus 226 AsEHStmts~g~---------e~E~~af~n~l~~fp~~~~siVsDSyD~~~~~~~~~~~Lk~~I~~r~g~lViRPDSGDp 296 (407)
T cd01569 226 AAEHSTMTAWGR---------ERELEAFRNLLEQFGPGIVSVVSDSYDFWNALTLWGPRLKDEILARGGTLVIRPDSGDP 296 (407)
T ss_pred CHHHEEEEECCC---------CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf 201115664375---------54999999999977987399951513577779999999999998379829994799983
Q ss_pred HHHHHHHHHHHHHC-CCCCC---------CEEEEECCCCCHHHHHHHHHHHCCC----CEEEEEECCCCCCCCCCCCCCC
Q ss_conf 89999999999977-98811---------3089973898999999999972489----7378633464314656666665
Q gi|254780455|r 303 IEGGEKIIAWWKKM-NCNPQ---------NKFLVFSDNLDVDSIIYTYKHFENR----VQMIFGWGTNLTNDFDGCTPYQ 368 (418)
Q Consensus 303 ~~~~~k~~~~l~~~-Gidp~---------~k~iv~Sd~Ld~e~i~~l~~~~~~~----~~~~fGIGT~Lt~d~~~~~~~~ 368 (418)
.....++++.|.+. |..-+ ...+|.+||+|.++|.+|++....+ .+++||||..| ++
T Consensus 297 ~~ii~~~l~~L~~~FG~t~N~KGYKvL~~~vriIqGDgI~~~~i~~Il~~l~~~G~sa~Ni~FG~Gg~l---------lQ 367 (407)
T cd01569 297 VDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILERLKAKGFASENIVFGMGGGL---------LQ 367 (407)
T ss_pred HHHHHHHHHHHHHHHCCEECCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHEEEECCHHH---------HC
T ss_conf 788998999999984872157751614774237854886999999999999977983142267416777---------50
Q ss_pred CCCCCCCCEEEEEE--EECCC--CEEE
Q ss_conf 56777321689857--57681--1167
Q gi|254780455|r 369 NLQTEKLQIVCKVT--KANDK--HAVK 391 (418)
Q Consensus 369 ~~~~~~l~~VyKlv--e~~g~--P~~K 391 (418)
....+.++.+||.. ++||+ ++.|
T Consensus 368 ~~~RDT~~fA~K~s~~~v~G~~~~v~K 394 (407)
T cd01569 368 KVTRDTQGFAMKASAIEINGKWRDVFK 394 (407)
T ss_pred CCCCCHHHHHHEEEEEEECCEEEEEEE
T ss_conf 377521234462556888999877444
No 17
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=100.00 E-value=1.2e-37 Score=277.68 Aligned_cols=275 Identities=22% Similarity=0.168 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 17899999999984899659999996588755440000236999999997169998999999837775555578988999
Q gi|254780455|r 19 DFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLS 98 (418)
Q Consensus 19 D~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~ 98 (418)
|+|+++|.|+| ..|+.+++|+|++|+++ +.+++|++++++.++.++|.....
T Consensus 1 D~y~~~~~~~~--~~~~~~~~~~~~~R~~~-----~gv~~G~~~~~~~l~~~~~~~~~~--------------------- 52 (281)
T cd00516 1 DLYKLTMIQAY--PPPDTRATAEFTAREDP-----YGVLAGLEEALELLELLRFPGPLV--------------------- 52 (281)
T ss_pred CCHHHHHHHHC--CCCCCEEEEEEEEECCC-----CEEEECHHHHHHHHHHCCCCCCEE---------------------
T ss_conf 90788798743--89998899999997599-----989925899999999669998479---------------------
Q ss_pred HHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 97508998416873399269998548778677888999999888887753134866799999999999998777674269
Q gi|254780455|r 99 WLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFS 178 (418)
Q Consensus 99 ~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 178 (418)
...-++...+.+|+++++|+|||.+++++|+++|+++++++..+|.+.. ...++ ...
T Consensus 53 ----~~~~~eG~~v~~~~~il~i~G~~~~~~~~Er~~Ln~l~~~sgiAT~t~~---------------~v~~~----~~~ 109 (281)
T cd00516 53 ----ILAVPEGTVVEPGEPLLTIEGPARELLLLERVLLNLLQRLSGIATATAR---------------YVEAA----KGA 109 (281)
T ss_pred ----EEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH----CCC
T ss_conf ----9977999992699889999983999999999999999999999999999---------------99984----557
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 97599842443479788999999998421212012478899997289876752048987640012203678654999999
Q gi|254780455|r 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQ 258 (418)
Q Consensus 179 ~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~ 258 (418)
++++.+|||||+++ +..+...+|+..||+.++||.+.++.+..++.|||+|||+|++. +..|+.
T Consensus 110 ~~~~~~~~TRkt~p----~~r~~~~~Av~~GG~~~hr~~l~d~~li~~nh~t~~h~~~~~~~------------~~~a~~ 173 (281)
T cd00516 110 NTKVHDFGTRKTTP----GLRLLEKYAVLIGGGDGHRNGLSDAILIKDNHGTMAHSIIQAFG------------ELAAVK 173 (281)
T ss_pred CCCEEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHCCCHHHCCC------------HHHHHH
T ss_conf 99649920567785----06999999998468655216541103353207654375553146------------999999
Q ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEECCCC-----CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 99996398865986346898999998997310-0243412888-----87899999999999779881130899738989
Q gi|254780455|r 259 QWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMT-QWKGFRHDSA-----SPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLD 332 (418)
Q Consensus 259 ~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~-~~~GVR~DSG-----D~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld 332 (418)
++.+.+|. ..++++||++.+ +.+....... +.+|||+||| +++.+..+.+++|+..+. .+++|++|||+|
T Consensus 174 ~~~~~~~~-~~~~~idve~~~-~~~~~~~~~~~~~~~IrlD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SGgi~ 249 (281)
T cd00516 174 ALRRWLPE-LFIALIDVEVDT-LEEALEAAKAGGADGIRLDSGSPEELDPAVLILKARAHLDGKGL--PRVKIEASGGLD 249 (281)
T ss_pred HHHHHCCC-CCCEEEEEEECC-HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCC
T ss_conf 99986787-760269999788-99999999549999999797995889999999999987632578--977999979999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 999999999724897378633464314656666665567773216898
Q gi|254780455|r 333 VDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCK 380 (418)
Q Consensus 333 ~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyK 380 (418)
++.|....+. + +|.|||||.+++ .|++++++|
T Consensus 250 ~~~i~~~a~~--g--vd~i~iG~~~~~------------~~~ldi~~k 281 (281)
T cd00516 250 EENIRAYAET--G--VDVFGVGTLLHS------------APPLDIVLK 281 (281)
T ss_pred HHHHHHHHHC--C--CCEEEECCCCCC------------CCCCCEECC
T ss_conf 9999999967--9--899993822178------------841667739
No 18
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.48 E-value=0.00011 Score=51.53 Aligned_cols=246 Identities=13% Similarity=0.085 Sum_probs=142.2
Q ss_pred CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99659999996588755440000236999999997169998999999837775555578988999975089984168733
Q gi|254780455|r 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK 113 (418)
Q Consensus 34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~ 113 (418)
++..++..+..|.+ ++++|+......++.+.. ++++ +-.+...+.
T Consensus 28 ~~~~~~a~i~are~-------gV~~G~~~a~~i~~~~~~---~~~~-------------------------~~~dG~~v~ 72 (279)
T PRK08385 28 EDMNASAVIIAKQE-------GVIAGVEEARALFEHFGV---AVEV-------------------------KKRDGETVK 72 (279)
T ss_pred CCCEEEEEEEECCC-------EEEECHHHHHHHHHHCCC---EEEE-------------------------ECCCCCEEC
T ss_conf 99669999997899-------899869999999997498---8999-------------------------928898906
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 99269998548778677888999999888887753134866799999999999998777674269975998424434797
Q gi|254780455|r 114 KGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSL 193 (418)
Q Consensus 114 eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~ 193 (418)
+|+++++++||.......|..+||++..+...+| ...++..++. ..+.++-=++||..++-
T Consensus 73 ~g~~i~~i~G~a~~il~~ER~~LN~Lq~~SGIAT---------------~T~~~v~~~~----~~~~~~~i~~TRKT~PG 133 (279)
T PRK08385 73 AGEVILELKGNARAILLVERTALNIIGRMSGIAT---------------ETRKLVDLVR----AVNPKVRVAGTRKTLPG 133 (279)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH----HCCCCEEEEECCCCCCC
T ss_conf 9989999998789999999999999999999999---------------9999999986----13997299854777854
Q ss_pred HHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCC----CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 88999999998421212012478899997289----87675204898764001220367865499999999996398865
Q gi|254780455|r 194 TWQKWCIEALQEGIKDSFLGTSNALLAMNYKI----NAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLL 269 (418)
Q Consensus 194 ~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi----~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~ 269 (418)
. -.-..+|...||..- +++|+ ...- .|-.. ... ..++..+-+..|...-
T Consensus 134 ~----R~l~k~AV~~GGg~~-------HR~~Lsd~iLiKd--NHi~~---~~~-----------~~av~~~r~~~~~~~I 186 (279)
T PRK08385 134 L----RLIDKKAIMIGGGEP-------HRFSLSDAILIKD--NHLAL---VPL-----------EEAIRRAKEFSVYKVV 186 (279)
T ss_pred C----HHHHHHHHHHCCCCC-------CCCCCCCCEEECC--CHHHH---CCH-----------HHHHHHHHHHCCCCEE
T ss_conf 0----799999998738635-------5688763278801--06764---388-----------9999999984899618
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 98634689899999899731002434128888789999999999977988113089973898999999999972489737
Q gi|254780455|r 270 IVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQM 349 (418)
Q Consensus 270 i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~ 349 (418)
..=+||. +.+. .....+.+.|.+|--+|.. .+++++.+++.|+.|+ ..|-+|+|+|++.+.+.-+ ..+|
T Consensus 187 eVEv~~l--ee~~---~a~~~g~d~I~LDn~s~e~-~~~~v~~l~~~~~~~~-v~ieaSGGI~~~ni~~ya~----tGVD 255 (279)
T PRK08385 187 EVEVESL--EDAL---KAAKAGADIIMLDNMTPEE-IREVIEALKELGLREK-VKIEVSGGITPETIAEYAK----LDVD 255 (279)
T ss_pred EEEECCH--HHHH---HHHHCCCCEEEECCCCHHH-HHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHHH----CCCC
T ss_conf 9970989--9999---9997699999984999999-9999999875076897-8999978998999999985----5989
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 8633464314656666665567773216898575
Q gi|254780455|r 350 IFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTK 383 (418)
Q Consensus 350 ~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve 383 (418)
.+.+|- | -.+.+++++-.++++
T Consensus 256 ~IS~g~-l-----------t~s~~~~D~sl~iv~ 277 (279)
T PRK08385 256 VISLGA-L-----------THSVRNFDVSLEIVK 277 (279)
T ss_pred EEECCH-H-----------HCCCCCCCEEEEEEC
T ss_conf 998497-7-----------769962133799975
No 19
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.34 E-value=0.0003 Score=48.65 Aligned_cols=267 Identities=15% Similarity=0.087 Sum_probs=146.0
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 71001244011789999999998489965999999658875544000023699999999716999899999983777555
Q gi|254780455|r 9 DPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK 88 (418)
Q Consensus 9 ~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~ 88 (418)
+.+|...|.-|....-.. +. .-++..++..+..|.+ .+++|+...-..++.+-. ++.|
T Consensus 4 ~~~i~~~L~ED~~~gDlT-s~--~~~~~~~~a~i~are~-------gv~~G~~~a~~i~~~~~~---~v~~--------- 61 (272)
T PRK05848 4 KDFLEEALKEDLGRGDLF-ER--LEKDFKATAKIIAKSE-------GVFSGEKYALELLEMTGI---ECVW--------- 61 (272)
T ss_pred HHHHHHHHHHCCCCCCCC-CC--CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHHCC---EEEE---------
T ss_conf 999999997089999622-62--6899738999998799-------899879999999998598---8999---------
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 55789889999750899841687339926999854877867788899999988888775313486679999999999999
Q gi|254780455|r 89 KQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW 168 (418)
Q Consensus 89 ~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (418)
+-.+.-.+.+|+++++++||-......|..+||++..+...+|.+ .++.
T Consensus 62 ----------------~~~dG~~v~~g~~i~~i~G~~~~il~~ER~~LN~L~~~SGIAT~T---------------~~~v 110 (272)
T PRK05848 62 ----------------TIKDGESFKKGDTLMEIRGDFSMLLKVERTLLNLLQHSSGIATLT---------------SRFV 110 (272)
T ss_pred ----------------EECCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
T ss_conf ----------------908898906999999999778999999999999999999999999---------------9999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHH
Q ss_conf 87776742699759984244347978899999999842121201247889999728987675204898764001220367
Q gi|254780455|r 169 SKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIE 248 (418)
Q Consensus 169 ~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~ 248 (418)
.+ +++.++-=++||..++-. -.-..+|...||. .-+++|+...--.-...+.+.++..
T Consensus 111 ~~------~~~~~~~i~~TRKT~Pg~----R~l~k~AV~~GGg-------~~HR~gLsd~ilikdNHi~~~g~~~----- 168 (272)
T PRK05848 111 EA------INSHKVKLLDTRKTRPLL----RIFEKYSVRNGGA-------SNHRLGLDDCLMLKDTHLKHIKDLK----- 168 (272)
T ss_pred HH------HCCCCEEEECCCCCCCCH----HHHHHHHHHHCCC-------CCEECCCCCEEEECHHHHHHHCCHH-----
T ss_conf 97------189973997079777363----7999999996686-------5411468760788666887726899-----
Q ss_pred HHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 8654999999999963988-659863468989999989973100243412888878999999999997798811308997
Q gi|254780455|r 249 TQNAPYQMMQQWNRLYDDN-LLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVF 327 (418)
Q Consensus 249 ~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~ 327 (418)
.+.....+..|.. .-..-+|+. +.+ ......+.+.|.+|--+|...- ++++..++ + .|. .+|-+
T Consensus 169 ------~ai~~~r~~~~~~~kIeVEv~~l--~ea---~~a~~~gaDiI~LDn~~~e~~k-~~v~~~~~-~-~~~-v~iea 233 (272)
T PRK05848 169 ------SFIQHARKNIPFTAKIEIECESL--EEA---KEAMNAGADIVMCDNMSVEETK-EIVAYRNA-N-YPH-VLLEA 233 (272)
T ss_pred ------HHHHHHHHHCCCCCEEEEECCCH--HHH---HHHHHCCCCEEEECCCCHHHHH-HHHHHHHC-C-CCC-EEEEE
T ss_conf ------99999998589984699974999--999---9998459998995899999999-99998746-4-887-79999
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 389899999999997248973786334643146566666655677732168985
Q gi|254780455|r 328 SDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV 381 (418)
Q Consensus 328 Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl 381 (418)
|+|++++.+.+.-+ ..+|...+|. || .+.|++++-.++
T Consensus 234 SGGI~~~ni~~yA~----~GvD~Is~g~-lt-----------h~a~~~D~sl~i 271 (272)
T PRK05848 234 SGNISLETINAYAK----SGVDAISSGS-LI-----------HQATWIDMSMKM 271 (272)
T ss_pred ECCCCHHHHHHHHH----CCCCEEECCH-HH-----------CCCCCCCEEEEC
T ss_conf 79998999999996----5999998797-76-----------799341348844
No 20
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.88 E-value=0.003 Score=41.75 Aligned_cols=248 Identities=15% Similarity=0.074 Sum_probs=132.7
Q ss_pred CCCHHHHCCHHHH--HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf 1001244011789--99999999848996599999965887554400002369999999971699989999998377755
Q gi|254780455|r 10 PIISSLLDTDFYK--ILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYG 87 (418)
Q Consensus 10 piI~SlLdTD~Yk--ltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~ 87 (418)
.+|..+|.-|.-. +|. ++. .-++..++..++.|.+ .+++|++..-+.++.+- .-+++|
T Consensus 2 ~~i~~~L~ED~~~gDlTt-~~l--~~~~~~~~a~i~are~-------gvl~G~~~~~~i~~~~~--~~~~~~-------- 61 (269)
T cd01568 2 ALLDRALAEDLGYGDLTT-EAL--IPGDAPATATLIAKEE-------GVLAGLEVAEEVFELLD--GIEVEW-------- 61 (269)
T ss_pred HHHHHHHHCCCCCCCCCC-CCC--CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHCC--CEEEEE--------
T ss_conf 789999970899997784-210--7899759999997899-------89986999999999859--819999--------
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 55578988999975089984168733992699985487786778889999998888877531348667999999999999
Q gi|254780455|r 88 KKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKL 167 (418)
Q Consensus 88 ~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (418)
+-.+.-.+.+|+++++++||.......|..+||++..+...+|. ..++
T Consensus 62 -----------------~~~dG~~v~~g~~i~~i~G~a~~il~~ER~~LN~L~~lSGIAT~---------------T~~~ 109 (269)
T cd01568 62 -----------------LVKDGDRVEAGQVLLEVEGPARSLLTAERVALNLLQRLSGIATA---------------TRRY 109 (269)
T ss_pred -----------------ECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
T ss_conf -----------------87888873799689999977899999999999999999899999---------------9999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCC----CCCCCCCHHHHHHHHCCC
Q ss_conf 9877767426997599842443479788999999998421212012478899997289----876752048987640012
Q gi|254780455|r 168 WSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKI----NAIGTSAHELPMVAAAIT 243 (418)
Q Consensus 168 ~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi----~~~GTmaHs~v~a~~~~~ 243 (418)
..++ .+..+-=++||..++-. -.-.-.|...||.. | +++|+ -..- -| +-+.++.
T Consensus 110 v~~~------~~~~~~i~~TRKT~Pgl----R~l~k~AV~~GGg~---~----HR~gLsd~iLikd--NH--i~~~g~~- 167 (269)
T cd01568 110 VEAA------RGTKARIADTRKTTPGL----RLLEKYAVRAGGGD---N----HRLGLSDAVLIKD--NH--IAAAGGI- 167 (269)
T ss_pred HHHH------CCCCCEEEECCCCCCCC----HHHHHHHHHHCCCC---C----CCCCCCCEEEEEH--HH--HHHHCCH-
T ss_conf 9961------79982897468778673----69999999963722---3----4788874289805--06--8673899-
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20367865499999999996398-86598634689899999899731002434128888789999999999977988113
Q gi|254780455|r 244 RTDIETQNAPYQMMQQWNRLYDD-NLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQN 322 (418)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~yp~-~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~ 322 (418)
..|+...-+..|. ..-..-+||+. .+ ......+.+.|.+|.-+|.... ++.++++. . |+
T Consensus 168 ----------~~av~~~r~~~~~~~kIeVEv~tl~--ea---~~a~~~g~D~I~LDn~~~~~~~-~~v~~~~~--~-~~- 227 (269)
T cd01568 168 ----------TEAVKRARAAAPFEKKIEVEVETLE--EA---EEALEAGADIIMLDNMSPEELK-EAVKLLKG--L-PR- 227 (269)
T ss_pred ----------HHHHHHHHHHCCCCCEEEEEECCHH--HH---HHHHHCCCCEEEECCCCHHHHH-HHHHHHCC--C-CC-
T ss_conf ----------9999999986899843999949899--99---9999769999998798999999-99998477--9-98-
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 089973898999999999972489737863346
Q gi|254780455|r 323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGT 355 (418)
Q Consensus 323 k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT 355 (418)
..+-+|+|+|++.+.+.-+. | +|...+|.
T Consensus 228 v~ieaSGgI~~~ni~~ya~~--G--vD~Is~g~ 256 (269)
T cd01568 228 VLLEASGGITLENIRAYAET--G--VDVISTGA 256 (269)
T ss_pred EEEEEECCCCHHHHHHHHHC--C--CCEEEECH
T ss_conf 59999899999999999975--9--99999084
No 21
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.59 E-value=0.0081 Score=38.82 Aligned_cols=246 Identities=11% Similarity=0.033 Sum_probs=132.9
Q ss_pred CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99659999996588755440000236999999997169998999999837775555578988999975089984168733
Q gi|254780455|r 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK 113 (418)
Q Consensus 34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~ 113 (418)
++.++...++.|.. .+++|+..+-..++.+- -+++| +-.+.-.+.
T Consensus 25 ~~~~~~a~i~are~-------gVl~G~~~~~~i~~~~~---~~v~~-------------------------~~~dG~~v~ 69 (272)
T cd01573 25 GEQPGKITFRARDP-------GVLCGTEEAARILELLG---LEVDL-------------------------AAASGSRVA 69 (272)
T ss_pred CCCEEEEEEEECCC-------EEEECHHHHHHHHHHHC---CEEEE-------------------------ECCCCCEEC
T ss_conf 99669999996799-------89977999999999849---89999-------------------------948798907
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 99269998548778677888999999888887753134866799999999999998777674269975998424434797
Q gi|254780455|r 114 KGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSL 193 (418)
Q Consensus 114 eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~ 193 (418)
+|+.+++|+||.......|-.+||++..+...+|.+ .++..++.. ...+.++++ ||.-.+-
T Consensus 70 ~g~~i~~i~G~~~~iL~~ER~~LN~Lq~lSGIAT~T---------------~~~v~~~k~--~~~~~~ild--TRKT~Pg 130 (272)
T cd01573 70 AGAVLLEAEGPAAALHLGWKVAQTLLEWASGIATAT---------------AEMVAAARA--VNPDIVVAT--TRKAFPG 130 (272)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH--CCCCEEEEE--CCCCCCC
T ss_conf 998999999778999999999999999987289999---------------999999874--089819975--6776854
Q ss_pred HHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 889999999984212120124788999972898767--520489876400122036786549999999999639886598
Q gi|254780455|r 194 TWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIG--TSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIV 271 (418)
Q Consensus 194 ~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~G--TmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~ 271 (418)
. -.-.-.|...|| -.| +++|+--.- .-.| +.+.+... ...+....-...|...-..
T Consensus 131 l----R~l~K~Av~~GG---g~n----HR~~L~d~ilIKdNH--i~~~g~~~---------~~~~v~~~k~~~~~~kIeV 188 (272)
T cd01573 131 T----RKLALKAILAGG---AVP----HRLGLSETILVFAEH--RAFLGGPE---------PLKALARLRATAPEKKIVV 188 (272)
T ss_pred C----HHHHHHEEEECC---CCC----CCCCCCCCEEECHHH--HHHHCCCH---------HHHHHHHHHHHCCCCEEEE
T ss_conf 1----799986100488---405----666687744463889--98838832---------9999999986299970899
Q ss_pred EECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 63468989999989973100243412888878999999999997798811308997389899999999997248973786
Q gi|254780455|r 272 LPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIF 351 (418)
Q Consensus 272 L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~f 351 (418)
-+||.. .+ ......+.+.|.+|--+| ...+++++++++.. | ...|-+|+|++++.+.+.-+. | +|..
T Consensus 189 Ev~~~~--q~---~~a~~~g~d~I~LDn~s~-~~ik~~v~~~~~~~--~-~v~ieaSGgI~~~ni~~yA~t--G--vD~I 255 (272)
T cd01573 189 EVDSLE--EA---LAAAEAGADILQLDKFSP-EELAELVPKLRSLA--P-PVLLAAAGGINIENAAAYAAA--G--ADIL 255 (272)
T ss_pred EECCHH--HH---HHHHHCCCCEEEECCCCH-HHHHHHHHHHHCCC--C-CEEEEEECCCCHHHHHHHHHC--C--CCEE
T ss_conf 839999--99---999846999999779999-99999999974448--8-769999899999999999973--9--9999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 334643146566666655677732168985
Q gi|254780455|r 352 GWGTNLTNDFDGCTPYQNLQTEKLQIVCKV 381 (418)
Q Consensus 352 GIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl 381 (418)
++..+|. .||+++-.|+
T Consensus 256 -s~~a~~~------------a~~~Disl~i 272 (272)
T cd01573 256 -VTSAPYY------------AKPADIKVKI 272 (272)
T ss_pred -ECCHHHC------------CCHHHEEEEC
T ss_conf -8084327------------7622316759
No 22
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=95.28 E-value=0.26 Score=28.49 Aligned_cols=142 Identities=13% Similarity=0.028 Sum_probs=87.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 97599842443479788999999998421212012478899997289876752048987640012203678654999999
Q gi|254780455|r 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQ 258 (418)
Q Consensus 179 ~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~ 258 (418)
+.++.=++||.-++-.- .-...|...||.. -+++|+.-...+-+..+.+++++. .+.+
T Consensus 14 ~~~~~i~~TRKT~Pg~R----~l~k~Av~~GGg~-------~HR~gL~d~ilikdnHi~~~g~~~-----------~~i~ 71 (169)
T pfam01729 14 GTKVRIADTRKTTPGLR----LLEKYAVLIGGGD-------NHRLGLSDAVLIKDNHIAAAGSIT-----------EAVR 71 (169)
T ss_pred CCCCEEEECCCCCCCCH----HHHHHHHHHCCCC-------CCCCCCCHHEEEHHHHHHHHCCHH-----------HHHH
T ss_conf 89988985678888836----9999999865831-------221688710365477887527999-----------9999
Q ss_pred HHHHHCCCCCEE-EEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 999963988659-8634689899999899731002434128888789999999999977988113089973898999999
Q gi|254780455|r 259 QWNRLYDDNLLI-VLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSII 337 (418)
Q Consensus 259 ~~~~~yp~~~~i-~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~ 337 (418)
.+-+..|...-| .-+||. +.+. .....+.+.|.+|--+| +..+++++.+++.+. + ..|-+|+|++++.+.
T Consensus 72 ~~~~~~~~~~~I~VEv~tl--~e~~---~a~~~~~d~I~LDn~sp-e~l~~~v~~l~~~~~--~-v~iEaSGgI~~~ni~ 142 (169)
T pfam01729 72 RAREVAPFAVKIEVEVENL--EELE---EALEAGADIIMLDNFSP-EEVREAVEELDERAG--R-VLLEVSGGITLDNVL 142 (169)
T ss_pred HHHHHCCCCCEEEEEEEHH--HHHH---HHHHCCCCEEEECCCCH-HHHHHHHHHHHHHCC--C-EEEEECCCCCHHHHH
T ss_conf 9999679997099996019--9899---99846998999779999-999999999997589--6-799961899999999
Q ss_pred HHHHHHCCCCEEEEEECC
Q ss_conf 999972489737863346
Q gi|254780455|r 338 YTYKHFENRVQMIFGWGT 355 (418)
Q Consensus 338 ~l~~~~~~~~~~~fGIGT 355 (418)
+.-+. .+|...+|.
T Consensus 143 ~yA~t----GvD~IS~ga 156 (169)
T pfam01729 143 EYAKT----GVDVISVGA 156 (169)
T ss_pred HHHHC----CCCEEECCH
T ss_conf 99976----999998586
No 23
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.66 E-value=0.38 Score=27.36 Aligned_cols=246 Identities=17% Similarity=0.105 Sum_probs=126.3
Q ss_pred CCCHHHHCCHHHH--HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf 1001244011789--99999999848996599999965887554400002369999999971699989999998377755
Q gi|254780455|r 10 PIISSLLDTDFYK--ILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYG 87 (418)
Q Consensus 10 piI~SlLdTD~Yk--ltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~ 87 (418)
.+|...|.-|.-. +|.. +. .-++.++...+..|.+ .+++|++..-+-++.+- ..-++.|
T Consensus 2 ~~i~~al~ED~~~gDlTt~-~l--~~~~~~~~a~i~ake~-------gv~~G~~~~~~if~~~d-~~~~~~~-------- 62 (268)
T cd01572 2 AIVRLALAEDLGRGDITSE-AI--IPPDARAEARLIAKEE-------GVLAGLPVAEEVFELLD-PGIEVEW-------- 62 (268)
T ss_pred HHHHHHHHCCCCCCCCCCH-HH--CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHHC-CCCEEEE--------
T ss_conf 7899999738999866743-02--7899759999997899-------89987899999999839-9869999--------
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 55578988999975089984168733992699985487786778889999998888877531348667999999999999
Q gi|254780455|r 88 KKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKL 167 (418)
Q Consensus 88 ~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (418)
+-.+.-.+.+|+++++++||-......|-.+||++..+...+| ...++
T Consensus 63 -----------------~~~dG~~v~~g~~i~~i~G~a~~il~~ER~~LN~l~~~SGIAT---------------~T~~~ 110 (268)
T cd01572 63 -----------------LVKDGDRVEPGQVLATVEGPARSLLTAERTALNFLQRLSGIAT---------------LTRRY 110 (268)
T ss_pred -----------------ECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_conf -----------------8588988079989999997589999999999999999999999---------------99999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE----HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 987776742699759984244347978899999999842121201----2478899997289876752048987640012
Q gi|254780455|r 168 WSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFL----GTSNALLAMNYKINAIGTSAHELPMVAAAIT 243 (418)
Q Consensus 168 ~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~----GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~ 243 (418)
..++. ..+.++ .+||.-.+-. -.... .|...||.. |-|...+=+. -| +-+++++
T Consensus 111 v~~~~----~~~~~i--~~TRKT~Pg~-R~l~k---~AV~~GGg~~HR~gLsd~iLikd---------NH--i~~~g~i- 168 (268)
T cd01572 111 VEALA----GTKARI--LDTRKTTPGL-RLLEK---YAVRCGGGDNHRFGLSDAVLIKD---------NH--IAAAGSI- 168 (268)
T ss_pred HHHHC----CCCCEE--EECCCCCCCH-HHHHH---HHHHHCCCCCCCCCCCCEEEEEH---------HH--HHHHCCH-
T ss_conf 99717----999579--7468888560-89999---99997060246788633488824---------27--8763789-
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20367865499999999996398-86598634689899999899731002434128888789999999999977988113
Q gi|254780455|r 244 RTDIETQNAPYQMMQQWNRLYDD-NLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQN 322 (418)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~yp~-~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~ 322 (418)
..+.+..-+..|. ..-..-+||. +.+.. ....+.+.|.+|--.|.. .+++++.+++ .
T Consensus 169 ----------~~av~~~r~~~~~~~~IeVEv~s~--~e~~~---a~~~gadiI~LDn~spe~-~~~~v~~~~~------~ 226 (268)
T cd01572 169 ----------TEAVRRARAAAPFTLKIEVEVETL--EQLKE---ALEAGADIIMLDNMSPEE-LREAVALLKG------R 226 (268)
T ss_pred ----------HHHHHHHHHHCCCCCEEEEEECCH--HHHHH---HHHCCCCEEEECCCCHHH-HHHHHHHHCC------C
T ss_conf ----------999999998679985299994889--99999---997599999977999999-9999998669------5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 08997389899999999997248973786334
Q gi|254780455|r 323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWG 354 (418)
Q Consensus 323 k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIG 354 (418)
..+-+|+|+|++.+.+.-+. | +|...+|
T Consensus 227 v~ieaSGgIn~~ni~~ya~~--G--vD~Is~g 254 (268)
T cd01572 227 VLLEASGGITLENIRAYAET--G--VDYISVG 254 (268)
T ss_pred EEEEEECCCCHHHHHHHHHC--C--CCEEECC
T ss_conf 69999899989999999975--9--9999838
No 24
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.73 E-value=0.58 Score=26.11 Aligned_cols=258 Identities=10% Similarity=0.018 Sum_probs=129.0
Q ss_pred CCHHHHCCHHHH--HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 001244011789--999999998489965999999658875544000023699999999716999899999983777555
Q gi|254780455|r 11 IISSLLDTDFYK--ILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK 88 (418)
Q Consensus 11 iI~SlLdTD~Yk--ltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~ 88 (418)
.|+..|.-|+.. +|-. . -.++..+...++.|.+ .|++|+...-.-++.+
T Consensus 22 ~I~~aL~ED~g~gDiTs~-~---i~~~~~~~a~i~ake~-------gVlaG~~~~~~vf~~~------------------ 72 (288)
T PRK06978 22 NVADAIAEDVGSGDQTGR-L---VPAGEPRRARVIVREE-------AVLCGVPWFDAVMRAV------------------ 72 (288)
T ss_pred HHHHHHHCCCCCCCCCCC-C---CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHH------------------
T ss_conf 999999708999964001-2---4899879999998799-------8997799999999985------------------
Q ss_pred CCCCCHHHHHHHHHCCC---CCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 55789889999750899---841687339926999854877867788899999988888775313486679999999999
Q gi|254780455|r 89 KQLFEPKFLSWLSDFQL---PEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKK 165 (418)
Q Consensus 89 ~~~~~~~fl~~L~~~~f---~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~ 165 (418)
++ +.++ -.+.-.+.+|+.+++++||-.....-|-..||++..+...+|. ..
T Consensus 73 ----d~-------~i~v~~~~~DG~~v~~G~~i~~i~G~a~~iL~~ERvaLN~Lq~lSGIAT~---------------T~ 126 (288)
T PRK06978 73 ----DP-------SIEVQWRYREGDRMTADSTVCELEGPARALLTAERNALNFLQLLSGVATA---------------TR 126 (288)
T ss_pred ----CC-------CEEEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
T ss_conf ----99-------72999983889891799999999988799999999999999999899999---------------99
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE----HHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf 99987776742699759984244347978899999999842121201----24788999972898767520489876400
Q gi|254780455|r 166 KLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFL----GTSNALLAMNYKINAIGTSAHELPMVAAA 241 (418)
Q Consensus 166 ~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~----GTSNv~aa~~~gi~~~GTmaHs~v~a~~~ 241 (418)
+...++ ...+.++ ..||--.+-. . .-.-.|...||.. |-|...+=+. -| +.+.+.
T Consensus 127 ~~v~~i----~~~~~~i--~dTRKT~PGl--R--~leKyAV~~GGG~nHR~gL~D~iLIKd---------NH--i~~~g~ 185 (288)
T PRK06978 127 RYVDRI----AGTRARI--LDTRKTLPGL--R--LAQKYAVRVGGGENQRLALYDGILIKE---------NH--IAAAGG 185 (288)
T ss_pred HHHHHH----CCCCCEE--EECCCCCCCC--H--HHHHHHHHHCCEECCCCCCHHHHEEEH---------HH--HHHCCC
T ss_conf 999985----1569679--8627778880--6--999999996591034688412410303---------26--876388
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12203678654999999999963988659863468989999989973100243412888878999999999997798811
Q gi|254780455|r 242 ITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQ 321 (418)
Q Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~ 321 (418)
+. .|...-.+..+...-..=+||.+ . .......+.+.|.+|--+|...- ++.+... ++
T Consensus 186 i~-----------~av~~~~~~~~~~~IeVEve~l~--q---~~~al~~g~d~ImLDNms~~~~~-~av~~~~-----~~ 243 (288)
T PRK06978 186 VG-----------EALDAAFALNAGVPVQIEVETLA--Q---LETALAHGAQSVLLDNFTLDMMR-EAVRVTA-----GR 243 (288)
T ss_pred HH-----------HHHHHHHHHCCCCCEEEEECCHH--H---HHHHHHCCCCEEEECCCCHHHHH-HHHHHHC-----CC
T ss_conf 99-----------99999998189986599964477--7---89998489999995799999999-9999647-----96
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 30899738989999999999724897378633464314656666665567773216898575
Q gi|254780455|r 322 NKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTK 383 (418)
Q Consensus 322 ~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve 383 (418)
..+-+|+|++.+.+.+.-+. | .|.--+|- || .+.+++++-++++|
T Consensus 244 -~~lEaSGgI~~~ni~~yA~t--G--VD~IS~Ga-LT-----------hsa~~lD~Sl~ive 288 (288)
T PRK06978 244 -AVLEVSGGVNFDTVRAFAET--G--VDRISIGA-LT-----------KDVRATDYSMRIVE 288 (288)
T ss_pred -EEEEEECCCCHHHHHHHHHC--C--CCEEECCH-HH-----------CCCCCCCCEEEEEC
T ss_conf -79999899999999999966--9--99998885-43-----------69986253268519
No 25
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.39 E-value=0.9 Score=24.80 Aligned_cols=204 Identities=13% Similarity=0.059 Sum_probs=105.9
Q ss_pred CEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 16873399269998548778677888999999888887753134866799999999999998777674269975998424
Q gi|254780455|r 108 YDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGT 187 (418)
Q Consensus 108 ~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~ 187 (418)
+.-.+.+|+.+++++||-......|-.+||++..+...+|. ..++.+++. ..+.+++ +|
T Consensus 77 dG~~v~~g~~i~~i~G~a~~il~~ER~~LN~l~~lSGIAT~---------------T~~~v~~~~----~~~~~i~--~T 135 (285)
T PRK07428 77 EGEACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATL---------------TRQYVEKIA----DLPTQLV--DT 135 (285)
T ss_pred CCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHC----CCCCEEE--EC
T ss_conf 89853489789999987899999999999999999999999---------------999999616----7898898--34
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCC----CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 434797889999999984212120124788999972898----7675204898764001220367865499999999996
Q gi|254780455|r 188 RRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKIN----AIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRL 263 (418)
Q Consensus 188 RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~----~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~ 263 (418)
|--.+-. -. -...|...||- -| +++|+. ..-- | +-..+++. .|+....+.
T Consensus 136 RKT~PGl-R~---l~k~AV~~GGg---~~----HR~gLsd~iLIkdN--H--i~~~g~i~-----------~ai~~~r~~ 189 (285)
T PRK07428 136 RKTTPGL-RL---LEKYATRVGGA---IN----HRMGLDDAVMIKDN--H--IQAAGGIG-----------EAITRIRQQ 189 (285)
T ss_pred CCCCCCC-HH---HHHHHHHHCCC---CC----CCCCCCCCEEEEHH--H--HHHCCCHH-----------HHHHHHHHH
T ss_conf 7778773-49---99999996671---56----47999750567774--7--52028999-----------999999974
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 39886598634689899999899731002434128888789999999999977988113089973898999999999972
Q gi|254780455|r 264 YDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418)
Q Consensus 264 yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418)
.|...-| -+.+=+.+.+ ......+.+.|-+|--+|.. .+++++.+++.+ |+ ..+-+|+|+|++.+.+.-+.
T Consensus 190 ~~~~~~I-eVEv~~l~q~---~~a~~~g~DiI~LDnm~~~~-~~~~v~~l~~~~--~~-v~iEaSGgIn~~ni~~yA~t- 260 (285)
T PRK07428 190 IPYPLTI-EVETETLEQV---QEALEYGADIIMLDNMPVDQ-MQQAVQLIRQQN--PR-VKIEASGNITLETIRAVAET- 260 (285)
T ss_pred CCCCCEE-EEEECCHHHH---HHHHHCCCCEEEECCCCHHH-HHHHHHHHHHHC--CC-EEEEEECCCCHHHHHHHHHC-
T ss_conf 8998269-9996989999---99996699999987999999-999999987308--98-89999899999999999974-
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 489737863346431465666666556777321689857
Q gi|254780455|r 344 ENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVT 382 (418)
Q Consensus 344 ~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlv 382 (418)
| +|..-+|- +| .+.|++++-.++.
T Consensus 261 -G--VD~Is~ga-lt-----------~~~~~~Disl~i~ 284 (285)
T PRK07428 261 -G--VDYISTSA-PI-----------TRSPWLDLSMRIT 284 (285)
T ss_pred -C--CCEEECCH-HH-----------CCCCCCCEEEEEE
T ss_conf -9--99998383-10-----------6997521388987
No 26
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.10 E-value=1.5 Score=23.29 Aligned_cols=262 Identities=12% Similarity=0.051 Sum_probs=135.3
Q ss_pred CCCCHHHHCCHHHH--HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf 71001244011789--9999999984899659999996588755440000236999999997169998999999837775
Q gi|254780455|r 9 DPIISSLLDTDFYK--ILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFY 86 (418)
Q Consensus 9 ~piI~SlLdTD~Yk--ltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~ 86 (418)
+..|+..|.-|.-. +|-. . ..++..++..++.|.+ ++++|+...-+.++.+-- +-+++|
T Consensus 10 ~~~i~~aL~ED~~~gDlTt~-~---l~~~~~~~a~iiare~-------gvl~G~~~~~~if~~l~~-~~~~~~------- 70 (277)
T PRK05742 10 EANVRRALAEDIGSGDITAQ-L---IPAERLAKATIITREA-------AVIAGTAWVDAVFRQLDP-RVAVHW------- 70 (277)
T ss_pred HHHHHHHHHHCCCCCCCCHH-H---CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHHCC-CCEEEE-------
T ss_conf 99999999708999975100-0---4899779999998899-------799879999999999699-709999-------
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 55557898899997508998416873399269998548778677888999999888887753134866799999999999
Q gi|254780455|r 87 GKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKK 166 (418)
Q Consensus 87 ~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (418)
.-.+.-.+.+|+++++++||.......|-.+||++..+...+|.. .+
T Consensus 71 ------------------~~~dG~~v~~g~~i~~i~G~a~~il~~ERvaLN~L~~lSGIAT~T---------------~~ 117 (277)
T PRK05742 71 ------------------QVADGDRVEANQVLFHLEGPARSLLTGERSALNFLQLLSGVATRA---------------RH 117 (277)
T ss_pred ------------------EECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
T ss_conf ------------------838898705886899999778999999999999999999999999---------------99
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCC
Q ss_conf 9987776742699759984244347978899999999842121201247889999728987--67520489876400122
Q gi|254780455|r 167 LWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINA--IGTSAHELPMVAAAITR 244 (418)
Q Consensus 167 ~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~--~GTmaHs~v~a~~~~~~ 244 (418)
+..++. ..+.++ .+||--.+-. . .-...|...||.. | +++|+.- .-==.| +.+.+..
T Consensus 118 ~v~~~~----~~~~~i--~~TRKT~PGl--R--~lek~AV~~GGg~---~----HR~gLsd~iLiKdNH--i~~~g~i-- 176 (277)
T PRK05742 118 YADLVA----GTQVKL--LDTRKTLPGL--R--LAQKYAVTCGGCH---N----HRIGLYDAFLIKENH--IAACGGI-- 176 (277)
T ss_pred HHHHHC----CCCEEE--EECCCCCCCH--H--HHHHHHHHHCCCC---C----CCCCCCCEEEEECCH--HHHCCCH--
T ss_conf 999834----887199--8137878527--9--9999999866840---5----458876358974546--5550679--
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-HHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 0367865499999999996398865986346898999998997-310024341288887899999999999779881130
Q gi|254780455|r 245 TDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPS-WMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNK 323 (418)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~-~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k 323 (418)
..+....-+..|...-..-+||. +.+.+ ...+.+.|.+|--.|..+-+ +++.. + ++ .
T Consensus 177 ---------~~~v~~~~~~~~~~kIeVEv~tl------~q~~~a~~~gaDiI~LDnms~~~lk~-av~~~---~--~~-~ 234 (277)
T PRK05742 177 ---------AQAVAAAHRIAPGKPVEVEVESL------DELRQALAAGADIVMLDELSLDDMRE-AVRLT---A--GR-A 234 (277)
T ss_pred ---------HHHHHHHHHHCCCCCEEEEECCH------HHHHHHHHCCCCEEEECCCCHHHHHH-HHHHH---C--CC-E
T ss_conf ---------99999999848997269996779------99999874699899986999999999-99974---7--97-4
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 8997389899999999997248973786334643146566666655677732168985
Q gi|254780455|r 324 FLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV 381 (418)
Q Consensus 324 ~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl 381 (418)
.+-+|+|+|.+.+.+.-+. | +|...+| .|| .+.+++++-+++
T Consensus 235 ~iEaSGGI~~~ni~~yA~t--G--vD~IS~g-alt-----------~~a~~lD~sl~~ 276 (277)
T PRK05742 235 KLEASGGINETTLRVIAET--G--VDYISIG-AMT-----------KDVKAVDLSMRL 276 (277)
T ss_pred EEEEECCCCHHHHHHHHHC--C--CCEEECC-HHH-----------CCCCCEEEEEEC
T ss_conf 8999889999999999974--9--9999888-010-----------699650157851
No 27
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=80.67 E-value=4.3 Score=20.15 Aligned_cols=232 Identities=18% Similarity=0.135 Sum_probs=125.5
Q ss_pred CCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH---HCCC---CCC
Q ss_conf 9659999996588755440000236999999997169998999999837775555578988999975---0899---841
Q gi|254780455|r 35 DIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLS---DFQL---PEY 108 (418)
Q Consensus 35 ~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~---~~~f---~~~ 108 (418)
..++.-.+.+|.+ .|.+|++-.-..+ ++|. ++++ -.+
T Consensus 26 ~~~a~a~~~aKe~-------GV~AG~~~a~~~F------------------------------~~l~~~v~~~~~~~~~D 68 (276)
T TIGR00078 26 STRAKASLVAKEN-------GVLAGLEVAERVF------------------------------ELLDDEVGVQVEWLVKD 68 (276)
T ss_pred CCCEEEEEEECCC-------CEEECHHHHHHHH------------------------------HHHCCCCCEEEEEECCC
T ss_conf 8845899998578-------6043727999999------------------------------97488631798410378
Q ss_pred EEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 68733992699985487786778889999998888877531348667999999999999987776742699759984244
Q gi|254780455|r 109 DLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTR 188 (418)
Q Consensus 109 ~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~R 188 (418)
.-.+.+|+.+++|+||....-+-|=-.||+|..++.++| ..+++.++++. .+..+-=+|||
T Consensus 69 G~~~~~G~~v~~~~G~a~~lL~~ERtaLN~l~~lSGIAT---------------~Tr~~v~~~~~----~~~~~~i~dTR 129 (276)
T TIGR00078 69 GDEVEAGEVVAEVEGPARSLLTAERTALNFLQRLSGIAT---------------ATRKYVEALRG----TNPKVRIADTR 129 (276)
T ss_pred CCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHC----CCCCEEEEEEE
T ss_conf 877447738999974610146888999999985218999---------------99999999845----89933899852
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHH------------HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 34797889999999984212120124788999972898767520489------------876400122036786549999
Q gi|254780455|r 189 RRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHEL------------PMVAAAITRTDIETQNAPYQM 256 (418)
Q Consensus 189 R~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~------------v~a~~~~~~~~~~~~~~~~~a 256 (418)
--.+ || -.--||-+..-|=+.|=| |...|++. +|
T Consensus 130 KTTP-----------------GL------R~~EKyAVr~GGG~nHR~~LsDavmiKDNHi~~~Gs~~-----------~A 175 (276)
T TIGR00078 130 KTTP-----------------GL------RLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIE-----------KA 175 (276)
T ss_pred CCCC-----------------CC------CCEEEEEEEECCCCCCCCCCCCEEEEEECEEECCCCHH-----------HH
T ss_conf 5787-----------------43------01023135535885786888773897502066068989-----------99
Q ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
Q ss_conf 99999963988659863468989999989-97310024341288887899999999999779881130899738989999
Q gi|254780455|r 257 MQQWNRLYDDNLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDS 335 (418)
Q Consensus 257 ~~~~~~~yp~~~~i~L~DTy~~~~~l~~~-~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~ 335 (418)
.+.--+..|.-.-| =|=+=+ +..+ +...++-+-|=||--+|.+ .+++.+.++..+ | +..+=+|+|++.+.
T Consensus 176 v~~aR~~~~~~~ki-EVEVen----lE~a~eA~~AGADiImLDNm~p~~-~~~av~~~~~~~--p-~~~~EaSGGitl~n 246 (276)
T TIGR00078 176 VKRARAALPFAKKI-EVEVEN----LEEAEEAAEAGADIIMLDNMKPEE-IKEAVELLKGRN--P-NVLVEASGGITLDN 246 (276)
T ss_pred HHHHHHHCCCCCEE-EEEECC----HHHHHHHHHCCCCEEECCCCCHHH-HHHHHHHHHHCC--C-EEEEEEECCCCHHH
T ss_conf 99999848998079-986289----899999997099599806989479-999999997029--9-08999836998789
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 9999997248973786334643146566666655677732168985
Q gi|254780455|r 336 IIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV 381 (418)
Q Consensus 336 i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl 381 (418)
+....+ -.+|.-=+| .| -.+.|.|++-.|+
T Consensus 247 ~~~ya~----~gVD~IS~G-~l-----------Ths~~~LD~SL~~ 276 (276)
T TIGR00078 247 IEEYAE----TGVDVISSG-AL-----------THSVPALDLSLKI 276 (276)
T ss_pred HHHHHH----CCCCEEECC-CH-----------HHEEEEEEEEECC
T ss_conf 999840----897588327-41-----------1200678876339
No 28
>KOG0425 consensus
Probab=77.80 E-value=1.4 Score=23.58 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=37.5
Q ss_pred CCCCCCEE---EECCCCEEEEEEC--------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 89984168---7339926999854--------------877867788899999988888775313486679
Q gi|254780455|r 103 FQLPEYDL---SHKKGQYVLNFHG--------------LWKDVTLWEIPSLIIISTLYSRITVRSMNPFSV 156 (418)
Q Consensus 103 ~~f~~~~~---~~~eg~~~i~ieG--------------p~~~~~l~EtplL~iine~~~~~~~~~~~~~~~ 156 (418)
+||..++| ..++|.+.|.|=- .|.-++-+||-||+||+-+..+.+....+..+.
T Consensus 72 ~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa 142 (171)
T KOG0425 72 FRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAA 142 (171)
T ss_pred EEEEHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 56133213777278898889961589888666777343057764446768889988718998886244799
No 29
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase; InterPro: IPR012768 Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (3.2.1.141 from EC). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0005992 trehalose biosynthetic process.
Probab=77.56 E-value=4.4 Score=20.08 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=38.7
Q ss_pred HHHHHHHHHCC--CCEEECCC----CC------HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 99989973100--24341288----88------789999999999977988113089973898999999
Q gi|254780455|r 281 FLEHAPSWMTQ--WKGFRHDS----AS------PIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSII 337 (418)
Q Consensus 281 ~l~~~~~~~~~--~~GVR~DS----GD------~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~ 337 (418)
||.|+.-++.. ++|.|||= .| |.+++.++++...+.|. .+.+|+-|+||--+++
T Consensus 236 ~i~NAlyWL~ey~~DGLRLDAvhai~D~~a~H~L~ela~~v~~~~~~~gR---~~~LiaEsdlN~p~l~ 301 (564)
T TIGR02402 236 IIDNALYWLREYHFDGLRLDAVHAIADTSAVHILEELAEAVRELAAELGR---PVHLIAESDLNDPSLL 301 (564)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC---EEEEEEECCCCCCCCC
T ss_conf 99989999976387864456886405888864789999999999605898---0899966344785304
No 30
>pfam02749 QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The N-terminal domain has an alpha/beta hammerhead fold.
Probab=76.79 E-value=4.4 Score=20.09 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=49.3
Q ss_pred CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99659999996588755440000236999999997169998999999837775555578988999975089984168733
Q gi|254780455|r 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK 113 (418)
Q Consensus 34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~ 113 (418)
++.+++..+..|.+ .+++|+...-..++.+.+ ++++ +-.+.-.+.
T Consensus 14 ~~~~~~a~i~are~-------gv~aG~~~~~~i~~~~~~---~v~~-------------------------~~~dG~~v~ 58 (88)
T pfam02749 14 PDKRAKAVIIAKEE-------GVVAGLEEAAEVFELLGL---EVEW-------------------------LVKDGERVE 58 (88)
T ss_pred CCCEEEEEEEECCC-------EEEECHHHHHHHHHHHCC---EEEE-------------------------ECCCCCEEC
T ss_conf 99749999997898-------699809999999998094---9999-------------------------968899917
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 9926999854877867788899999988
Q gi|254780455|r 114 KGQYVLNFHGLWKDVTLWEIPSLIIIST 141 (418)
Q Consensus 114 eg~~~i~ieGp~~~~~l~EtplL~iine 141 (418)
+|+++++++||.......|-.+||++..
T Consensus 59 ~g~~i~~i~G~~~~il~~ER~~LN~l~~ 86 (88)
T pfam02749 59 AGDVILEIEGPARALLTAERVALNFLQR 86 (88)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 9999999998889999999999999986
No 31
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=72.44 E-value=6.3 Score=19.02 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 999999999977988113089973898999999999972489
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENR 346 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~ 346 (418)
-++|+++||++.||+... .-+..++++.+.+..+.....+.
T Consensus 12 TcrKA~kWL~~~~I~y~~-~di~k~p~s~~el~~~L~~~~~g 52 (132)
T PRK13344 12 SCKKAKTWLNAHQLAYKE-QNLGKEPLTKEEILAILSKTENG 52 (132)
T ss_pred HHHHHHHHHHHCCCCEEE-EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 789999999987996388-54122796999999999981558
No 32
>PRK03103 DNA polymerase IV; Reviewed
Probab=72.24 E-value=7.1 Score=18.63 Aligned_cols=30 Identities=7% Similarity=0.022 Sum_probs=15.5
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCEEEEEECCH
Q ss_conf 88999975089984168733992699985487
Q gi|254780455|r 94 PKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLW 125 (418)
Q Consensus 94 ~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~ 125 (418)
....+.|+. |++.+-...=.|-.+.++|..
T Consensus 87 ~~v~~il~~--~~p~ve~~SIDE~fldlt~~~ 116 (410)
T PRK03103 87 VQITEILER--YTDLVEPYSIDEQFMDVTGSQ 116 (410)
T ss_pred HHHHHHHHH--CCCCEEECCCCCEEEECCCHH
T ss_conf 999999985--795311245870378756603
No 33
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=70.15 E-value=2.2 Score=22.19 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEE-EECCCC-CCCCCC
Q ss_conf 389899999999997248973786-334643-146566
Q gi|254780455|r 328 SDNLDVDSIIYTYKHFENRVQMIF-GWGTNL-TNDFDG 363 (418)
Q Consensus 328 Sd~Ld~e~i~~l~~~~~~~~~~~f-GIGT~L-t~d~~~ 363 (418)
-+=|-+..+..|....+. .. +|-=|+ |+|.-|
T Consensus 732 AGlLKP~AAk~L~~ALre----~~PD~PiH~HTHDtSG 765 (1169)
T TIGR01235 732 AGLLKPAAAKLLIKALRE----KIPDLPIHLHTHDTSG 765 (1169)
T ss_pred HCCCHHHHHHHHHHHHHH----CCCCCCEEEECCCCHH
T ss_conf 124428999999999973----2799856862666126
No 34
>PRK12559 transcriptional regulator Spx; Provisional
Probab=69.38 E-value=5.2 Score=19.59 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 9999999999779881130899738989999999999724
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE 344 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~ 344 (418)
-++|+++||++.|++... .-+.++.++.+.+..+.+...
T Consensus 12 tcRKA~~wL~~~~I~y~~-~d~~~~~~t~~el~~ll~~~~ 50 (131)
T PRK12559 12 SCRKAKAWLEENQIDYTE-KNIVSNSMTVDELKSILRLTE 50 (131)
T ss_pred HHHHHHHHHHHCCCCCEE-ECCCCCCCCHHHHHHHHHHHC
T ss_conf 799999999987998187-210028989999999999836
No 35
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.60 E-value=8.9 Score=17.97 Aligned_cols=235 Identities=16% Similarity=0.079 Sum_probs=117.5
Q ss_pred CCCHHHHCCHHH---HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf 100124401178---99999999984899659999996588755440000236999999997169998999999837775
Q gi|254780455|r 10 PIISSLLDTDFY---KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFY 86 (418)
Q Consensus 10 piI~SlLdTD~Y---kltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~ 86 (418)
++|+.-|.-|+. -+|.. +.. -++..++..+..|.. .+++|+...-.-++.+
T Consensus 11 ~~i~~aL~ED~g~~gDlTt~-~l~--~~~~~~~a~i~ake~-------gv~~G~~~~~~vf~~~---------------- 64 (281)
T PRK06106 11 PLVRAALLEDLGRAGDITTD-AIV--PADHRATVVLVARQP-------GVIAGLDLARLAFRLV---------------- 64 (281)
T ss_pred HHHHHHHHHHCCCCCCCCCH-HHC--CCCCEEEEEEEECCC-------EEEEEHHHHHHHHHHH----------------
T ss_conf 99999998258899873713-008--899759999997899-------7998189999999970----------------
Q ss_pred CCCCCCCHHHHHHHHHCC---CCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 555578988999975089---98416873399269998548778677888999999888887753134866799999999
Q gi|254780455|r 87 GKKQLFEPKFLSWLSDFQ---LPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQA 163 (418)
Q Consensus 87 ~~~~~~~~~fl~~L~~~~---f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~ 163 (418)
++ +.. +-.+.-.+.+|+.+++++||-.....-|-..||++..+...+| .
T Consensus 65 ------d~-------~i~~~~~~~DG~~v~~g~~i~~i~G~a~~iL~~ER~aLN~lq~lSGIAT---------------~ 116 (281)
T PRK06106 65 ------DP-------EIEMRRHLPDGAAVAPGDVIATISGPARGLLTAERTALNFLCHLSGIAT---------------A 116 (281)
T ss_pred ------CC-------CEEEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------H
T ss_conf ------89-------6599998588988138986899994779999989999999999999999---------------9
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCC----CCCCCCHHHHHHH
Q ss_conf 999998777674269975998424434797889999999984212120124788999972898----7675204898764
Q gi|254780455|r 164 KKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKIN----AIGTSAHELPMVA 239 (418)
Q Consensus 164 ~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~----~~GTmaHs~v~a~ 239 (418)
..+..+++. ..+.+++ .||--.+-. -...- .|...||.. | +++|+- ..- -| +-+.
T Consensus 117 T~~~v~~~~----~~~~~i~--dTRKT~PGl-R~leK---yAV~~GGg~---n----HR~gL~d~iLIKd--NH--i~~~ 175 (281)
T PRK06106 117 TASIVAAIA----GTKAKIV--CTRKTTPGL-RALEK---YAVRAGGGS---N----HRFGLDDAVLIKD--NH--IAIA 175 (281)
T ss_pred HHHHHHHHC----CCCCEEE--ECCCCCCCC-HHHHH---HHHHHCCEE---E----CCCCCCCCEEEEH--HH--HHHH
T ss_conf 999999843----4699898--778788753-59999---999967985---1----0588875377778--79--8743
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 0012203678654999999999963988659-863468989999989973100243412888878999999999997798
Q gi|254780455|r 240 AAITRTDIETQNAPYQMMQQWNRLYDDNLLI-VLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNC 318 (418)
Q Consensus 240 ~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i-~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gi 318 (418)
++. ..|....-+..|...-| .=+||. +.+ ......+.+.|-+|--+|.... ++++..+.
T Consensus 176 g~i-----------~~av~~~r~~~~~~~kIeVEv~sl--~q~---~~al~~g~d~ImLDNmsp~~~~-~av~~~~~--- 235 (281)
T PRK06106 176 GGV-----------REAIRRARAGVGHLVKIEVEVDTL--EQL---EEALELGVDAVLLDNMSPDTLR-EAVAIVAG--- 235 (281)
T ss_pred CCH-----------HHHHHHHHHHCCCCCEEEEEECCH--HHH---HHHHHCCCCEEEECCCCHHHHH-HHHHHHCC---
T ss_conf 889-----------999999997579972499996999--999---9997279989998799999999-99998568---
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 811308997389899999999997
Q gi|254780455|r 319 NPQNKFLVFSDNLDVDSIIYTYKH 342 (418)
Q Consensus 319 dp~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418)
+ ..+-+|+|++++.+.+.-+.
T Consensus 236 --~-~~~EaSGgI~~~ni~~yA~t 256 (281)
T PRK06106 236 --R-AITEASGRITPETAPAIAAS 256 (281)
T ss_pred --C-EEEEEECCCCHHHHHHHHHC
T ss_conf --4-68999789999999999973
No 36
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.39 E-value=9 Score=17.94 Aligned_cols=243 Identities=16% Similarity=0.074 Sum_probs=122.0
Q ss_pred CCCCHHHHCCHH-H--HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 710012440117-8--9999999998489965999999658875544000023699999999716999899999983777
Q gi|254780455|r 9 DPIISSLLDTDF-Y--KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF 85 (418)
Q Consensus 9 ~piI~SlLdTD~-Y--kltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~ 85 (418)
+++|+..|.-|. | -+|.. +.. -++..+...+..|.+ .+++|++..-.-++.+ ..
T Consensus 15 ~~~I~~aL~ED~~~g~DlTt~-~li--~~~~~~~a~i~ake~-------gvl~G~~~a~~vf~~l-------------~~ 71 (288)
T PRK07896 15 RAVIARALDEDLRYGPDVTTV-ATV--PADAVATASMVTREA-------GVVAGLDVALLVLDEV-------------LG 71 (288)
T ss_pred HHHHHHHHHHCCCCCCCCCCH-HHC--CCCCEEEEEEEECCC-------EEEECHHHHHHHHHHH-------------CC
T ss_conf 999999998209999883657-348--888759999996899-------7997289999999984-------------78
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 55555789889999750899841687339926999854877867788899999988888775313486679999999999
Q gi|254780455|r 86 YGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKK 165 (418)
Q Consensus 86 ~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~ 165 (418)
++. ++-..+-.+.-.+.+|+.+++++||-.....-|=..||++..+...+| ...
T Consensus 72 -------~~~----~~v~~~~~DG~~v~~G~~i~~i~G~a~~iL~~ERvaLN~Lq~lSGIAT---------------~T~ 125 (288)
T PRK07896 72 -------TDG----YRVLDRVEDGARVPPGQALLTVTAPTRGLLTAERTMLNLLCHLSGIAT---------------ATA 125 (288)
T ss_pred -------CCC----EEEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
T ss_conf -------998----499998688989079989999996789999999999999999989999---------------999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEHHHHHHHHHHCCC----CCCCCCCHHHHHHHH
Q ss_conf 999877767426997599842443479788999999998421-212012478899997289----876752048987640
Q gi|254780455|r 166 KLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGI-KDSFLGTSNALLAMNYKI----NAIGTSAHELPMVAA 240 (418)
Q Consensus 166 ~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~-~~gf~GTSNv~aa~~~gi----~~~GTmaHs~v~a~~ 240 (418)
++..++. ..+.++. .||--.+-. . .-.++|. .|| -.| +++|+ -+.- -| +.+.+
T Consensus 126 ~~v~~~~----~~~~~i~--dTRKT~PGl--R---~leKyAV~~GG---G~n----HR~gL~D~iLIKd--NH--i~~~g 183 (288)
T PRK07896 126 AWVDAVA----GTGAKIR--DTRKTLPGL--R---ALQKYAVRCGG---GVN----HRMGLGDAALIKD--NH--VAAAG 183 (288)
T ss_pred HHHHHHC----CCCCEEE--CCCCCCCCH--H---HHHHHHHHHCC---CCC----CCCCCCCEEEEEH--HH--HHHCC
T ss_conf 9999835----8897795--067789865--7---99999999779---355----5688754289862--14--65308
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 01220367865499999999996398865986346898999998997310024341288887899999999999779881
Q gi|254780455|r 241 AITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNP 320 (418)
Q Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp 320 (418)
++ ..|++..-+..|...-..=+||. +.+ ......+.+.|=+|--.|... +++.+..+... |
T Consensus 184 ~i-----------~~ai~~~r~~~~~~kIeVEv~sl--~q~---~ea~~~gaDiImLDNms~e~~-~~av~~~~~~~--~ 244 (288)
T PRK07896 184 SV-----------VAALRAVRAAAPDLPCEVEVDSL--EQL---DEVLAEGAELILLDNFPVWQT-QEAVQRRDARA--P 244 (288)
T ss_pred CH-----------HHHHHHHHHHCCCCEEEEEECCH--HHH---HHHHHCCCCEEEECCCCHHHH-HHHHHHHHCCC--C
T ss_conf 69-----------99999999858996199997979--999---998746999999779999999-99999983769--8
Q ss_pred CCEEEEECCCCCHHHHHHHHHH
Q ss_conf 1308997389899999999997
Q gi|254780455|r 321 QNKFLVFSDNLDVDSIIYTYKH 342 (418)
Q Consensus 321 ~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418)
...+-+|+|+|.+.+.+.-+.
T Consensus 245 -~v~lEaSGgI~~~ni~~yA~t 265 (288)
T PRK07896 245 -TVLLESSGGLTLDTAAAYAAT 265 (288)
T ss_pred -CEEEEEECCCCHHHHHHHHHC
T ss_conf -748999889999999999965
No 37
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed
Probab=66.77 E-value=9.2 Score=17.86 Aligned_cols=13 Identities=15% Similarity=-0.071 Sum_probs=7.1
Q ss_pred HHCCCCCCCCCCH
Q ss_conf 9728987675204
Q gi|254780455|r 221 MNYKINAIGTSAH 233 (418)
Q Consensus 221 ~~~gi~~~GTmaH 233 (418)
..+||.-+|..+|
T Consensus 196 ~~~GI~Ti~dLa~ 208 (422)
T PRK03609 196 NAMGIKTALDLAD 208 (422)
T ss_pred HHCCCCHHHHHHH
T ss_conf 9878810899872
No 38
>TIGR01485 SPP_plant-cyano sucrose phosphatase; InterPro: IPR012847 This entry describes the sucrose phosphate phosphohydrolase from plants and cyanobacteria (SPP). However, a closely related group of sequences from bacteria and archaea may prove to catalyze the same reaction. SPP is a member of the Class IIB subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain, which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain..
Probab=65.74 E-value=4.6 Score=19.96 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=28.4
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCH
Q ss_conf 3412888878999999999997798811308997389899
Q gi|254780455|r 294 GFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDV 333 (418)
Q Consensus 294 GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~ 333 (418)
.-=+|--+-..-.+..-++|++.|+|. +||||+|.|.
T Consensus 126 SFFl~~~~~~~V~~~L~~~L~~~g~~v---k~iYSsG~dl 162 (257)
T TIGR01485 126 SFFLDKEAAAEVIKQLEEELKKSGLDV---KLIYSSGKDL 162 (257)
T ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCE---EEEEECCEEE
T ss_conf 354075654689998998887428975---8997588237
No 39
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=62.11 E-value=11 Score=17.29 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=47.1
Q ss_pred CCCCCEEEEECCCCH---------HHHHHHHHHHH-CCCCEEECCCCCH--HHHHHHHHHHHHHCCCCCCCEEEEE--CC
Q ss_conf 398865986346898---------99999899731-0024341288887--8999999999997798811308997--38
Q gi|254780455|r 264 YDDNLLIVLPDSFGT---------DFFLEHAPSWM-TQWKGFRHDSASP--IEGGEKIIAWWKKMNCNPQNKFLVF--SD 329 (418)
Q Consensus 264 yp~~~~i~L~DTy~~---------~~~l~~~~~~~-~~~~GVR~DSGD~--~~~~~k~~~~l~~~Gidp~~k~iv~--Sd 329 (418)
.|++.-+.++||.|. ++|-....+.. +...=.=+|..|| .....-+.+.++++|.......+|+ .|
T Consensus 233 l~~~~~~ll~DTVGFI~~LP~~Li~aF~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD 312 (351)
T TIGR03156 233 LPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKID 312 (351)
T ss_pred CCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHH
T ss_conf 79997699981500563088679999999999998598999980588847899999999999976999998899996701
Q ss_pred CCCHHHHHHHHHHHCC
Q ss_conf 9899999999997248
Q gi|254780455|r 330 NLDVDSIIYTYKHFEN 345 (418)
Q Consensus 330 ~Ld~e~i~~l~~~~~~ 345 (418)
-++++.+..+...+.+
T Consensus 313 ~~~~~~~~~~~~~~~~ 328 (351)
T TIGR03156 313 LLDEPRIERLEEGYPE 328 (351)
T ss_pred CCCHHHHHHHHHCCCC
T ss_conf 5895778998737998
No 40
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=60.27 E-value=6.8 Score=18.79 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 1201247889999728987675204898764001220367865499999999996398865986346898
Q gi|254780455|r 209 DSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT 278 (418)
Q Consensus 209 ~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~ 278 (418)
+.|.|..-+..+..-|--...-..|-|=|.+. .+||.+- -+-..++-| +-+.|.++||-|-
T Consensus 102 ar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~P------eGyRKAl--Rlm~~AekF-~lPiitfIDT~GA 162 (317)
T COG0825 102 ARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRP------EGYRKAL--RLMKLAEKF-GLPIITFIDTPGA 162 (317)
T ss_pred EEECCEEEEEEEEECCCCCHHHHHHCCCCCCC------HHHHHHH--HHHHHHHHH-CCCEEEEECCCCC
T ss_conf 56889358998542376606678760799992------6889999--999999985-9987999508987
No 41
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=58.86 E-value=13 Score=16.91 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 997389899999999997248973786334643146
Q gi|254780455|r 325 LVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND 360 (418)
Q Consensus 325 iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d 360 (418)
+|.++++|.+.+.++.+. |.+ |..|+|.-|-.|
T Consensus 288 vi~~G~i~~~~ae~~l~~--G~~-D~V~~gR~liaD 320 (338)
T cd02933 288 LIAAGGYDAESAEAALAD--GKA-DLVAFGRPFIAN 320 (338)
T ss_pred EEEECCCCHHHHHHHHHC--CCC-CHHHHHHHHHHC
T ss_conf 999699899999999987--996-036852999879
No 42
>PRK03352 DNA polymerase IV; Validated
Probab=58.71 E-value=13 Score=16.90 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=16.4
Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCEEEEEECC
Q ss_conf 98899997508998416873399269998548
Q gi|254780455|r 93 EPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGL 124 (418)
Q Consensus 93 ~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp 124 (418)
...+.+.|+.+--..+..++.|.=+.++.+.|
T Consensus 89 S~~i~~il~~~~~~vE~~SIDEafld~~~~~~ 120 (345)
T PRK03352 89 SEEVMALLRDLGHPVEVWGWDEAYLGADTDDP 120 (345)
T ss_pred HHHHHHHHHHCCCHHEECCCCCCEECCCCCCH
T ss_conf 99999999861916404146601115888999
No 43
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=58.57 E-value=8.1 Score=18.24 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHCCCCC-CEEEECCCCEEEEE
Q ss_conf 78988999975089984-16873399269998
Q gi|254780455|r 91 LFEPKFLSWLSDFQLPE-YDLSHKKGQYVLNF 121 (418)
Q Consensus 91 ~~~~~fl~~L~~~~f~~-~~~~~~eg~~~i~i 121 (418)
+-.+++.+-|..-+=-| ..+.+..|||..|-
T Consensus 37 L~T~~W~~Vl~qAa~lGvlqlHfSGGEP~aR~ 68 (363)
T TIGR02109 37 LTTEEWTDVLTQAAELGVLQLHFSGGEPLARP 68 (363)
T ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 88889999999998539067513077666335
No 44
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=57.26 E-value=13 Score=16.90 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHC---CCCCHHHHHHHHHC
Q ss_conf 9999999848996599999965887554400002369999999971---69998999999837
Q gi|254780455|r 24 LMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRS---LRITEKERKWLVEN 83 (418)
Q Consensus 24 tM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~---~rft~eei~yL~~~ 83 (418)
.|.+.++ ++....+++|.-..|..+....|+.|=++.|+..+. |=|+++|||||.+.
T Consensus 148 RMTe~vl---~~~~~~~~lf~~~Ep~~l~~v~vl~~GR~ALE~AN~elGLAL~~de~DYl~~~ 207 (1401)
T TIGR01735 148 RMTESVL---PHEEEAFELFSVPEPLKLTTVDVLGGGRKALEKANQELGLALDEDEIDYLTKR 207 (1401)
T ss_pred CHHHHHC---CCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 1235434---64345420113256657750011244489999998985304575688999999
No 45
>KOG2550 consensus
Probab=54.87 E-value=15 Score=16.48 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=57.5
Q ss_pred HCCCCEEECCC--CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 10024341288--8878999999999997798811308997389899999999997248973786334643146566666
Q gi|254780455|r 289 MTQWKGFRHDS--ASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTP 366 (418)
Q Consensus 289 ~~~~~GVR~DS--GD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~ 366 (418)
.+..+-|=+|| |.-.++.+-+ ++-++. + | ...||.+|-+.-+.+..|-..-....+..-|-|.-. -.. .
T Consensus 261 ~aGvdvviLDSSqGnS~~qiemi-k~iK~~-y-P-~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiC--iTq---e 331 (503)
T KOG2550 261 QAGVDVVILDSSQGNSIYQLEMI-KYIKET-Y-P-DLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSIC--ITQ---K 331 (503)
T ss_pred HCCCCEEEEECCCCCCHHHHHHH-HHHHHH-C-C-CCEEECCCEEEHHHHHHHHHCCCCEEEECCCCCCEE--EEC---E
T ss_conf 34886899966888504579999-999866-8-8-863431655338889999873676057525567505--453---0
Q ss_pred CCCCCCCCCCEEEEEEEE---CCCCEEE
Q ss_conf 655677732168985757---6811167
Q gi|254780455|r 367 YQNLQTEKLQIVCKVTKA---NDKHAVK 391 (418)
Q Consensus 367 ~~~~~~~~l~~VyKlve~---~g~P~~K 391 (418)
+++.+.|-...|||..+. -|.|||-
T Consensus 332 vma~GrpQ~TAVy~va~~A~q~gvpviA 359 (503)
T KOG2550 332 VMACGRPQGTAVYKVAEFANQFGVPCIA 359 (503)
T ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEC
T ss_conf 1232677620032699999764996550
No 46
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=53.98 E-value=15 Score=16.38 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=20.5
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEE--EEEECC
Q ss_conf 89973898999999999972489737--863346
Q gi|254780455|r 324 FLVFSDNLDVDSIIYTYKHFENRVQM--IFGWGT 355 (418)
Q Consensus 324 ~iv~Sd~Ld~e~i~~l~~~~~~~~~~--~fGIGT 355 (418)
.+++.++++++.+.+..+........ --|||+
T Consensus 188 ~m~~~~~~~~~~~~~~i~~v~~~~~i~lkvGIG~ 221 (254)
T PRK02240 188 FMAPCNGLSEKDFLDAIEHVREEAGVELKAGIGI 221 (254)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9987898776789999999874049448864457
No 47
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=53.76 E-value=13 Score=16.77 Aligned_cols=96 Identities=7% Similarity=0.026 Sum_probs=44.1
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf 56710012440117899999999984899659999996588755440000236999999997169998999999837775
Q gi|254780455|r 7 TSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFY 86 (418)
Q Consensus 7 ~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~ 86 (418)
.+=|||+|-.||=- +-.|+-|.-+++= --+..||.+ +++|.+.++..+ + .+- .-.....
T Consensus 43 l~iPivSAaMDTVT-E~~MAIamA~~GG-----iGvIH~Nms-----------ie~Qa~~V~kVK-~-~~~--~i~~Pvt 101 (479)
T PRK07807 43 TTIPVVVANMTAVA-GRRMAETVARRGG-----LVVLPQDLP-----------IDAVAETVAWVK-S-RDL--VFDTPVT 101 (479)
T ss_pred CCCCEEECCCCCCC-CHHHHHHHHHCCC-----EEEECCCCC-----------HHHHHHHHHHHH-C-CCC--EECCCEE
T ss_conf 87876845875447-4999999997798-----599879999-----------999999999971-1-377--4369989
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEC
Q ss_conf 5555789889999750899841687339926999854
Q gi|254780455|r 87 GKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHG 123 (418)
Q Consensus 87 ~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieG 123 (418)
.+...--.+-++..+...+++..+...+|.++=-|+.
T Consensus 102 i~pd~tv~d~~~l~~~~~~sg~pVv~~~gkLvGIvT~ 138 (479)
T PRK07807 102 LAPDDTVSDALALIHKRAHGAVVVVDEEGRPVGLVTE 138 (479)
T ss_pred ECCCCCHHHHHHHHHHHCCCCCCEECCCCCEEEEEEC
T ss_conf 7898719999999998378887414679947889821
No 48
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=53.66 E-value=15 Score=16.35 Aligned_cols=37 Identities=3% Similarity=0.067 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 99999999997798811308997389899999999997
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418)
-++|++++|++.|+++... =+..++++.+.+..+.+.
T Consensus 12 t~rka~~~Le~~gi~~~~~-d~~~~p~t~eeL~~~l~~ 48 (113)
T cd03033 12 NNARQKALLEAAGHEVEVR-DLLTEPWTAETLRPFFGD 48 (113)
T ss_pred HHHHHHHHHHHCCCCCEEE-EEECCCCCHHHHHHHHHH
T ss_conf 5799999999879994798-610689699999999985
No 49
>pfam05165 GGDN GGDN family. I have named this protein family of unknown function GGDN after the most conserved motif. The proteins are 200-270 amino acids in length.
Probab=52.54 E-value=16 Score=16.23 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=19.9
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCC--EEEEEECC
Q ss_conf 899738989999999999724897--37863346
Q gi|254780455|r 324 FLVFSDNLDVDSIIYTYKHFENRV--QMIFGWGT 355 (418)
Q Consensus 324 ~iv~Sd~Ld~e~i~~l~~~~~~~~--~~~fGIGT 355 (418)
.+++.+++++..+..+.+...... ..--|||+
T Consensus 181 ~m~~~~~~~~~~~~~~i~~i~~~~~i~lkvGIG~ 214 (246)
T pfam05165 181 FMAPCNGIDAGIVLDINNSVKETVDVDLKAGIGI 214 (246)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9997898657789999999886529527851456
No 50
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=51.71 E-value=16 Score=16.14 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC----CEEEECCCCEEEEEECC
Q ss_conf 236999999997169998999999837775555578988999975089984----16873399269998548
Q gi|254780455|r 57 ESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPE----YDLSHKKGQYVLNFHGL 124 (418)
Q Consensus 57 ~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~----~~~~~~eg~~~i~ieGp 124 (418)
..-++++|.+++.-.+|+||.++|.+-....-+....|.||+|-+...-.+ ..|....+.-...++|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~D~~G~ 91 (468)
T PRK11522 20 LACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQ 91 (468)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCC
T ss_conf 456799999998623798998675798999998526837777623211378636899965987879969999
No 51
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=50.89 E-value=17 Score=16.06 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999999999977988113089973898999999999972
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418)
-++|+++|+++.|+++.. .-+..+.++.+.+.++.++.
T Consensus 13 t~rka~~~L~~~gi~~~~-~~~~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 13 TCRKALAWLEEHGIEYTF-IDYLKTPPSREELKKILSKL 50 (117)
T ss_pred HHHHHHHHHHHCCCCCEE-EEEECCCCCHHHHHHHHHHC
T ss_conf 899999999986999679-88206999999999999984
No 52
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=48.84 E-value=18 Score=15.85 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
Q ss_conf 8878999999999997798811308997389899999
Q gi|254780455|r 300 ASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSI 336 (418)
Q Consensus 300 GD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i 336 (418)
|-+.....|+ .+.||. ++..|+.++.|+.+..
T Consensus 205 GTL~dIa~kv----~~~~i~-rTAlIiVG~~l~~~~~ 236 (254)
T COG2875 205 GTLEDIAEKV----KEAGIR-RTALIIVGDVLDPEGF 236 (254)
T ss_pred EEHHHHHHHH----HHCCCE-EEEEEEECCCCCCCCC
T ss_conf 6599999999----865960-6899998355575766
No 53
>KOG3841 consensus
Probab=48.28 E-value=18 Score=15.83 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=15.0
Q ss_pred CCCCCCH----HHHHHHHHCCCCCCEEEECCCCEEEEEECCHH
Q ss_conf 5557898----89999750899841687339926999854877
Q gi|254780455|r 88 KKQLFEP----KFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWK 126 (418)
Q Consensus 88 ~~~~~~~----~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~ 126 (418)
++..|.| .|.+-|+-+--.++ ..++|+=||.++
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGr------rKIilsdegkmy 111 (455)
T KOG3841 75 AEGVWSPDIEQSFQEALAIYPPCGR------RKIILSDEGKMY 111 (455)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC------EEEEECCCCCCC
T ss_conf 5666681389999999863388885------068874676322
No 54
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=47.83 E-value=19 Score=15.74 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=41.5
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCC-------CEEH---------HHHHHHHHHC--CCCCCCC--CCHHHHHHHHC
Q ss_conf 84244347978899999999842121-------2012---------4788999972--8987675--20489876400
Q gi|254780455|r 184 DFGTRRRHSLTWQKWCIEALQEGIKD-------SFLG---------TSNALLAMNY--KINAIGT--SAHELPMVAAA 241 (418)
Q Consensus 184 eFG~RR~~s~~~q~~~v~~~raa~~~-------gf~G---------TSNv~aa~~~--gi~~~GT--maHs~v~a~~~ 241 (418)
.||+|+|=.. +-.++++-++.||.- .|-| ||+|.+|.+. .+|+.|= .||.+-+++.-
T Consensus 520 SM~ar~RM~~-~KGavLsLL~DAYq~RDkValI~FrG~~AevlLPPT~sv~~A~r~L~~lPtGGrTPLa~gL~~A~~v 596 (688)
T TIGR02442 520 SMAARGRMAA-AKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGRTPLAAGLLKAAEV 596 (688)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 0442357899-8999999888888627768886236734357658788489999999728898987458999999999
No 55
>PRK02406 DNA polymerase IV; Validated
Probab=47.77 E-value=19 Score=15.74 Aligned_cols=28 Identities=4% Similarity=-0.052 Sum_probs=12.7
Q ss_pred HHHHHHHHCCCCCCEEEECCCCEEEEEECC
Q ss_conf 899997508998416873399269998548
Q gi|254780455|r 95 KFLSWLSDFQLPEYDLSHKKGQYVLNFHGL 124 (418)
Q Consensus 95 ~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp 124 (418)
...+.|+. |++.+-...-.|-.+.+++.
T Consensus 89 ~i~~il~~--~~~~vE~~SIDEaflDvt~~ 116 (355)
T PRK02406 89 QIREIFRR--YTDLIEPLSLDEAYLDVTDS 116 (355)
T ss_pred HHHHHHHH--CCCCEEECCCCEEEEECCCC
T ss_conf 99999871--79826662477078863554
No 56
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=47.24 E-value=19 Score=15.68 Aligned_cols=232 Identities=14% Similarity=0.049 Sum_probs=115.1
Q ss_pred CCCCHHHHCCHHH-------HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 7100124401178-------999999999848996599999965887554400002369999999971699989999998
Q gi|254780455|r 9 DPIISSLLDTDFY-------KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLV 81 (418)
Q Consensus 9 ~piI~SlLdTD~Y-------kltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~ 81 (418)
+.+|+.-|.-|+= -+|- +. + -++..++..+..|.+ .|++|+...-.-++.+
T Consensus 24 ~~~i~~AL~EDlG~~~d~~gDiTs-~l-i--p~d~~~~A~i~ake~-------gVl~G~~~~~~vf~~~----------- 81 (296)
T PRK09016 24 PAAVAQALREDLGGTVDANNDITA-QL-L--PADSQSHATIITRED-------GVFCGKRWVEEVFIQL----------- 81 (296)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHH-HH-C--CCCCEEEEEEEECCC-------EEEECHHHHHHHHHHH-----------
T ss_conf 999999999776899899985236-54-6--999879999998799-------8997699999999996-----------
Q ss_pred HCCCCCCCCCCCHHHHHHHHHCC---CCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 37775555578988999975089---984168733992699985487786778889999998888877531348667999
Q gi|254780455|r 82 ENSFYGKKQLFEPKFLSWLSDFQ---LPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDL 158 (418)
Q Consensus 82 ~~~~~~~~~~~~~~fl~~L~~~~---f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~ 158 (418)
++ +.+ +-.+.-.+.+|+.+++|+||-.....-|=..||++..+...+|..
T Consensus 82 -----------d~-------~v~~~~~~~DG~~v~~G~~i~~i~G~a~~IL~~ER~aLNfLqrlSGIAT~T--------- 134 (296)
T PRK09016 82 -----------GD-------DVTIEWHVDDGDKITANQTLCELTGPARVLLTGERTALNFVQTLSGVATEV--------- 134 (296)
T ss_pred -----------CC-------CEEEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf -----------99-------739999879898838999999999768999999999999999999999999---------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH--HHHHHHHHHHHH-CCCCEEHHHHHHHHHHCCC----CCCCCC
Q ss_conf 999999999987776742699759984244347978--899999999842-1212012478899997289----876752
Q gi|254780455|r 159 LYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLT--WQKWCIEALQEG-IKDSFLGTSNALLAMNYKI----NAIGTS 231 (418)
Q Consensus 159 ~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~--~q~~~v~~~raa-~~~gf~GTSNv~aa~~~gi----~~~GTm 231 (418)
.+...++ ...+.+++ .||--.+-. .| ++| ..|| -.| +++|+ -+.-
T Consensus 135 ------~~~V~~i----~~~~~~il--dTRKT~PGlR~le-------KyAV~~GG---G~n----HR~gL~D~iLIKd-- 186 (296)
T PRK09016 135 ------RRYVELL----AGTNTQLL--DTRKTLPGLRSAL-------KYAVLCGG---GAN----HRLGLSDAFLIKE-- 186 (296)
T ss_pred ------HHHHHHH----CCCCCEEE--ECCCCCCCCHHHH-------HHHHHHCC---CCC----CCCCCCCEEEEEC--
T ss_conf ------9999970----79887897--4566687640999-------99999679---123----3587610799855--
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 04898764001220367865499999999996398865986346898999998997310024341288887899999999
Q gi|254780455|r 232 AHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIA 311 (418)
Q Consensus 232 aHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~ 311 (418)
-| +.+.++.. .|...--...|...-..=+||. +.+ . .....+-+.|=+|--+|... +++.+
T Consensus 187 NH--i~~~g~i~-----------~av~~ar~~~~~~~IeVEv~~l--~q~-~--eal~~gaDiIlLDN~s~~~~-k~av~ 247 (296)
T PRK09016 187 NH--IIASGSIR-----------QAVEKAFWLHPDVPVEVEVENL--DEL-D--QALKAGADIIMLDNFTTEQM-REAVK 247 (296)
T ss_pred CC--HHHHCCHH-----------HHHHHHHHHCCCCCEEEEECCH--HHH-H--HHHHCCCCEEEECCCCHHHH-HHHHH
T ss_conf 60--56517899-----------9999999868998589996878--999-9--99965999999889899999-99999
Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 9997798811308997389899999999997
Q gi|254780455|r 312 WWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342 (418)
Q Consensus 312 ~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418)
+. + + ...+=+|++++.+.+.+.-+.
T Consensus 248 ~~---~--~-~~~lEaSGgI~l~ni~~yA~t 272 (296)
T PRK09016 248 RT---N--G-KAALEVSGNVTLETLREFAET 272 (296)
T ss_pred HH---C--C-CEEEEEECCCCHHHHHHHHHC
T ss_conf 74---7--9-679998789989999999972
No 57
>TIGR01617 arsC_related conserved hypothetical protein; InterPro: IPR006504 These sequences are a part of the Arsenate reductase family of sequences. The family includes a glutaredoxin-dependent arsenate reductase that works together with an arsenite exporter. It also includes an uncharacterised family associated with nitrogenase system genes in a number of phylogenetically distant species. The function of this group of sequences seems unlikely to be arsenate reductase, although that assignment has been given to a number of members of this family. .
Probab=46.13 E-value=20 Score=15.57 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 999999999997798811308997389899999999997248973786334643
Q gi|254780455|r 304 EGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 304 ~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
.-++|+++||++.||+- +...+..|++.-|.+..+...+. =||++-+
T Consensus 10 ~tckKa~~wL~~~~i~y-~~i~~~~~~~~~e~l~~~l~~~~------~g~~~l~ 56 (122)
T TIGR01617 10 TTCKKARRWLEANGIEY-EEIDLKEDTPTREELKEILSLLE------DGIDPLL 56 (122)
T ss_pred HHHHHHHHHHHHCCCCC-CEEECCCCCCCHHHHHHHHHHHH------HHHHHHH
T ss_conf 12698999998539853-20003458978789999987401------0012333
No 58
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=45.97 E-value=20 Score=15.55 Aligned_cols=83 Identities=13% Similarity=0.084 Sum_probs=46.4
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 67426997599842443479788999999998421212012478899997289876752048987640012203678654
Q gi|254780455|r 173 KLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNA 252 (418)
Q Consensus 173 ~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~ 252 (418)
++.+..|.++.-+-.=-+-|.+....+++++|. .+++||+|.+|-|-|.-.+.- ++.-+......
T Consensus 86 DV~amGG~Pv~~vd~isa~s~d~~~ei~eglr~-------------~a~kfgvpivGGhthpd~~y~-vl~v~i~gl~~- 150 (324)
T COG2144 86 DVAAMGGEPVGAVDAISAKSEDQAREILEGLRK-------------GARKFGVPIVGGHTHPDTPYC-VLDVVIGGLIA- 150 (324)
T ss_pred HHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHH-------------HHHHCCCCEECCCCCCCCCCC-EEEEEEECCCC-
T ss_conf 335517961488886434878999999999998-------------888549853467158887776-44468740236-
Q ss_pred HHHHHHHHH---HHCCCCCEEEEEC
Q ss_conf 999999999---9639886598634
Q gi|254780455|r 253 PYQMMQQWN---RLYDDNLLIVLPD 274 (418)
Q Consensus 253 ~~~a~~~~~---~~yp~~~~i~L~D 274 (418)
-+... ..=||++.|++.|
T Consensus 151 ----~e~Ii~s~~Ak~GD~lI~~~d 171 (324)
T COG2144 151 ----EEPIITSGTAKPGDLLIFVGD 171 (324)
T ss_pred ----CCCCCCCCCCCCCCEEEEEEC
T ss_conf ----542303689886877999961
No 59
>pfam03255 ACCA Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit. Acetyl co-enzyme A carboxylase carboxyltransferase is composed of an alpha and beta subunit.
Probab=45.36 E-value=20 Score=15.49 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=48.7
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC-CCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC----
Q ss_conf 973898999999999972489737863346431465666666-556777321689857576811167326887524----
Q gi|254780455|r 326 VFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPY-QNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT---- 400 (418)
Q Consensus 326 v~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~-~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t---- 400 (418)
|+|| |+.+....+-.+. .++...-= =.++..||.-+.+- ...+.| .+|.=+..++|+||+=|....|+.|
T Consensus 48 iys~-LtpWQkVqvARHP-~RP~t~DY-I~~if~dF~ELhGDR~f~DD~--AIigG~a~i~~~~v~viG~qKG~~t~e~i 122 (145)
T pfam03255 48 IYSN-LTPWQRVQLARHP-DRPTTLDY-IENILDDFIELHGDRAGADDP--AIVGGLGRIDGRPVVVIGHQKGRDTKENL 122 (145)
T ss_pred HHHC-CCHHHHHHHHHCC-CCCCHHHH-HHHHCCCCEEECCCCCCCCCC--CCEEEEEEECCEEEEEEEEECCCCHHHHH
T ss_conf 9967-9999999987487-88869999-998606677633885666697--40577889999689999872588768888
Q ss_pred ----C--CHHHHHHHHHHCCCC
Q ss_conf ----8--889999999980966
Q gi|254780455|r 401 ----G--DISEIKRYLKIFKIK 416 (418)
Q Consensus 401 ----g--~~~~~~~~~~~~~~~ 416 (418)
| .++.||+.+|.+...
T Consensus 123 ~rNFGm~~PeGYRKa~Rlm~lA 144 (145)
T pfam03255 123 LRNFGMPAPEGYRKALRLMKHA 144 (145)
T ss_pred HHCCCCCCCHHHHHHHHHHHHC
T ss_conf 8628999910779999999855
No 60
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=45.34 E-value=21 Score=15.49 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=63.1
Q ss_pred EEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHH
Q ss_conf 012478899997289876752048987640012203678654999999999963988659863468-9899999899731
Q gi|254780455|r 211 FLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSF-GTDFFLEHAPSWM 289 (418)
Q Consensus 211 f~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy-~~~~~l~~~~~~~ 289 (418)
|--|-++.=|.. --..|.++| ||+.|.+..+-..+|-|+-+....|.+.||..-.|=|=-=| ++.+-|+.+..+.
T Consensus 222 FQDTN~iQYaw~--rllAg~~~~--V~~VGDDDQsIYgwRGA~veni~~fl~dF~~~~tirLEQNYRS~~nIL~AAN~lI 297 (741)
T TIGR01075 222 FQDTNKIQYAWI--RLLAGETGN--VMIVGDDDQSIYGWRGAQVENIQKFLKDFPIAETIRLEQNYRSTANILAAANALI 297 (741)
T ss_pred CCCCHHHHHHHH--HHHCCCCCC--EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 245006999999--996089963--7988558742012457641888999974678885342003221788999988998
Q ss_pred CCC-----CEEECCC--CCH------------HHHHHHHHHHHHHCCCCCCCEEEEE-CCCCC
Q ss_conf 002-----4341288--887------------8999999999997798811308997-38989
Q gi|254780455|r 290 TQW-----KGFRHDS--ASP------------IEGGEKIIAWWKKMNCNPQNKFLVF-SDNLD 332 (418)
Q Consensus 290 ~~~-----~GVR~DS--GD~------------~~~~~k~~~~l~~~Gidp~~k~iv~-Sd~Ld 332 (418)
+.- +-++=|+ ||+ +.+...-++.|.+.|-+-..+-|.+ ||.--
T Consensus 298 anN~~RlGK~LwT~g~~Ge~i~~YsAfneLdEArFvv~~~~~w~~~GG~l~e~AvLYRsNAQS 360 (741)
T TIGR01075 298 ANNDERLGKNLWTDGEVGEPISLYSAFNELDEARFVVSRIKAWQREGGALDEIAVLYRSNAQS 360 (741)
T ss_pred HCCCCCCCCCEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH
T ss_conf 528865675301345678702576513413789999999999986589641365663255246
No 61
>PRK05337 beta-hexosaminidase; Provisional
Probab=45.12 E-value=16 Score=16.30 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=26.1
Q ss_pred ECCCCCHHHHHHHHHHH-H-HHCCCCCCCEEEEECCCCCHHHH
Q ss_conf 12888878999999999-9-97798811308997389899999
Q gi|254780455|r 296 RHDSASPIEGGEKIIAW-W-KKMNCNPQNKFLVFSDNLDVDSI 336 (418)
Q Consensus 296 R~DSGD~~~~~~k~~~~-l-~~~Gidp~~k~iv~Sd~Ld~e~i 336 (418)
.+|. .|+.+|+++++- | +++|++ .+|+||+|.-+-+
T Consensus 219 ~iD~-~PAs~S~~~i~~iLR~~lgF~----GviiSDDL~M~a~ 256 (336)
T PRK05337 219 QVDP-QPAGFSRYWLQDILRQELGFD----GVIFSDDLSMEGA 256 (336)
T ss_pred CCCC-CCCCCCHHHHHHHHHHHCCCC----CEEECCCCCCCCH
T ss_conf 6689-877379999999999755998----4897627586111
No 62
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis..
Probab=44.45 E-value=11 Score=17.22 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=12.2
Q ss_pred CCCCEEHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 121201247889999728987675204
Q gi|254780455|r 207 IKDSFLGTSNALLAMNYKINAIGTSAH 233 (418)
Q Consensus 207 ~~~gf~GTSNv~aa~~~gi~~~GTmaH 233 (418)
.+.|..=|++ +.-||.+.|=|-|
T Consensus 153 TivGvf~tP~----y~~G~~V~GyHlH 175 (234)
T TIGR01252 153 TIVGVFWTPA----YAKGINVAGYHLH 175 (234)
T ss_pred EEEEEEECHH----HHCCCCCCCCEEE
T ss_conf 9999710715----5303788830578
No 63
>PRK03858 DNA polymerase IV; Validated
Probab=43.98 E-value=21 Score=15.35 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=12.7
Q ss_pred HHHHHHHHCCCCCCEEEECCCCEEEEEECC
Q ss_conf 899997508998416873399269998548
Q gi|254780455|r 95 KFLSWLSDFQLPEYDLSHKKGQYVLNFHGL 124 (418)
Q Consensus 95 ~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp 124 (418)
...+.|+. +++.+-...=.|-.+.++|.
T Consensus 82 ~i~~il~~--~~p~ve~ySIDE~FlDlt~~ 109 (398)
T PRK03858 82 AVFEVFRD--TTPLVEPLSIDEAFLDVSGL 109 (398)
T ss_pred HHHHHHHH--HCCCEEECCCCEEEEECCCC
T ss_conf 99999997--19751651477278854544
No 64
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=43.30 E-value=12 Score=17.19 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=7.3
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999999716999
Q gi|254780455|r 60 LRTQLDHVRSLRIT 73 (418)
Q Consensus 60 L~~~i~~l~~~rft 73 (418)
++..|+-|++-+=|
T Consensus 163 v~~fi~~m~das~~ 176 (1032)
T PRK09853 163 MQQFIDNMMDASDH 176 (1032)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 89999986633147
No 65
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 . Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=42.81 E-value=22 Score=15.23 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=57.9
Q ss_pred EECCCC--HHHHHHHHHH-HHCCCCEEECCCCCHHHHH--HHHHHHHHHCCCCCC------------------------C
Q ss_conf 634689--8999998997-3100243412888878999--999999997798811------------------------3
Q gi|254780455|r 272 LPDSFG--TDFFLEHAPS-WMTQWKGFRHDSASPIEGG--EKIIAWWKKMNCNPQ------------------------N 322 (418)
Q Consensus 272 L~DTy~--~~~~l~~~~~-~~~~~~GVR~DSGD~~~~~--~k~~~~l~~~Gidp~------------------------~ 322 (418)
+.||=+ .+....-... ....-.-+|+-||||.-++ .+-.+.|+++||+.. +
T Consensus 49 ~~~sA~m~L~ei~~~m~~a~~~GK~VvRLHsGDPsIYGA~~EQ~~~L~~~gI~~e~vPGvSsf~AAAA~l~~ELT~P~vs 128 (252)
T TIGR01465 49 VVNSAAMSLEEIVDIMVDAVREGKLVVRLHSGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVS 128 (252)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCE
T ss_conf 86050269889999999998669849998508755776699999999867897798688738989999730014788403
Q ss_pred EEEEE---CCCCC----HHHHHHHHHHHCCCCEEEEEECCCC---CCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 08997---38989----9999999997248973786334643---146566666655677732168985757681
Q gi|254780455|r 323 KFLVF---SDNLD----VDSIIYTYKHFENRVQMIFGWGTNL---TNDFDGCTPYQNLQTEKLQIVCKVTKANDK 387 (418)
Q Consensus 323 k~iv~---Sd~Ld----~e~i~~l~~~~~~~~~~~fGIGT~L---t~d~~~~~~~~~~~~~~l~~VyKlve~~g~ 387 (418)
.+||+ |+.=. -|++.+|-++ +...+.|==.+.+ -+|+-. ..+.. .-|+-+|||.+.-+.+
T Consensus 129 QtvilTR~eG~RtPmPe~E~l~~lA~h--gaTm~IfLs~~~~~~vv~~L~~--~GY~~-DTPV~vVyratWPDE~ 198 (252)
T TIGR01465 129 QTVILTRAEGRRTPMPEGEKLADLAKH--GATMAIFLSAHIIDKVVKELIE--GGYSE-DTPVAVVYRATWPDEK 198 (252)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHH--CCCCC-CCCEEEEEEECCCCCE
T ss_conf 424467543435457766789988741--2313567789999999999983--77688-8878989851487565
No 66
>pfam08519 RFC1 Replication factor RFC1 C terminal domain. This is the C terminal domain of replication factor C, RFC1. RFC complexes hydrolyse ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo.
Probab=42.15 E-value=23 Score=15.16 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=4.5
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999997798
Q gi|254780455|r 307 EKIIAWWKKMNC 318 (418)
Q Consensus 307 ~k~~~~l~~~Gi 318 (418)
+++++.+|+.++
T Consensus 106 ~~vi~~Md~Y~L 117 (155)
T pfam08519 106 EEVIELMDEYYL 117 (155)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998499
No 67
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=42.00 E-value=23 Score=15.15 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHC--CC---------CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6898999998997310--02---------434128888789999999999977988113089973898999999999972
Q gi|254780455|r 275 SFGTDFFLEHAPSWMT--QW---------KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418)
Q Consensus 275 Ty~~~~~l~~~~~~~~--~~---------~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418)
+|+++-.+..-..... .+ .--|-||.|+..+..++|+-|..-|+.++ +=.|++++.+.+..-..+.
T Consensus 216 sYs~eelL~lCek~~iPlVfD~HHh~v~~~l~~~~~~sl~~~~~r~r~TW~~~~lq~k---vHlSs~~~~~~dr~H~~~i 292 (347)
T COG4294 216 SYSTEELLPLCEKLNIPLVFDAHHHNVHPGLDREDSPSLMELIPRIRETWTRPGLQQK---VHLSSPASGTADRRHSDYI 292 (347)
T ss_pred CCCHHHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE---EEECCCCCCCCCCHHHHHH
T ss_conf 3669999999887389879850123306888655781499999999974258787614---7756888754440266652
Q ss_pred C
Q ss_conf 4
Q gi|254780455|r 344 E 344 (418)
Q Consensus 344 ~ 344 (418)
.
T Consensus 293 ~ 293 (347)
T COG4294 293 H 293 (347)
T ss_pred C
T ss_conf 0
No 68
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase; InterPro: IPR012801 Members of this family known so far are catechol 1,2-dioxygenases of the proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the actinobacteria, which are quite similar to each other and resolved by separate entries. This enzyme catalyses intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogues 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.; GO: 0005506 iron ion binding, 0018576 catechol 12-dioxygenase activity, 0019614 catechol catabolic process.
Probab=41.51 E-value=17 Score=16.05 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCCCCHHHH----HHHHHCCCCCCCCCCCHH--HHHHH
Q ss_conf 999999997169998999----999837775555578988--99997
Q gi|254780455|r 60 LRTQLDHVRSLRITEKER----KWLVENSFYGKKQLFEPK--FLSWL 100 (418)
Q Consensus 60 L~~~i~~l~~~rft~eei----~yL~~~~~~~~~~~~~~~--fl~~L 100 (418)
|+.+-+.+++|=+|++|. +||-+.+-.....++.+. |-+||
T Consensus 33 l~Dlf~~IeDLdIT~~E~W~A~~YLn~lGq~~E~GLLaAGLG~eHfL 79 (288)
T TIGR02439 33 LSDLFRAIEDLDITPDEFWAAVNYLNRLGQSNEAGLLAAGLGFEHFL 79 (288)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 67787765532178678899999998713036620103212035787
No 69
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=40.92 E-value=24 Score=15.04 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=7.8
Q ss_pred CCCCCCCEEEEEEEECCCC
Q ss_conf 6777321689857576811
Q gi|254780455|r 370 LQTEKLQIVCKVTKANDKH 388 (418)
Q Consensus 370 ~~~~~l~~VyKlve~~g~P 388 (418)
.-++++-.+-..+|+..+|
T Consensus 237 l~~d~~~L~aeViEik~kp 255 (353)
T cd06815 237 LYQDAFTLEAEIIEIKEKP 255 (353)
T ss_pred CCCCCEEEEEEEEEEECCC
T ss_conf 0464189999999950467
No 70
>KOG1495 consensus
Probab=40.72 E-value=24 Score=15.02 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=6.0
Q ss_pred EEHHHHHHHHHHCC
Q ss_conf 01247889999728
Q gi|254780455|r 211 FLGTSNALLAMNYK 224 (418)
Q Consensus 211 f~GTSNv~aa~~~g 224 (418)
|.-+.||.+.+-|.
T Consensus 71 f~~~~~V~~~~Dy~ 84 (332)
T KOG1495 71 FLSTPNVVASKDYS 84 (332)
T ss_pred CCCCCCEEECCCCC
T ss_conf 02688367667632
No 71
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.18 E-value=24 Score=14.96 Aligned_cols=17 Identities=24% Similarity=0.044 Sum_probs=7.6
Q ss_pred EEECCCCCHHHHHHHHH
Q ss_conf 34128888789999999
Q gi|254780455|r 294 GFRHDSASPIEGGEKII 310 (418)
Q Consensus 294 GVR~DSGD~~~~~~k~~ 310 (418)
+.++|.-+...+.++++
T Consensus 198 ~~~~~~~~~~~i~~~v~ 214 (308)
T cd05292 198 GRPFDEEVREEIFEEVR 214 (308)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 78899999999999998
No 72
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=39.83 E-value=24 Score=14.96 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 678654999999999963988659863468989
Q gi|254780455|r 247 IETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTD 279 (418)
Q Consensus 247 ~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~ 279 (418)
..||.|- -+-.+++-| +-+-|+++||-|-+
T Consensus 143 ~GYRKAL--rLm~~AerF-~~PIi~fiDT~GAY 172 (329)
T TIGR00513 143 EGYRKAL--RLMKMAERF-NLPIITFIDTPGAY 172 (329)
T ss_pred CCHHHHH--HHHHHHHHC-CCCEEEEECCCCCC
T ss_conf 6047999--999877761-79858865388887
No 73
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=39.56 E-value=25 Score=14.90 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=29.7
Q ss_pred EEECCCCC-HHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 34128888-78999999999997798-811308997389899999999997248973786334643
Q gi|254780455|r 294 GFRHDSAS-PIEGGEKIIAWWKKMNC-NPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 294 GVR~DSGD-~~~~~~k~~~~l~~~Gi-dp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
+++...|- ...-.+++.+.+.+.+- ++....|++|||-+-...........+-.+-+||+|+..
T Consensus 70 ~l~~~GgT~i~~gl~~a~~~l~~~~~~~~~~~IiLlTDG~~n~~~~~~~~~~~~i~i~tiGiG~~~ 135 (155)
T cd01466 70 GLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAVVLRADNAPIPIHTFGLGASH 135 (155)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 377688872679999999999843668983089998269864057789987179739999978867
No 74
>pfam11557 DUF3233 Protein of unknown function (DUF3233). This is a bacterial family of uncharacterized proteins.
Probab=38.63 E-value=18 Score=15.93 Aligned_cols=56 Identities=20% Similarity=0.155 Sum_probs=39.0
Q ss_pred CCEEEEEECCCC---CCCCCCCCCCCCCCCCCCCEEEEEEEEC---CCCEEEEECCCCCCCC
Q ss_conf 973786334643---1465666666556777321689857576---8111673268875248
Q gi|254780455|r 346 RVQMIFGWGTNL---TNDFDGCTPYQNLQTEKLQIVCKVTKAN---DKHAVKLSDDPAKTTG 401 (418)
Q Consensus 346 ~~~~~fGIGT~L---t~d~~~~~~~~~~~~~~l~~VyKlve~~---g~P~~KlSd~~~K~tg 401 (418)
.-..++|+||+| -||+.--+|.-.+-+|.|++++--+... .+|.+|++=...|.=|
T Consensus 148 ~Wtl~~g~g~Hlm~Y~N~~~yns~~~~~~~~~lDg~~~NtsawA~~~ePn~kl~Y~~~~~wG 209 (327)
T pfam11557 148 NWTLSVGIGAHLMHYRNTYTYNSDVSKSYSSILDGLLVNTSAWAFIVEPNIKLKYTQEKSWG 209 (327)
T ss_pred CEEEEECCCEEEEEEECCCEECCHHHHHHHHHHCCEEEECCCCEEEECCCEEEEEECCCCCC
T ss_conf 18997616307999835632168788865565357199533230665675068985578761
No 75
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=36.59 E-value=28 Score=14.59 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.9
Q ss_pred HHHHHCCCCC
Q ss_conf 9999728987
Q gi|254780455|r 218 LLAMNYKINA 227 (418)
Q Consensus 218 ~aa~~~gi~~ 227 (418)
..|.+++++|
T Consensus 153 ~ia~~l~v~~ 162 (306)
T cd05291 153 ALAEKLNVDP 162 (306)
T ss_pred HHHHHHCCCH
T ss_conf 9999859995
No 76
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=36.24 E-value=28 Score=14.56 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 99999779881130899738989999999999724
Q gi|254780455|r 310 IAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE 344 (418)
Q Consensus 310 ~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~ 344 (418)
.+..+++|+||..+ -++|+++.+..|.+...
T Consensus 39 ~~Ic~~lgId~~~k----~~~Lte~qi~~l~~~i~ 69 (149)
T PRK04053 39 RAIARKLGLDPHAK----LGYLSDEEIEKIEEALE 69 (149)
T ss_pred HHHHHHHCCCCCCC----CCCCCHHHHHHHHHHHH
T ss_conf 99999918998773----07499999999999997
No 77
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=36.01 E-value=28 Score=14.53 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999999999977988113089973898999999999972
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418)
-+++++++|++.|+++.. .-+..+.++.+.+..+.+..
T Consensus 11 ~~rka~~~L~~~~i~~~~-~d~~k~~~s~~eL~~~l~~~ 48 (105)
T cd02977 11 TSRKALAWLEEHGIEYEF-IDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred HHHHHHHHHHHCCCCCEE-EHHHHCCCCHHHHHHHHHHC
T ss_conf 899999999857997388-60432269999999999975
No 78
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=35.67 E-value=22 Score=15.32 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999999999977988113089973898999999999972
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418)
-++|+++||++.|++... .-+..+.++.+.+..+....
T Consensus 12 t~rkA~~wL~~~~i~~~~-~d~~~~plt~~el~~~l~~~ 49 (131)
T PRK01655 12 SCRKAKAWLEEHEIPFTE-RNIFSSPLTIDEIKQILSMT 49 (131)
T ss_pred HHHHHHHHHHHCCCCCHH-HHHHHCCCCHHHHHHHHHHH
T ss_conf 899999999976998115-67876389999999999981
No 79
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=35.43 E-value=29 Score=14.47 Aligned_cols=38 Identities=5% Similarity=0.052 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999999999977988113089973898999999999972
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418)
-+++++++|++.|+++.- .=+..+.++.+.+..+.+..
T Consensus 11 t~rka~~~L~~~~i~~~~-idy~~~p~~~~eL~~~~~~~ 48 (112)
T cd03034 11 KSRNALALLEEAGIEPEI-VEYLKTPPTAAELRELLAKL 48 (112)
T ss_pred HHHHHHHHHHHCCCCCEE-EECCCCCCCHHHHHHHHHHC
T ss_conf 899999999987998489-85014679999999999882
No 80
>PRK10122 UTP--glucose-1-phosphate uridylyltransferase subunit GalF; Provisional
Probab=35.29 E-value=25 Score=14.88 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=31.5
Q ss_pred HHHHHHHHHHCCCCCE-EEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 9999999996398865-986346898999998997310024341288887899999999
Q gi|254780455|r 254 YQMMQQWNRLYDDNLL-IVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIA 311 (418)
Q Consensus 254 ~~a~~~~~~~yp~~~~-i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~ 311 (418)
.+.|+...++-|+.-+ +-|+|.... ..+.-.-++..+.|-|.|+|++..|.+-.++
T Consensus 219 p~IF~~L~~~~p~~~GEiqLTDAi~~--l~~~~~v~~~~~~G~~~D~G~~~g~l~A~i~ 275 (297)
T PRK10122 219 ADIWPELERTQPGAWGRIQLTDAIAE--LAKKQSVDAMLMTGDSYDCGKKMGYMQAFVK 275 (297)
T ss_pred HHHHHHHHHCCCCCCCEEEHHHHHHH--HHCCCCEEEEEECCEEECCCCHHHHHHHHHH
T ss_conf 79999997089999985889999999--9701987999955179757986269999999
No 81
>PRK05805 phosphate butyryltransferase; Validated
Probab=35.17 E-value=29 Score=14.44 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=23.1
Q ss_pred HCCCCEEHHHHHHHH---HHCCCCCCCCCCHHHHHHH
Q ss_conf 212120124788999---9728987675204898764
Q gi|254780455|r 206 GIKDSFLGTSNALLA---MNYKINAIGTSAHELPMVA 239 (418)
Q Consensus 206 a~~~gf~GTSNv~aa---~~~gi~~~GTmaHs~v~a~ 239 (418)
+.+.|...|++++.+ +.-|+++..+++|-++|-.
T Consensus 94 ~lv~G~~~t~~~lr~~l~~~~g~~~g~~~s~~~~~~~ 130 (301)
T PRK05805 94 MVMKGLVDTATFLRAVLNKEIGLRTGKTMSHVAVFEV 130 (301)
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf 7863875543899998510147778871789999996
No 82
>PRK06223 malate dehydrogenase; Reviewed
Probab=35.02 E-value=29 Score=14.43 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=8.3
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 89999728987675
Q gi|254780455|r 217 ALLAMNYKINAIGT 230 (418)
Q Consensus 217 v~aa~~~gi~~~GT 230 (418)
...|.+++++|.--
T Consensus 153 ~~ia~~l~v~~~~V 166 (312)
T PRK06223 153 YFLAEEFNVSVKDV 166 (312)
T ss_pred HHHHHHHCCCHHHE
T ss_conf 99999969896574
No 83
>PRK10853 hypothetical protein; Provisional
Probab=34.25 E-value=30 Score=14.34 Aligned_cols=37 Identities=14% Similarity=0.028 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 99999999997798811308997389899999999997
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418)
-++|+++||++.||+..-.. +-.++++.+.+....++
T Consensus 12 TckKA~kwL~~~~i~y~f~D-~k~~~~~~~~l~~wl~~ 48 (118)
T PRK10853 12 TIKKARRWLEENGIDYRFHD-YRVDGLDSELLNGFIAE 48 (118)
T ss_pred HHHHHHHHHHHCCCCCEEEE-CCCCCCCHHHHHHHHHH
T ss_conf 99999999998799818963-11469899999999996
No 84
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=33.95 E-value=22 Score=15.25 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=58.5
Q ss_pred CCCCEEECCC--CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 0024341288--88789999999999977988113089973898999999999972489737863346431465666666
Q gi|254780455|r 290 TQWKGFRHDS--ASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPY 367 (418)
Q Consensus 290 ~~~~GVR~DS--GD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~ 367 (418)
+.-+-|=||| |+-.+..+-+++ -++.=. ...||+.|=-+.+.+..|-+......+..-|=|-=.|--. +
T Consensus 250 AGvDv~viDsshGhs~~vl~~ik~-~k~~Yp---~~~iiaGNVaT~~~a~~LI~AgADg~rVGiGpGSICTTr~-----V 320 (476)
T TIGR01302 250 AGVDVIVIDSSHGHSIYVLDSIKK-IKKTYP---DLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI-----V 320 (476)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH-HHHHCC---EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEE-----E
T ss_conf 596589981665453789999999-986388---0579943441178898898528887898368898110015-----6
Q ss_pred CCCCCCCCCEEEEEEEE---CCCCEE-----EEECCCCCCC
Q ss_conf 55677732168985757---681116-----7326887524
Q gi|254780455|r 368 QNLQTEKLQIVCKVTKA---NDKHAV-----KLSDDPAKTT 400 (418)
Q Consensus 368 ~~~~~~~l~~VyKlve~---~g~P~~-----KlSd~~~K~t 400 (418)
++.+.|=+-.||+-++. .|.||| |.|-|+-|+.
T Consensus 321 ~gVGvPQ~TAv~~Va~~A~~~Gi~VIADGGIr~SGDivKAl 361 (476)
T TIGR01302 321 AGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKAL 361 (476)
T ss_pred EECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
T ss_conf 51276268899999999972799099837756255899999
No 85
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.87 E-value=31 Score=14.30 Aligned_cols=75 Identities=11% Similarity=-0.023 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-----HHHHH-HHHHHHCCCCEEEE
Q ss_conf 8999998997310024341288887899999999999779881130899738989-----99999-99997248973786
Q gi|254780455|r 278 TDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLD-----VDSII-YTYKHFENRVQMIF 351 (418)
Q Consensus 278 ~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld-----~e~i~-~l~~~~~~~~~~~f 351 (418)
-..|.+.+.+.-+...|+-.=+|--..+.++.++.+++.|.. .+.++..+.+- .+... .+.+ ....-.|
T Consensus 39 ~e~~~~~a~e~~ad~i~vSsl~g~~~~~~~~l~~~L~e~G~~--di~vvvGG~i~i~~~d~~~~~~~l~~---~Gv~~vF 113 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLK--DILLYVGGNLVVGKQDFEDVEKRFKE---MGFDRVF 113 (128)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC--CCEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEE
T ss_conf 999999998739999998232025624899999999967999--99899789867783104899999996---6968574
Q ss_pred EECCCC
Q ss_conf 334643
Q gi|254780455|r 352 GWGTNL 357 (418)
Q Consensus 352 GIGT~L 357 (418)
|=||.+
T Consensus 114 ~pGt~~ 119 (128)
T cd02072 114 APGTPP 119 (128)
T ss_pred CCCCCH
T ss_conf 998799
No 86
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=33.54 E-value=31 Score=14.27 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=9.4
Q ss_pred EEECCCCCHHHHHHHHH
Q ss_conf 99738989999999999
Q gi|254780455|r 325 LVFSDNLDVDSIIYTYK 341 (418)
Q Consensus 325 iv~Sd~Ld~e~i~~l~~ 341 (418)
|+.-.+++.+.+.-+.-
T Consensus 234 i~vl~~~~~~~~lPll~ 250 (384)
T pfam03599 234 ILILRGDDIWELMPVLT 250 (384)
T ss_pred EEEECCCCHHHHHHHHH
T ss_conf 89973798888605899
No 87
>TIGR01907 cas_Cse3 CRISPR-associated protein, Cse3 family; InterPro: IPR010179 CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by CT1974 from Chlorobium tepidum, is found in a minority of Cas regions..
Probab=33.26 E-value=19 Score=15.73 Aligned_cols=27 Identities=30% Similarity=0.785 Sum_probs=22.1
Q ss_pred CC-CCHHHHCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 71-001244011789999999998489965
Q gi|254780455|r 9 DP-IISSLLDTDFYKILMLQLIWKFYPDIK 37 (418)
Q Consensus 9 ~p-iI~SlLdTD~YkltM~~a~~~~~~~~~ 37 (418)
.| .+..|-+||.|.++ |..|+.||+++
T Consensus 14 ~P~~l~~l~~~~~Y~lH--q~lw~LFp~~~ 41 (246)
T TIGR01907 14 RPADLKKLRSRDSYSLH--QWLWSLFPDVR 41 (246)
T ss_pred CHHHHHHHHHCCCCHHH--HHHHHHCCCCC
T ss_conf 98999987414873122--46543178960
No 88
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=33.03 E-value=31 Score=14.21 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 99999999997798811308997389899999999997
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418)
-++|++++|++.|++... .-+..+.++.+.+.++.+.
T Consensus 11 tcrkA~k~L~~~~i~~~~-~d~~~~p~~~~el~~~~~~ 47 (105)
T cd03035 11 TVKKARKWLEARGVAYTF-HDYRKDGLDAATLERWLAK 47 (105)
T ss_pred HHHHHHHHHHHCCCCCEE-EEEECCCCCHHHHHHHHHH
T ss_conf 899999999987998089-9756789899999999986
No 89
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=31.78 E-value=22 Score=15.27 Aligned_cols=144 Identities=14% Similarity=0.154 Sum_probs=69.8
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 424434797889999999984212120124788999972898767-5204898764001220367865499999999996
Q gi|254780455|r 185 FGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIG-TSAHELPMVAAAITRTDIETQNAPYQMMQQWNRL 263 (418)
Q Consensus 185 FG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~G-TmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~ 263 (418)
||-+.+...- .++..+|..... -++. =+||+=+| |+|-.+.+.|+++. ++.+|..+++..-...
T Consensus 497 ~g~~sa~nLl---~aIe~sK~~pl~------RlL~--aLGIr~VG~~~A~~La~~f~tl~----~L~~A~~e~~~~~~~f 561 (706)
T TIGR00575 497 FGEKSAQNLL---SAIEKSKKKPLA------RLLF--ALGIRHVGEVTAKLLAKHFGTLD----KLKAASLETLESIYQF 561 (706)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHH------HHHH--HCCCHHHHHHHHHHHHHHCCCHH----HHHHCCHHHHHHHHHH
T ss_conf 5568899999---999985210489------9998--62860357999999998558868----9985082167788751
Q ss_pred CCCCCEEEEECCCCH------HHHHH--HHH--------HHHCCC--CEEECCCCCHHH-HHHH---HHHHHHHCCCCCC
Q ss_conf 398865986346898------99999--899--------731002--434128888789-9999---9999997798811
Q gi|254780455|r 264 YDDNLLIVLPDSFGT------DFFLE--HAP--------SWMTQW--KGFRHDSASPIE-GGEK---IIAWWKKMNCNPQ 321 (418)
Q Consensus 264 yp~~~~i~L~DTy~~------~~~l~--~~~--------~~~~~~--~GVR~DSGD~~~-~~~k---~~~~l~~~Gidp~ 321 (418)
=+..+ .. +.-+|- -+|++ ... ....++ .||..+|-|..- +.++ -...-+..+-.-.
T Consensus 562 ~~s~L-~~-~~g~G~~vA~~~~~~F~~~~~~~~qPYRta~~~~~L~~~gv~~~~~D~~~~LL~~~~~~~~~~~~~~~~~~ 639 (706)
T TIGR00575 562 DRSEL-LS-VEGVGPKVAESIVNFFHDPNNLSLQPYRTAELIEKLEELGVNMESEDEFCRLLDQALKEKVEAELAGSPLA 639 (706)
T ss_pred CCHHH-HH-CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 60556-41-01402789999999871200013560468999999988316310113578777642011001000575202
Q ss_pred CEEEEECCCCCH---HHHHHHHHHHCC
Q ss_conf 308997389899---999999997248
Q gi|254780455|r 322 NKFLVFSDNLDV---DSIIYTYKHFEN 345 (418)
Q Consensus 322 ~k~iv~Sd~Ld~---e~i~~l~~~~~~ 345 (418)
.|++|+++.|+- +.+.++.+...+
T Consensus 640 GK~fVlTG~L~~~sR~~a~~~~~~lGg 666 (706)
T TIGR00575 640 GKTFVLTGTLSQMSRDEAKELLEALGG 666 (706)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 776899515688888999999998099
No 90
>pfam08850 DUF1820 Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.
Probab=31.63 E-value=26 Score=14.75 Aligned_cols=27 Identities=7% Similarity=0.258 Sum_probs=21.0
Q ss_pred CCCCCEEEEEEEECCCCEEEEECCCCC
Q ss_conf 773216898575768111673268875
Q gi|254780455|r 372 TEKLQIVCKVTKANDKHAVKLSDDPAK 398 (418)
Q Consensus 372 ~~~l~~VyKlve~~g~P~~KlSd~~~K 398 (418)
.=|+..+.++-|++-+-+.|+|+..++
T Consensus 64 yIPm~~IiRIDeV~k~G~akI~~~~~~ 90 (99)
T pfam08850 64 YIPMHSIIRIDEVEKEGTAKITEAKPK 90 (99)
T ss_pred EEEHHHEEEEEEEHHCCCEEEEECCCC
T ss_conf 842112798765111583456405799
No 91
>pfam03960 ArsC ArsC family. This family is related to glutaredoxins pfam00462.
Probab=31.56 E-value=33 Score=14.05 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 9999999999779881130899738989999999999724
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE 344 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~ 344 (418)
-+++++++|++.|+++.- .-+..+.++.+.+..+.+...
T Consensus 8 t~rka~~~L~~~~i~~~~-~d~~~~p~s~~el~~~l~~~~ 46 (111)
T pfam03960 8 TCRKALAWLEEHGIEYQE-IDYLETPPSKEELKDILSKTG 46 (111)
T ss_pred HHHHHHHHHHHCCCCEEE-EECCCCCCCHHHHHHHHHHCC
T ss_conf 999999999987998089-732467999999999999839
No 92
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=30.56 E-value=34 Score=13.94 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCCCCE-EEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
Q ss_conf 999999996398865-98634689899999899731002434128888789999999
Q gi|254780455|r 255 QMMQQWNRLYDDNLL-IVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKII 310 (418)
Q Consensus 255 ~a~~~~~~~yp~~~~-i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~ 310 (418)
+-|+...++=|+.-+ +-|+|... ..++.-.-++..+.|-|.|.|++.-|.+-.+
T Consensus 223 ~IF~~L~~~~p~~~GEiqLTDAi~--~l~~~~~v~~~~~~G~r~D~G~~~gyl~A~i 277 (302)
T PRK13389 223 DIWPLLAKTPPGAGDEIQLTDAID--MLIEKETVEAYHMKGKSHDCGNKLGYMQAFV 277 (302)
T ss_pred HHHHHHHCCCCCCCCCEEHHHHHH--HHHHHCCEEEEEEEEEEECCCCCCHHHHHHH
T ss_conf 999999607999998084999999--9984297699996557978768013799999
No 93
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=30.51 E-value=35 Score=13.94 Aligned_cols=38 Identities=5% Similarity=0.055 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999999999977988113089973898999999999972
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418)
-+++++++|++.|++..- .-+..+.++.+.+..+.+..
T Consensus 11 t~rka~~~L~~~~i~~~~-id~~k~plt~~eL~~~l~~~ 48 (111)
T cd03036 11 TCRKAKKWLDEHGVDYTA-IDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred HHHHHHHHHHHCCCCEEE-EECCCCCCCHHHHHHHHHHH
T ss_conf 899999999985998399-96147795999999999994
No 94
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.23 E-value=35 Score=13.91 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=6.3
Q ss_pred HHHHHCCCCCCC
Q ss_conf 999972898767
Q gi|254780455|r 218 LLAMNYKINAIG 229 (418)
Q Consensus 218 ~aa~~~gi~~~G 229 (418)
+.|.++|++|.=
T Consensus 156 ~la~~l~v~~~~ 167 (312)
T cd05293 156 LIAERLGVAPSS 167 (312)
T ss_pred HHHHHHCCCHHH
T ss_conf 999996989443
No 95
>cd03586 Pol_IV_kappa Pol_IV_kappa, a member of the Y-family of DNA polymerases. Pol_Y's can transverse replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at the cost of an elevated error rate. The Y-family has no 3'-5' exonuclease activity. In addition to possessing a topology akin to a right hand, with "thumb", "fingers" and "palm" motifs, like polymerases from the A-, B-, C- and X-families, the Y-family has a unique "little finger" motif. Expression of Y-family polymerases is often induced by DNA damage. These polymerases are phylogenetically unrelated to classical DNA polymerases. Originally called the DinB family, they belong to the recently described Y-family of DNA polymerases. Pol IV is mostly found in bacteria and archaea. Although the structure of Pol IV is similar to that of Pol eta, it shows markedly differenct efficiencies and fidelities in bypassing various DNA lesions. All Pol IV-like polymerases studied to date are able to b
Probab=30.23 E-value=35 Score=13.90 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=13.6
Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCEEEEEECC
Q ss_conf 98899997508998416873399269998548
Q gi|254780455|r 93 EPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGL 124 (418)
Q Consensus 93 ~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp 124 (418)
...+.+.|+.+ ++.+....=.|-.+.+++.
T Consensus 79 S~~i~~il~~~--~~~ve~~SIDE~flDlt~~ 108 (337)
T cd03586 79 SAQIMEILREY--TPLIEPLSIDEAYLDVTGS 108 (337)
T ss_pred HHHHHHHHHHH--CCCEEECCCCCEEEECCCC
T ss_conf 99999999973--9846774577248974542
No 96
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.16 E-value=35 Score=13.90 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=91.8
Q ss_pred EEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 68733992699985487786778889999998888877531348667999999999999987776742699759984244
Q gi|254780455|r 109 DLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTR 188 (418)
Q Consensus 109 ~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~R 188 (418)
.-.+.+|+++++++||-......|=..||++..+...+|.. .++..++ ...+.++ ..||
T Consensus 74 G~~v~~g~~i~~i~G~a~~iL~~ER~aLN~l~~lSGIAT~T---------------~~~v~~~----~~~~~~i--~~TR 132 (281)
T PRK06543 74 GERFEAGDILATVTGSARSILTAERIALNFTQRMSGIATLT---------------AAFVDAV----NGTRARI--VDTR 132 (281)
T ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH----CCCCCEE--EEEC
T ss_conf 98817998999997368999998999999999999999999---------------9999984----3899889--8604
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCC----CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 34797889999999984212120124788999972898----76752048987640012203678654999999999963
Q gi|254780455|r 189 RRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKIN----AIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLY 264 (418)
Q Consensus 189 R~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~----~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~y 264 (418)
--.+-. -.... .|...||. .| +++|+. ..- -| +-+++... .+-..+...+-+..
T Consensus 133 KT~PGl-R~l~k---~AV~~GGg---~n----HR~~Lsd~iLIKd--NH--i~~~~g~~-------~~~~~~i~~~r~~~ 190 (281)
T PRK06543 133 KTTPGL-RIFER---YAVRCGGG---HN----HRYSLSDAVMVKD--NH--LAALAAQG-------LSLTEALRHVRAQL 190 (281)
T ss_pred CCCCCH-HHHHH---HHHHHCCC---CC----CCCCCCCEEEEEH--HH--HHHHCCCC-------HHHHHHHHHHHHHC
T ss_conf 788654-89999---99994684---56----6788775288706--46--98854760-------78999999999758
Q ss_pred CCCCEE-EEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 988659-863468989999989973100243412888878999999999997798811308997389899999999997
Q gi|254780455|r 265 DDNLLI-VLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342 (418)
Q Consensus 265 p~~~~i-~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418)
|...-| .=+||.. .+ ......+.+.|-+|--+|....+ +.+.. +++ ..+-+|+|+|.+.+.+.-+.
T Consensus 191 ~~~~~IeVEv~~l~--~~---~~a~~~g~D~ImLDnms~~~i~~-av~~i-----~~~-~~lEaSGgI~~~ni~~yA~t 257 (281)
T PRK06543 191 GHTTHVEVEVDRLD--QI---EPVLAAGVDTIMLDNFTLDQLRE-GVELI-----DGR-AIVEASGNVSLNTVPAIAST 257 (281)
T ss_pred CCCCEEEEEECCHH--HH---HHHHHCCCCEEEECCCCHHHHHH-HHHHH-----CCC-EEEEEECCCCHHHHHHHHHC
T ss_conf 99870999966788--79---99997499999977989999999-99975-----793-79999889999999999973
No 97
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=29.84 E-value=12 Score=17.18 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=28.4
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 43412888878999999999997798811-308997389899999999997248973786334643
Q gi|254780455|r 293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
-|||+|||-- ...++-.. +||. .|.|+.+.+-+ +.+..+...... . .+.||-||+
T Consensus 362 ~gvRvDt~~~--~G~~v~~~-----YDsmlaKlI~~g~~R~-~Ai~rl~~AL~e-~-~I~Gv~TN~ 417 (449)
T PRK08591 362 PGVRVDSHVY--TGYTIPPY-----YDSMIGKLIVHGETRE-EAIARMKRALSE-F-VIDGIKTTI 417 (449)
T ss_pred CCEEEECCCC--CCCEECCC-----CCCHHCEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf 9889958815--68984887-----4553203889789999-999999999736-6-997966869
No 98
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=29.74 E-value=36 Score=13.85 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 89999989973100243412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r 278 TDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 278 ~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
-+.+.+.+.+.-....|+=.=+|.-..+.++.++.+++.|.+ ...++..+-+-.+....|.+. | ..-.||=||.+
T Consensus 39 ~eeiv~~A~~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~--di~v~vGG~Ip~~d~~~l~~~--G-v~~vf~pgt~~ 113 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAG--DILVVGGGIIPPEDYELLKEM--G-VAEIFGPGTSI 113 (122)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC--CCEEEEECCCCHHHHHHHHHC--C-CCEEECCCCCH
T ss_conf 999999999739989999646554478999999999976999--846999456498999999977--9-98898958899
No 99
>pfam05985 EutC Ethanolamine ammonia-lyase light chain (EutC). This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) EC:4.3.1.7 sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia.
Probab=29.65 E-value=36 Score=13.84 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=20.7
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
Q ss_conf 41288887899999999999779881130899738989999
Q gi|254780455|r 295 FRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDS 335 (418)
Q Consensus 295 VR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~ 335 (418)
-|.|.|- .++.+.++.+++..-.+-+..||.||||.-..
T Consensus 79 ~RPDlGR--~Ls~~s~~~L~~~~~~~~Dv~iVvaDGLSa~A 117 (237)
T pfam05985 79 QRPDLGR--RLDDESLARLKAKCVKGPDVQIVIADGLSARA 117 (237)
T ss_pred CCCCCCC--CCCHHHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf 6998878--78989999998635899988999758889899
No 100
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=29.47 E-value=36 Score=13.82 Aligned_cols=12 Identities=8% Similarity=0.296 Sum_probs=6.2
Q ss_pred HHHHHCCCCCCC
Q ss_conf 999972898767
Q gi|254780455|r 218 LLAMNYKINAIG 229 (418)
Q Consensus 218 ~aa~~~gi~~~G 229 (418)
..|.++|++|.-
T Consensus 157 ~la~~l~v~~~~ 168 (309)
T cd05294 157 AIAKHFNVHISE 168 (309)
T ss_pred HHHHHHCCCHHH
T ss_conf 999996949667
No 101
>KOG3153 consensus
Probab=29.36 E-value=36 Score=13.81 Aligned_cols=10 Identities=10% Similarity=0.126 Sum_probs=3.5
Q ss_pred EEECCCCCCC
Q ss_conf 6334643146
Q gi|254780455|r 351 FGWGTNLTND 360 (418)
Q Consensus 351 fGIGT~Lt~d 360 (418)
.-|-..+||+
T Consensus 180 ~~v~~~~~~~ 189 (250)
T KOG3153 180 LHVNLGMTGK 189 (250)
T ss_pred ECCCCCCCCC
T ss_conf 2566654567
No 102
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN; InterPro: IPR011975 This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardized in . This enzyme is related to aldehyde dehydrogenase family. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate entry, IPR011966 from INTERPRO..
Probab=28.38 E-value=37 Score=13.69 Aligned_cols=110 Identities=13% Similarity=-0.001 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH----HHHH--CCCC-----------------------CEEEEEC-
Q ss_conf 98767520489876400122036786549999999----9996--3988-----------------------6598634-
Q gi|254780455|r 225 INAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQ----WNRL--YDDN-----------------------LLIVLPD- 274 (418)
Q Consensus 225 i~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~----~~~~--yp~~-----------------------~~i~L~D- 274 (418)
.-+.=|..=.|||+||+-++ |+|=.-+++ |.+. -|+. -||.||=
T Consensus 133 hAVmhTtGQAFMMAFQAGGp------HAQDRGlEAvAYAy~em~~iP~~A~W~KPQGK~DPL~l~KrF~~VPRGiaLViG 206 (560)
T TIGR02288 133 HAVMHTTGQAFMMAFQAGGP------HAQDRGLEAVAYAYREMSRIPETAVWEKPQGKRDPLKLEKRFTIVPRGIALVIG 206 (560)
T ss_pred HHHHHCCCHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEECCCEEEEEE
T ss_conf 88841123578988764786------511323689999999963277764630775424754454553550685057761
Q ss_pred --CCCHHHHHHH-HHHHHCC-CCEEECCCCC--HHHHHHHH-HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf --6898999998-9973100-2434128888--78999999-99999779881130899738989999999999
Q gi|254780455|r 275 --SFGTDFFLEH-APSWMTQ-WKGFRHDSAS--PIEGGEKI-IAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYK 341 (418)
Q Consensus 275 --Ty~~~~~l~~-~~~~~~~-~~GVR~DSGD--~~~~~~k~-~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~ 341 (418)
||=|||..-- |-.++.. ..=|..--|= |..++.|+ |+-|-++|+||.=+.+++.+ =.++....|--
T Consensus 207 C~TFPTWNtYPGLFASLATGN~VlVKpHp~AiLP~AltV~vAreVL~EaGfDP~lV~Laa~~-p~~~~Aq~LAl 279 (560)
T TIGR02288 207 CSTFPTWNTYPGLFASLATGNPVLVKPHPGAILPLALTVQVAREVLGEAGFDPNLVALAAED-PGEEVAQRLAL 279 (560)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCC-CCCHHHHHHHC
T ss_conf 47888756754689998638935635888620026788899999987416773020011258-88437888513
No 103
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=28.34 E-value=38 Score=13.69 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=51.6
Q ss_pred EECCCCHHHHHHHHHHHHCCCCEEECCCCCHH----HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 63468989999989973100243412888878----99999999999779881130899738989999999999724897
Q gi|254780455|r 272 LPDSFGTDFFLEHAPSWMTQWKGFRHDSASPI----EGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRV 347 (418)
Q Consensus 272 L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~----~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~ 347 (418)
|.+.++.+.|.+.+...-...+.+=+|-.-.+ .++.+ .|=.+||+|..+ .++|+++.+..|++....-.
T Consensus 148 l~~~~~~~~~~~~l~~~~~~IK~~LlDQ~~iaGIGNiyadE---iLf~a~I~P~~~----~~~Ls~~e~~~L~~~i~~vL 220 (283)
T PRK13945 148 FSPEFNVEYLKKKLKGRTRSIKTALLDQSIVAGIGNIYADE---SLFKAGIRPTTE----AGTLKKNQLERLREAIVEVL 220 (283)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCEECCCCHHHHHH---HHHHCCCCCCCC----CCCCCHHHHHHHHHHHHHHH
T ss_conf 12326899999887526754351775188523454999999---999859997786----03089999999999999999
Q ss_pred EEEEEE-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEE
Q ss_conf 378633-4643146566666655677732168985757681116
Q gi|254780455|r 348 QMIFGW-GTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAV 390 (418)
Q Consensus 348 ~~~fGI-GT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~ 390 (418)
..+..- ||.+ .|+....+..+.-+..+ -||. -+|+||-
T Consensus 221 ~~ai~~ggtt~-~d~~~~~g~~g~~~~~~-~Vy~---r~g~~C~ 259 (283)
T PRK13945 221 KTSIGAGGTTF-SDFRDLEGVNGNYGGQA-WVYR---RTGQPCR 259 (283)
T ss_pred HHHHHCCCCCC-CCCCCCCCCCCCCCCEE-EEEC---CCCCCCC
T ss_conf 99998489845-01347778768877538-8967---8989489
No 104
>pfam02785 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=28.09 E-value=2.4 Score=21.86 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=26.4
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 43412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r 293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
.|||+|||- +-..++-..||.+- .|.|+.+.+-. +.+.++.....+- ...||-||+
T Consensus 29 ~gvRvDt~v--~~G~~v~~~YDsml----AKvI~~g~~R~-~Ai~kl~~aL~~~--~I~Gv~TN~ 84 (107)
T pfam02785 29 PGVRVDSGV--YEGDEVSPYYDSMI----AKLIVHGPDRE-EAIARLRRALAET--RIEGVKTNI 84 (107)
T ss_pred CCEEEECCE--ECCCCCCCCCCHHH----HHHHHCCCCHH-HHHHHHHHHHHHH--EECCCCCCH
T ss_conf 998987485--15983584403699----99997089999-9999999999976--506856449
No 105
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=28.05 E-value=38 Score=13.66 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=6.6
Q ss_pred HHHHHCCCCCCC
Q ss_conf 999972898767
Q gi|254780455|r 218 LLAMNYKINAIG 229 (418)
Q Consensus 218 ~aa~~~gi~~~G 229 (418)
..|.++|++|.-
T Consensus 151 ~la~~l~v~~~~ 162 (300)
T cd00300 151 LLAEKLDVDPQS 162 (300)
T ss_pred HHHHHHCCCCCC
T ss_conf 998761989000
No 106
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=27.08 E-value=36 Score=13.81 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=7.3
Q ss_pred CCCEEEEECCCC
Q ss_conf 997599842443
Q gi|254780455|r 178 SGLKIVDFGTRR 189 (418)
Q Consensus 178 ~~~~l~eFG~RR 189 (418)
+|.+|+|-|+=.
T Consensus 84 ~G~~vLDVGCGG 95 (275)
T TIGR01983 84 SGLRVLDVGCGG 95 (275)
T ss_pred CCCEEEEECCCH
T ss_conf 897799842785
No 107
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=27.04 E-value=39 Score=13.54 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHHC----CCC--CEEEEECCCCHH
Q ss_conf 99999999963----988--659863468989
Q gi|254780455|r 254 YQMMQQWNRLY----DDN--LLIVLPDSFGTD 279 (418)
Q Consensus 254 ~~a~~~~~~~y----p~~--~~i~L~DTy~~~ 279 (418)
.+.|++.+... |++ +.++|+.-||+.
T Consensus 8 ~~~f~~ivRI~gtdi~g~K~v~~aLt~I~GIG 39 (154)
T PTZ00134 8 SDQFQHILRILNTNVDGREKVTIALTAIKGIG 39 (154)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCC
T ss_conf 78833515403875899958899853220648
No 108
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.79 E-value=40 Score=13.51 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=5.5
Q ss_pred HHHHHCCCCC
Q ss_conf 9999728987
Q gi|254780455|r 218 LLAMNYKINA 227 (418)
Q Consensus 218 ~aa~~~gi~~ 227 (418)
.+|.+++++|
T Consensus 155 ~la~~l~v~~ 164 (307)
T cd05290 155 IVADKYGVDP 164 (307)
T ss_pred HHHHHHCCCC
T ss_conf 9999849993
No 109
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.68 E-value=40 Score=13.49 Aligned_cols=75 Identities=12% Similarity=-0.045 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC------CHHHHHHHHHHHCCCCEEEE
Q ss_conf 899999899731002434128888789999999999977988113089973898------99999999997248973786
Q gi|254780455|r 278 TDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNL------DVDSIIYTYKHFENRVQMIF 351 (418)
Q Consensus 278 ~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~L------d~e~i~~l~~~~~~~~~~~f 351 (418)
-+.|.+.+.+.-+...|+=.=||--..+.++.++.+++.|.. .+.++..+.+ -++....|.+ ....-.|
T Consensus 43 pe~~v~~A~~~~ad~igiSsl~G~~~~~~~~l~~~l~~~g~~--di~vvvGG~i~i~~~dp~~~~~~L~~---~Gv~~VF 117 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLG--DILLYVGGNLVVGKHDFEEVEKKFKE---MGFDRVF 117 (137)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCHHHHHHHHH---CCCCEEE
T ss_conf 999999998739999997111126612799999999967999--99699836216788783999999997---7979887
Q ss_pred EECCCC
Q ss_conf 334643
Q gi|254780455|r 352 GWGTNL 357 (418)
Q Consensus 352 GIGT~L 357 (418)
|-||.+
T Consensus 118 ~pGT~~ 123 (137)
T PRK02261 118 APGTDL 123 (137)
T ss_pred CCCCCH
T ss_conf 978899
No 110
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=26.57 E-value=40 Score=13.48 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=8.2
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999998489965999
Q gi|254780455|r 25 MLQLIWKFYPDIKVTF 40 (418)
Q Consensus 25 M~~a~~~~~~~~~v~f 40 (418)
|...+-...|+.-++|
T Consensus 34 ~r~~l~~~~PDvvVv~ 49 (313)
T PRK13370 34 ARERVAAFDPELVVLF 49 (313)
T ss_pred HHHHHHHHCCCEEEEE
T ss_conf 9999998299989998
No 111
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=26.45 E-value=40 Score=13.47 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=31.4
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH
Q ss_conf 34128888789999999999977988113089973898999
Q gi|254780455|r 294 GFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVD 334 (418)
Q Consensus 294 GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e 334 (418)
-||.+-|-|..-..+..+.|.+.|++ ..|+|||+.++
T Consensus 323 ~i~~g~g~ly~~v~~~~~~l~~~~~~----~~iasng~~~y 359 (459)
T PRK06698 323 NIKSGKGALYPNVKEIFTYIKENNCS----IYIASNGLTEY 359 (459)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCC----EEEECCCHHHH
T ss_conf 98658986464799999999974996----79964856999
No 112
>pfam09822 ABC_transp_aux ABC-type uncharacterized transport system. This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=26.34 E-value=41 Score=13.45 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCHH--HH-------HHHHHHHHCCCCEEECCCC
Q ss_conf 654999999999963988659863468989--99-------9989973100243412888
Q gi|254780455|r 250 QNAPYQMMQQWNRLYDDNLLIVLPDSFGTD--FF-------LEHAPSWMTQWKGFRHDSA 300 (418)
Q Consensus 250 ~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~--~~-------l~~~~~~~~~~~GVR~DSG 300 (418)
-+.+..+++.|+. .|+..+.+.|.+... .. ..++..++..| |||++++
T Consensus 206 s~~e~~~ldqyl~--~GG~ll~~~dp~~~~~~~~~~~~~~~~~~L~~lL~~~-Gi~~~~~ 262 (266)
T pfam09822 206 SEQELYALDQYLM--RGGKLLVFLDPVSVDLDSLLATGGKRDSGLEDLLESY-GVRLNPG 262 (266)
T ss_pred CHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH-CCCCCCC
T ss_conf 9999999999998--6995999977765554321134676679859999980-9630788
No 113
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=26.33 E-value=41 Score=13.45 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=6.6
Q ss_pred CCCC--CCCCCHHHH
Q ss_conf 8987--675204898
Q gi|254780455|r 224 KINA--IGTSAHELP 236 (418)
Q Consensus 224 gi~~--~GTmaHs~v 236 (418)
|+|. ..++-|||.
T Consensus 121 gl~~~~~~~ryHS~~ 135 (221)
T PRK07765 121 GLPDPFTATRYHSLT 135 (221)
T ss_pred CCCCCEEEEEEEEEE
T ss_conf 899974788742189
No 114
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.94 E-value=41 Score=13.41 Aligned_cols=14 Identities=21% Similarity=0.005 Sum_probs=8.4
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 47889999728987
Q gi|254780455|r 214 TSNALLAMNYKINA 227 (418)
Q Consensus 214 TSNv~aa~~~gi~~ 227 (418)
||-.-++-..|+|.
T Consensus 118 sa~~Aaaa~~GiPL 131 (253)
T PRK06136 118 TAAIAAAAAAGIPL 131 (253)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 59999999839885
No 115
>pfam03445 DUF294 Putative nucleotidyltransferase DUF294. This domain is found associated with pfam00571. This region is uncharacterized, however it seems to be similar to pfam01909, conserving the DXD motif. This strongly suggests that members of this family are also nucleotidyltransferases (Bateman A pers. obs.).
Probab=25.68 E-value=42 Score=13.37 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=6.0
Q ss_pred CCEEEEECCCCCC
Q ss_conf 9759984244347
Q gi|254780455|r 179 GLKIVDFGTRRRH 191 (418)
Q Consensus 179 ~~~l~eFG~RR~~ 191 (418)
++-++-||+=.|.
T Consensus 49 ~~a~l~mGS~GR~ 61 (168)
T pfam03445 49 PFAWLVMGSEGRG 61 (168)
T ss_pred CEEEEEECCCCCC
T ss_conf 9788865566456
No 116
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,. 10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=25.32 E-value=25 Score=14.93 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=47.8
Q ss_pred HHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC------CCCH
Q ss_conf 4212120124788999972898767520489876400122036786549999999999639886598634------6898
Q gi|254780455|r 205 EGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPD------SFGT 278 (418)
Q Consensus 205 aa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~D------Ty~~ 278 (418)
-+++..|.|--=..=|+.-|.+.||..|| |-+. + + |.++ |.-=| ||+.
T Consensus 204 HSFLPAFiGA~PY~rA~eRGVKiIGATAH-----YVt~----------~---L-------DeGP-IIeQDv~rVdH~~~~ 257 (294)
T TIGR00655 204 HSFLPAFIGANPYQRAYERGVKIIGATAH-----YVTE----------E---L-------DEGP-IIEQDVVRVDHTDNV 257 (294)
T ss_pred CCCCCCCCCCCCHHHHHCCCCEEEECCEE-----EECC----------C---C-------CCCC-CEEECCEEECCCCCH
T ss_conf 35245544676237887088337702001-----0033----------5---7-------8889-025330452766777
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 9999989973100243412888878999999999997798811308997
Q gi|254780455|r 279 DFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVF 327 (418)
Q Consensus 279 ~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~ 327 (418)
+.+.+.-...-. .-||+-+.++|.+.=+=..+|+|||
T Consensus 258 e~l~r~GrDiEk------------~VLaRAv~~hL~dRv~Vy~NkTvVF 294 (294)
T TIGR00655 258 EDLIRAGRDIEK------------VVLARAVKLHLEDRVLVYENKTVVF 294 (294)
T ss_pred HHHHHCCCCHHH------------HHHHHHHHHHHCCCEEEECCEEEEC
T ss_conf 899860675126------------7899999998328178877835749
No 117
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=24.53 E-value=26 Score=14.76 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 56567100124401178999999999848996599999965887554400002369999999971699989999998377
Q gi|254780455|r 5 FSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENS 84 (418)
Q Consensus 5 ~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~ 84 (418)
+..+-|||.|-.||=- +-.|+-+.-+++= --+..|+.+ +++|.+.++..+=. |--+.. ..
T Consensus 38 i~L~iPivSS~MDTVT-e~~MAiamA~~GG-----lGVIHrn~s-----------ie~Q~~~V~~VKr~--e~g~i~-~P 97 (486)
T PRK05567 38 IRLNIPLLSAAMDTVT-EARLAIAMAQEGG-----IGVIHKNMS-----------IEEQAEEVRKVKRS--ESGVVT-DP 97 (486)
T ss_pred CCCCCCEEECCCCCCC-CHHHHHHHHHCCC-----EEEECCCCC-----------HHHHHHHHHHHHHH--HCCCCC-CC
T ss_conf 1328877867876657-8999999998898-----799989999-----------99999999999753--067137-98
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEE
Q ss_conf 7555557898899997508998416873399269
Q gi|254780455|r 85 FYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYV 118 (418)
Q Consensus 85 ~~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~ 118 (418)
...+...--.+-++....+++++..+...+|.++
T Consensus 98 ~tl~P~~tv~d~~~l~~~~~~sg~PVv~~~~kL~ 131 (486)
T PRK05567 98 VTVTPDTTLAEALALMARYGISGVPVVDEEGKLV 131 (486)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEE
T ss_conf 6768988899999999972878614876799478
No 118
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=24.36 E-value=44 Score=13.21 Aligned_cols=64 Identities=8% Similarity=0.083 Sum_probs=34.5
Q ss_pred CCEEECCCCCHHHHHHHH-HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC--CCC-EEEEEECCCC
Q ss_conf 243412888878999999-99999779881130899738989999999999724--897-3786334643
Q gi|254780455|r 292 WKGFRHDSASPIEGGEKI-IAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE--NRV-QMIFGWGTNL 357 (418)
Q Consensus 292 ~~GVR~DSGD~~~~~~k~-~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~--~~~-~~~fGIGT~L 357 (418)
|.|+..|+.+ ....-+ ...++..++++......-++..|+..+.+..+... |.+ ...-|||.+=
T Consensus 69 y~glp~~~~~--S~~~~l~~~l~~~v~i~~~~~~~~~~~~~~e~ec~~~~~~I~~~ggiDl~lLGiG~nG 136 (236)
T PRK09762 69 WVDLPLTMPG--TCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNG 136 (236)
T ss_pred ECCCCCCCCH--HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 5488898604--2899999972454699799876999886559999999999986089768995257786
No 119
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase; InterPro: IPR005960 This entry represents the small, monomeric form of phenylalanine-4-hydroxylase (PAH; 1.14.16.1 from EC), as found in a certain Gram-negative bacteria. The enzyme is biopterin and metal dependent, and acts to irreversibly convert phenylalanine to tyrosine, the rate-limiting step in phenylalanine catabolism in some systems: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + dihydrobiopterin + H2O The structure of PAH from Colwellia psychrerythraea (strain 34H / ATCC BAA-681), which binds tetrahydrobiopterin (BH4) as cofactor, is a cold-active form of the enzyme that has increased stability and flexibility around the active site . More information about these proteins can be found at Protein of the Month: Phenylalanine Hydroxylase .; GO: 0004505 phenylalanine 4-monooxygenase activity, 0006559 L-phenylalanine catabolic process.
Probab=24.08 E-value=44 Score=13.20 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHCCCCCCEE
Q ss_conf 78988999975089984168
Q gi|254780455|r 91 LFEPKFLSWLSDFQLPEYDL 110 (418)
Q Consensus 91 ~~~~~fl~~L~~~~f~~~~~ 110 (418)
+....|+|.|.+-|||.-.+
T Consensus 77 IP~~~FFehLAnrrFPVt~w 96 (251)
T TIGR01267 77 IPADVFFEHLANRRFPVTTW 96 (251)
T ss_pred CCCHHHHHHHHCCCCCCCCC
T ss_conf 88504568763478864221
No 120
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=23.89 E-value=35 Score=13.89 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=18.0
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 656710012440117899999999984899659999996588
Q gi|254780455|r 6 STSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQT 47 (418)
Q Consensus 6 ~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~ 47 (418)
..+=|||.|-.||=- +-.|+-+.=+++= --+..|+.
T Consensus 47 ~L~iPivSs~MDTVT-e~~MAiamA~~GG-----iGVIHrn~ 82 (499)
T PTZ00314 47 RLHIPIVSSPMDTVT-EHKMAIAMALMGG-----IGVIHNNC 82 (499)
T ss_pred EECCCEEECCCCCCC-CHHHHHHHHHCCC-----EEEECCCC
T ss_conf 207877967887656-8999999997798-----69987999
No 121
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=23.69 E-value=45 Score=13.13 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=6.6
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 9999728987675
Q gi|254780455|r 218 LLAMNYKINAIGT 230 (418)
Q Consensus 218 ~aa~~~gi~~~GT 230 (418)
..|.+++++|.--
T Consensus 158 ~la~~l~v~~~~V 170 (315)
T PRK00066 158 MLAEKLDVDPRSV 170 (315)
T ss_pred HHHHHHCCCCCCC
T ss_conf 9999849993031
No 122
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=23.63 E-value=20 Score=15.63 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=30.6
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 43412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r 293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
.|||+|||- +...++-..||.+- .|.|+.+.+-+ +.+..+...... . ..-||-|++
T Consensus 363 ~gvRvD~~v--~~G~~v~~~yDsml----aKli~~g~~R~-~Ai~r~~rAL~e-~-~I~Gv~Tni 418 (497)
T PRK08654 363 PGVRVDSGV--HMGYTIPPYYDSMI----SKLIVWGRTRE-EAIARMKRALYE-Y-IILGVKTNI 418 (497)
T ss_pred CCEEEECCC--CCCCCCCCCCCCHH----CEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf 988996456--46897388654333----03679889999-999999999854-6-998954879
No 123
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=23.59 E-value=46 Score=13.11 Aligned_cols=71 Identities=10% Similarity=-0.080 Sum_probs=45.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCC---EEECC--CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 865986346898999998997310024---34128--8887899999999999779881130899738989999999999
Q gi|254780455|r 267 NLLIVLPDSFGTDFFLEHAPSWMTQWK---GFRHD--SASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYK 341 (418)
Q Consensus 267 ~~~i~L~DTy~~~~~l~~~~~~~~~~~---GVR~D--SGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~ 341 (418)
+..+..+=.|+..+.+-.+. .++.|. -=|+| .+|+.....++++.++..|. .+|.+++|= =+.+.+.++.+
T Consensus 103 gi~vn~Tavys~~Qa~~Aa~-aGA~YvsPyvGR~~d~G~Dg~~~i~~i~~~~~~~~~--~tkILaASi-R~~~~v~~a~~ 178 (220)
T PRK12655 103 GIPTLGTAVYSAAQGLLAAL-AGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAP--ESMVLAASF-KTPRQALDCLL 178 (220)
T ss_pred CCCEEEEECCCHHHHHHHHH-CCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHCCC--CCEEEEEEC-CCHHHHHHHHH
T ss_conf 99789985178999999998-599789632105755589848999999999997599--968999838-99999999998
No 124
>KOG1710 consensus
Probab=23.34 E-value=46 Score=13.08 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=42.7
Q ss_pred CCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 400002369999999971699989999998377755555789889999750899
Q gi|254780455|r 52 SDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQL 105 (418)
Q Consensus 52 ~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f 105 (418)
...+.|-|-++++.-++| .||.+-++|+.+...+.+.|-.+|...-++..+--
T Consensus 116 aqmAAFVG~H~CV~iINN-~~t~~~leyyt~p~g~~~ep~~Pp~La~~~H~~~t 168 (396)
T KOG1710 116 AQMAAFVGHHECVAIINN-HITIDVLEYYTRPKGYEGEPEYPPELAVFIHSLCT 168 (396)
T ss_pred HHHHHHHCCHHHHHHHHC-CCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999998551179999964-36188998750543457898898799899999871
No 125
>TIGR00875 talC transaldolase, putative; InterPro: IPR004731 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process.
Probab=23.17 E-value=46 Score=13.06 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=25.7
Q ss_pred EECC--CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 4128--88878999999999997798811308997389899999999
Q gi|254780455|r 295 FRHD--SASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYT 339 (418)
Q Consensus 295 VR~D--SGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l 339 (418)
=|+| |||=..+.+++.+.|+-.+++ +..|++|= =.+..+++-
T Consensus 134 gRlDdigg~G~~li~e~~~i~~~h~~~--t~vi~AS~-rhP~hvle~ 177 (216)
T TIGR00875 134 GRLDDIGGDGLKLIEEVKTIFENHALD--TEVIAASV-RHPRHVLEA 177 (216)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCC--CEEEEEEC-CCHHHHHHH
T ss_conf 101312775057899999999730876--42665402-371789999
No 126
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=22.46 E-value=48 Score=12.97 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=37.9
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-EEEEECCCCCCCCCH
Q ss_conf 9973898999999999972489737863346431465666666556777321689857576811-167326887524888
Q gi|254780455|r 325 LVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKH-AVKLSDDPAKTTGDI 403 (418)
Q Consensus 325 iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P-~~KlSd~~~K~tg~~ 403 (418)
++-++.+.++....|.+ .|+.-+++|- .+ |-.|-...+......+| .+|-+..-.| +|=+.-.+.|+
T Consensus 224 ~~~~g~~~~~~~~~l~~--~gaVGdi~g~--ff--D~~G~~~~~~ln~r~ig--l~L~~l~~ip~vI~vAgG~~K~---- 291 (321)
T COG2390 224 LVRSGFIYEEELEALLA--KGAVGDILGR--FF--DANGQPVDTPLNDRVIG--LSLDDLRQIPKVIAVAGGESKA---- 291 (321)
T ss_pred HHHHCCCCHHHHHHHHH--CCCCEECCCC--EE--CCCCCCCCCCCCCCEEC--CCHHHHHCCCCEEEEECCCCCH----
T ss_conf 34426978899999996--7930003066--23--27998855556571643--7788973278389995786028----
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780455|r 404 SEIKRYLK 411 (418)
Q Consensus 404 ~~~~~~~~ 411 (418)
+.++.++|
T Consensus 292 ~AI~aaL~ 299 (321)
T COG2390 292 EAILAALR 299 (321)
T ss_pred HHHHHHHH
T ss_conf 99999984
No 127
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=22.36 E-value=48 Score=12.95 Aligned_cols=21 Identities=10% Similarity=-0.069 Sum_probs=8.9
Q ss_pred HHHHHHCCCCCCEEEECCCCE
Q ss_conf 999750899841687339926
Q gi|254780455|r 97 LSWLSDFQLPEYDLSHKKGQY 117 (418)
Q Consensus 97 l~~L~~~~f~~~~~~~~eg~~ 117 (418)
++.+..++.++.+++--+|.|
T Consensus 36 ~~~i~~~~pd~IiLSpGPg~p 56 (195)
T PRK07649 36 ISDIENMKPDFLMISPGPCSP 56 (195)
T ss_pred HHHHHHCCCCEEEECCCCCCH
T ss_conf 999984198989988999995
No 128
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=22.14 E-value=40 Score=13.52 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 9999999971699989999998377755555789889999750899
Q gi|254780455|r 60 LRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQL 105 (418)
Q Consensus 60 L~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f 105 (418)
-++.|.++..-.+|.|+.+.|.+.....-+....|.|++|.+.+.-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~ 52 (442)
T TIGR03372 7 SAHALHLIEKDTLDHDDMAALNQEVIECFKEHVNPGFLEYRKSVTA 52 (442)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 7998636421668978887889999999983689461256655304
No 129
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.95 E-value=49 Score=12.90 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=22.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 08997389899999999997248973786334643
Q gi|254780455|r 323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 323 k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
..++.++|++.+-+.+-++ ... ..+|||..|
T Consensus 156 ~~~~ptGGV~~~N~~~~l~---aG~-~~vgvGs~l 186 (209)
T PRK06552 156 VNIMVTGGVSLDNVKDWFA---AGA-DAVGIGGEL 186 (209)
T ss_pred CCEEECCCCCHHHHHHHHH---CCC-CEEEECHHH
T ss_conf 9288638999888999998---799-889986577
No 130
>PRK05586 biotin carboxylase; Validated
Probab=21.75 E-value=23 Score=15.18 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=28.8
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 43412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r 293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
.|||+|||-- -..++-..||.+- .|.|+.+.+-+ +.+..+...... . ...||-||+
T Consensus 364 ~gvRvDt~~~--~G~~v~~~yDsll----aK~I~~g~~R~-~Ai~rl~~aL~~-~-~i~Gv~Tni 419 (447)
T PRK05586 364 LGVRLDSAIY--SGYTIPPYYDSMI----GKLIVYGKDRE-EAIQKMKRALGE-F-IIEGVKTNI 419 (447)
T ss_pred CCEEEECCCC--CCCCCCCCCCCHH----CEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf 9889878745--8796488646223----24779889999-999999999843-7-997934879
No 131
>PRK05282 peptidase E; Validated
Probab=21.73 E-value=49 Score=12.87 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEE
Q ss_conf 146566666655677732168
Q gi|254780455|r 358 TNDFDGCTPYQNLQTEKLQIV 378 (418)
Q Consensus 358 t~d~~~~~~~~~~~~~~l~~V 378 (418)
|||++=+.| .+-++||.|
T Consensus 133 TNDMPIv~p---psf~aLglv 150 (233)
T PRK05282 133 TNDMPIVDP---PSFDALNLF 150 (233)
T ss_pred CCCCCCCCC---CCCCCCCCE
T ss_conf 689874379---886632652
No 132
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=21.69 E-value=49 Score=12.86 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 888789999999999977988113089973898
Q gi|254780455|r 299 SASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNL 331 (418)
Q Consensus 299 SGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~L 331 (418)
++|| +++++|++|++.|+. .....|||+..
T Consensus 154 ~~dp--La~~vR~~Lrk~~~~-~gv~vVyS~E~ 183 (231)
T cd00755 154 SGDP--LARKVRKRLRKRGIF-FGVPVVYSTEP 183 (231)
T ss_pred CCCC--HHHHHHHHHHHCCCC-CCEEEEECCCC
T ss_conf 5761--699999999970686-87589974788
No 133
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=21.64 E-value=50 Score=12.86 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=29.3
Q ss_pred EHHHHH-HHHHHC--CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 124788-999972--8987675204898764001220367865499999999996398865986346898
Q gi|254780455|r 212 LGTSNA-LLAMNY--KINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT 278 (418)
Q Consensus 212 ~GTSNv-~aa~~~--gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~ 278 (418)
+-+.+. ..-... ...++||.|++ ++.-+..|.+.|++..-+.| |+-+.
T Consensus 84 IRs~~~v~~ll~~G~~rViiGt~av~------------------~p~~v~~~~~~~g~rivv~l-D~r~g 134 (241)
T COG0106 84 IRSLEDVEALLDAGVARVIIGTAAVK------------------NPDLVKELCEEYGDRIVVAL-DARDG 134 (241)
T ss_pred CCCHHHHHHHHHCCCCEEEEECCEEC------------------CHHHHHHHHHHCCCCEEEEE-ECCCC
T ss_conf 67899999999879988998031216------------------99999999998598289999-71488
No 134
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=21.46 E-value=23 Score=15.16 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=29.8
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 43412888878999999999997798811-308997389899999999997248973786334643
Q gi|254780455|r 293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
.|||+|||--. ..++-.. +||. .|.|+...+ -++.+..+...... . .+-||-||+
T Consensus 364 ~gvRvDs~~~~--G~~v~~~-----yDsmiaKlI~~g~~-R~~Ai~rl~~AL~e-~-~I~Gv~Tni 419 (478)
T PRK08463 364 PSVRVDSHIYK--DYTIPPF-----YDSMLAKLIVKATS-YDLAVNKLERALKE-F-TIEGVRTTI 419 (478)
T ss_pred CCEEEECCCCC--CCCCCCC-----CCHHHCEEEEECCC-HHHHHHHHHHHHHC-C-EEECCCCCH
T ss_conf 99898088678--6980897-----57045348898899-99999999999726-6-998955859
No 135
>pfam09024 consensus
Probab=21.20 E-value=40 Score=13.49 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=38.1
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC--CCHH
Q ss_conf 73898999999999972489737863346431465666666556777321689857576811167326887524--8889
Q gi|254780455|r 327 FSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT--GDIS 404 (418)
Q Consensus 327 ~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t--g~~~ 404 (418)
-|+.+..+.+.+--+-.+.--...-|+.+.|++-- + ...-.++ -.|+-..|...||.++..|+.| |.++
T Consensus 30 ~s~~~~~~~l~~s~qvlKsvfVp~VGwAsQL~sG~-----V---wVQfnDG-SQl~vqagvs~I~Yt~~~G~~trYgend 100 (123)
T pfam09024 30 SSNSHKDDCLPKSAKLLKSIFVKNIGWASQLTSGA-----V---WVQFNDG-SQLMVQAGVSCIIFTSPEGHITRYGENE 100 (123)
T ss_pred CCCCCCCCCCCCHHEEEEEEECCCCEEEEECCCCC-----E---EEEECCC-CEEEEECCCCEEEEECCCCCEEECCCCC
T ss_conf 88645323264222014468517842787516854-----8---9997688-6899954863599988999747747545
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780455|r 405 EIKRYLK 411 (418)
Q Consensus 405 ~~~~~~~ 411 (418)
.+..+.|
T Consensus 101 ~LPe~Ik 107 (123)
T pfam09024 101 KLPDLIK 107 (123)
T ss_pred CCCHHHH
T ss_conf 5519999
No 136
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=21.16 E-value=24 Score=15.07 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=27.3
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 43412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r 293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
.|||+|||--. ..++-..||.+ -.|.|+...+-+ +.+..+...... . ...||-||+
T Consensus 367 ~gvRvDt~v~~--G~~v~~~yDsl----laKlI~~g~~R~-~Ai~rl~~aL~e-~-~I~Gv~TNi 422 (458)
T PRK12833 367 PGVRVDSLLYP--GYAVPPFYDSL----LAKLIVHDESRA-AALARAARALEE-L-RIDGMKTTA 422 (458)
T ss_pred CCEEEECCCCC--CCCCCCCCCCH----HHEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf 98888887027--79748875504----300368889999-999999999844-7-998933879
No 137
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.11 E-value=51 Score=12.79 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 113089973898999999999972489737863346431
Q gi|254780455|r 320 PQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLT 358 (418)
Q Consensus 320 p~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt 358 (418)
|....++.++|++.+-+.+-.+. |. ..+|+|.+|+
T Consensus 149 P~~~~~~ptGGV~~~N~~~~l~a--Ga--~avG~Gs~L~ 183 (206)
T PRK09140 149 PPDVPVFAVGGVTPENLAPYLAA--GA--AGFGLGSALY 183 (206)
T ss_pred CCCCEEEECCCCCHHHHHHHHHC--CC--CEEEECHHCC
T ss_conf 99998995379888889999986--99--1999606515
No 138
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=20.96 E-value=51 Score=12.76 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999999999977988113089973898999999999972
Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418)
Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418)
-+++++++|++.|++..- .-+..+.++.+.+.++.+..
T Consensus 12 t~rkA~~~L~~~~i~~~~-~d~~k~~~s~~el~~~l~~~ 49 (115)
T cd03032 12 SCRKAKQWLEEHQIPFEE-RNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred HHHHHHHHHHHCCCCEEE-EEEECCCCCHHHHHHHHHHC
T ss_conf 999999999986997189-97425896999999999983
No 139
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.90 E-value=51 Score=12.76 Aligned_cols=263 Identities=15% Similarity=0.097 Sum_probs=125.9
Q ss_pred CCCHHHHCCHHHHH--HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf 10012440117899--9999999848996599999965887554400002369999999971699989999998377755
Q gi|254780455|r 10 PIISSLLDTDFYKI--LMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYG 87 (418)
Q Consensus 10 piI~SlLdTD~Ykl--tM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~ 87 (418)
|.+...|.-|.+.- | .+|.+ -++.+++-.++.|.. .|++|+...-..++.+- .+++.
T Consensus 8 ~~v~~~L~ED~g~gDiT-t~al~--~~~~~a~a~i~ake~-------GvvaG~~~a~~~f~~l~---~~i~~-------- 66 (280)
T COG0157 8 DLVDAALLEDLGRGDIT-TEALI--PEDRKAEAVIIAKEA-------GVVAGLDVAEEVFELLG---PSIEI-------- 66 (280)
T ss_pred HHHHHHHHHHCCCCCCC-CCCCC--CCCCEEEEEEEECCC-------CEEECHHHHHHHHHHHC---CCEEE--------
T ss_conf 99999998656787764-52125--789747999997379-------68876799999999809---76689--------
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 55578988999975089984168733992699985487786778889999998888877531348667999999999999
Q gi|254780455|r 88 KKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKL 167 (418)
Q Consensus 88 ~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (418)
...-.+.-.+.+|+.+++++||-.....-|=..||++..+...+| ..+++
T Consensus 67 ---------------~~~~~DG~~v~~g~~i~~~~G~a~~lL~~ER~aLN~L~~lSGIAT---------------~T~~~ 116 (280)
T COG0157 67 ---------------QWLVKDGDRVKPGDVLAEIEGPARALLTAERTALNFLQHLSGIAT---------------ATARM 116 (280)
T ss_pred ---------------EEECCCCCEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_conf ---------------887288888079978999956588899999999999999837999---------------99999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CC-EE---HHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf 98777674269975998424434797889999999984212-12-01---247889999728987675204898764001
Q gi|254780455|r 168 WSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIK-DS-FL---GTSNALLAMNYKINAIGTSAHELPMVAAAI 242 (418)
Q Consensus 168 ~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~-~g-f~---GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~ 242 (418)
.++.... +-++ ..||--.+-. . .+ -++|.. || .. |-|...+=+.=.|...| +|-.
T Consensus 117 V~~~~~~----~~~i--~~TRKT~Pgl--R-~l--eKyAV~~GGG~nHR~gLsDavliKDNHia~~g----~i~~----- 176 (280)
T COG0157 117 VEALRGT----NVRI--ADTRKTTPGL--R-LL--EKYAVRAGGGDNHRFGLSDAVLIKDNHIAAAG----SITE----- 176 (280)
T ss_pred HHHHHCC----CCEE--EECCCCCCCH--H-HH--HHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHC----CHHH-----
T ss_conf 9983246----9689--8616789657--8-99--99999964974213777525776044788753----5999-----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCHHHHHHHH-HHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 220367865499999999996398865-9863468989999989-97310024341288887899999999999779881
Q gi|254780455|r 243 TRTDIETQNAPYQMMQQWNRLYDDNLL-IVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNP 320 (418)
Q Consensus 243 ~~~~~~~~~~~~~a~~~~~~~yp~~~~-i~L~DTy~~~~~l~~~-~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp 320 (418)
|.+.--..-|...- -.=+||. ..+ ....++.+-|=+|--.|.. .+++.+.+ +...
T Consensus 177 -------------Av~~aR~~~~~~~kIEVEvesl------e~~~eAl~agaDiImLDNm~~e~-~~~av~~l---~~~~ 233 (280)
T COG0157 177 -------------AVRRARAAAPFTKKIEVEVESL------EEAEEALEAGADIIMLDNMSPEE-LKEAVKLL---GLAG 233 (280)
T ss_pred -------------HHHHHHHHCCCCCEEEEECCCH------HHHHHHHHCCCCEEEECCCCHHH-HHHHHHHH---CCCC
T ss_conf -------------9999997589986289974999------99999997499999976999999-99999974---4477
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 130899738989999999999724897378633464314656666665567773216898575
Q gi|254780455|r 321 QNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTK 383 (418)
Q Consensus 321 ~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve 383 (418)
...+=+|++++.+.+...-+. .+|.+-+|- | -.+.|.|++-.++..
T Consensus 234 -~~~lEaSGgIt~~ni~~yA~t----GVD~IS~ga-l-----------ths~~~lDisl~~~~ 279 (280)
T COG0157 234 -RALLEASGGITLENIREYAET----GVDVISVGA-L-----------THSAPALDISLDIVR 279 (280)
T ss_pred -CEEEEEECCCCHHHHHHHHHC----CCCEEEECC-C-----------CCCCCCCCEEEEEEC
T ss_conf -669997589787789998626----997998073-3-----------047753324888635
No 140
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=20.80 E-value=20 Score=15.57 Aligned_cols=55 Identities=24% Similarity=0.478 Sum_probs=29.3
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 43412888878999999999997798811-308997389899999999997248973786334643
Q gi|254780455|r 293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 (418)
Q Consensus 293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L 357 (418)
.|||+|||-- -..++-..| ||. .|.|+.+.+-+ +.+..+...... . ..-||-||+
T Consensus 363 ~gvRvDs~~~--~G~~v~~~y-----DsmlaKlI~~g~~R~-~Ai~rl~~aL~e-~-~I~Gv~Tni 418 (449)
T PRK06111 363 EGVRHDHAVE--NGVTVTPFY-----DPMIAKVIAHGETRE-EAIARLHDALEE-L-KVEGIKTNI 418 (449)
T ss_pred CCEEEECCCC--CCCEECCCC-----CCHHHEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf 9888853666--859708875-----653325679879999-999999999851-6-998943859
No 141
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=20.74 E-value=52 Score=12.73 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=16.6
Q ss_pred CCEEECCCCCHH--HHHHHHHHHHHHCCCCCCC
Q ss_conf 243412888878--9999999999977988113
Q gi|254780455|r 292 WKGFRHDSASPI--EGGEKIIAWWKKMNCNPQN 322 (418)
Q Consensus 292 ~~GVR~DSGD~~--~~~~k~~~~l~~~Gidp~~ 322 (418)
+..|-+-.-|++ .+...+...+...++.|..
T Consensus 355 ~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQ 387 (524)
T COG4943 355 HVSINLSASDLASPRLIDRLNRKLAQYQVRPQQ 387 (524)
T ss_pred EEEEEEEEHHHCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 899865302202735889999998751867678
No 142
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.72 E-value=52 Score=12.73 Aligned_cols=24 Identities=4% Similarity=-0.132 Sum_probs=9.6
Q ss_pred EECCCCCHHHH-HHHHHHHHHHCCC
Q ss_conf 41288887899-9999999997798
Q gi|254780455|r 295 FRHDSASPIEG-GEKIIAWWKKMNC 318 (418)
Q Consensus 295 VR~DSGD~~~~-~~k~~~~l~~~Gi 318 (418)
+|+-+|-.+.+ +.++.+.+++.|+
T Consensus 564 ~rIGqgiEFDY~~v~a~~alk~~G~ 588 (1063)
T PRK05294 564 NRIGQGIEFDYCCVHAALALREAGY 588 (1063)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 3204442300679999999996598
No 143
>KOG3303 consensus
Probab=20.70 E-value=52 Score=12.73 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=3.9
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999971
Q gi|254780455|r 60 LRTQLDHVRS 69 (418)
Q Consensus 60 L~~~i~~l~~ 69 (418)
++++++.+.+
T Consensus 30 ir~i~~E~~~ 39 (192)
T KOG3303 30 IRQILEEIDA 39 (192)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 144
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=20.09 E-value=53 Score=12.64 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=7.0
Q ss_pred HHHCCCCCEEEEECCCC
Q ss_conf 67426997599842443
Q gi|254780455|r 173 KLKNFSGLKIVDFGTRR 189 (418)
Q Consensus 173 ~~~~~~~~~l~eFG~RR 189 (418)
.+.++.+.++.=.|+--
T Consensus 118 ~V~~av~vPLIi~G~~n 134 (322)
T PRK04452 118 EVLQAVDVPLIIGGSGN 134 (322)
T ss_pred HHHHHCCCCEEEECCCC
T ss_conf 99975699989976788
Done!