Query         gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 418
No_of_seqs    127 out of 1031
Neff          6.7 
Searched_HMMs 39220
Date          Sun May 29 18:20:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780455.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK05321 nicotinate phosphorib 100.0       0       0  897.2  41.6  386    6-417     3-394 (400)
  2 cd01401 PncB_like Nicotinate p 100.0       0       0  847.8  39.3  372   13-400     1-377 (377)
  3 TIGR01514 NAPRTase nicotinate  100.0       0       0  841.4  34.8  396   11-415     1-429 (430)
  4 TIGR01513 NAPRTase_put putativ 100.0       0       0  795.5  32.8  353   16-411     2-421 (523)
  5 PRK09243 nicotinate phosphorib 100.0       0       0  715.2  33.5  342   10-409     6-368 (466)
  6 PRK12484 nicotinate phosphorib 100.0       0       0  713.6  33.8  334   14-407     5-353 (443)
  7 cd01570 NAPRTase_A Nicotinate  100.0       0       0  665.5  34.6  310   16-382     2-327 (327)
  8 COG1488 PncB Nicotinic acid ph 100.0       0       0  657.5  36.6  356    7-415     6-376 (405)
  9 cd01567 NAPRTase_PncB Nicotina 100.0       0       0  608.8  36.3  331   15-380     1-343 (343)
 10 KOG2511 consensus              100.0       0       0  575.0  16.2  374    9-417     3-401 (420)
 11 PRK08662 nicotinate phosphorib 100.0       0       0  454.7  34.5  322    1-409     1-332 (343)
 12 cd01571 NAPRTase_B Nicotinate  100.0       0       0  449.6  30.6  290   16-393     2-300 (302)
 13 PRK07188 nicotinate phosphorib 100.0       0       0  409.6  28.2  307   10-409    17-354 (355)
 14 pfam04095 NAPRTase Nicotinate  100.0       0       0  418.9  17.2  230  180-417     1-243 (243)
 15 PRK09198 putative nicotinate p 100.0 2.6E-40   7E-45  295.9  27.1  356   12-400     5-406 (462)
 16 cd01569 PBEF_like pre-B-cell c 100.0 1.8E-39 4.6E-44  290.1  24.0  344   15-391     1-394 (407)
 17 cd00516 PRTase_typeII Phosphor 100.0 1.2E-37   3E-42  277.7  23.1  275   19-380     1-281 (281)
 18 PRK08385 nicotinate-nucleotide  98.5 0.00011 2.9E-09   51.5  19.0  246   34-383    28-277 (279)
 19 PRK05848 nicotinate-nucleotide  98.3  0.0003 7.6E-09   48.6  18.4  267    9-381     4-271 (272)
 20 cd01568 QPRTase_NadC Quinolina  97.9   0.003 7.7E-08   41.8  16.2  248   10-355     2-256 (269)
 21 cd01573 modD_like ModD; Quinol  97.6  0.0081 2.1E-07   38.8  21.1  246   34-381    25-272 (272)
 22 pfam01729 QRPTase_C Quinolinat  95.3    0.26 6.6E-06   28.5  12.4  142  179-355    14-156 (169)
 23 cd01572 QPRTase Quinolinate ph  94.7    0.38 9.7E-06   27.4  14.2  246   10-354     2-254 (268)
 24 PRK06978 nicotinate-nucleotide  93.7    0.58 1.5E-05   26.1  15.1  258   11-383    22-288 (288)
 25 PRK07428 nicotinate-nucleotide  92.4     0.9 2.3E-05   24.8  17.6  204  108-382    77-284 (285)
 26 PRK05742 nicotinate-nucleotide  90.1     1.5 3.8E-05   23.3  17.8  262    9-381    10-276 (277)
 27 TIGR00078 nadC nicotinate-nucl  80.7     4.3 0.00011   20.2   6.2  232   35-381    26-276 (276)
 28 KOG0425 consensus               77.8     1.4 3.5E-05   23.6   1.8   54  103-156    72-142 (171)
 29 TIGR02402 trehalose_TreZ malto  77.6     4.4 0.00011   20.1   4.3   54  281-337   236-301 (564)
 30 pfam02749 QRPTase_N Quinolinat  76.8     4.4 0.00011   20.1   4.2   73   34-141    14-86  (88)
 31 PRK13344 spxA transcriptional   72.4     6.3 0.00016   19.0   4.1   41  305-346    12-52  (132)
 32 PRK03103 DNA polymerase IV; Re  72.2     7.1 0.00018   18.6   5.3   30   94-125    87-116 (410)
 33 TIGR01235 pyruv_carbox pyruvat  70.1     2.2 5.5E-05   22.2   1.3   32  328-363   732-765 (1169)
 34 PRK12559 transcriptional regul  69.4     5.2 0.00013   19.6   3.1   39  305-344    12-50  (131)
 35 PRK06106 nicotinate-nucleotide  67.6     8.9 0.00023   18.0  15.3  235   10-342    11-256 (281)
 36 PRK07896 nicotinate-nucleotide  67.4       9 0.00023   17.9  16.5  243    9-342    15-265 (288)
 37 PRK03609 umuC DNA polymerase V  66.8     9.2 0.00024   17.9   5.2   13  221-233   196-208 (422)
 38 TIGR01485 SPP_plant-cyano sucr  65.7     4.6 0.00012   20.0   2.2   37  294-333   126-162 (257)
 39 TIGR03156 GTP_HflX GTP-binding  62.1      11 0.00029   17.3   9.6   82  264-345   233-328 (351)
 40 COG0825 AccA Acetyl-CoA carbox  60.3     6.8 0.00017   18.8   2.3   61  209-278   102-162 (317)
 41 cd02933 OYE_like_FMN Old yello  58.9      13 0.00032   16.9   7.1   33  325-360   288-320 (338)
 42 PRK03352 DNA polymerase IV; Va  58.7      13 0.00033   16.9   8.6   32   93-124    89-120 (345)
 43 TIGR02109 PQQ_syn_pqqE coenzym  58.6     8.1 0.00021   18.2   2.4   31   91-121    37-68  (363)
 44 TIGR01735 FGAM_synt phosphorib  57.3      13 0.00033   16.9   3.2   57   24-83    148-207 (1401)
 45 KOG2550 consensus               54.9      15 0.00038   16.5   5.1   94  289-391   261-359 (503)
 46 PRK02240 GTP cyclohydrolase II  54.0      15 0.00039   16.4   3.9   32  324-355   188-221 (254)
 47 PRK07807 inositol-5-monophosph  53.8      13 0.00034   16.8   2.9   96    7-123    43-138 (479)
 48 cd03033 ArsC_15kD Arsenate Red  53.7      15 0.00039   16.3   4.8   37  305-342    12-48  (113)
 49 pfam05165 GGDN GGDN family. I   52.5      16 0.00041   16.2   3.8   32  324-355   181-214 (246)
 50 PRK11522 putrescine--2-oxoglut  51.7      16 0.00042   16.1   3.9   68   57-124    20-91  (468)
 51 COG1393 ArsC Arsenate reductas  50.9      17 0.00043   16.1   5.0   38  305-343    13-50  (117)
 52 COG2875 CobM Precorrin-4 methy  48.8      18 0.00046   15.8   7.6   32  300-336   205-236 (254)
 53 KOG3841 consensus               48.3      18 0.00047   15.8   2.9   33   88-126    75-111 (455)
 54 TIGR02442 Cob-chelat-sub cobal  47.8      19 0.00048   15.7   5.4   57  184-241   520-596 (688)
 55 PRK02406 DNA polymerase IV; Va  47.8      19 0.00048   15.7   6.6   28   95-124    89-116 (355)
 56 PRK09016 quinolinate phosphori  47.2      19 0.00049   15.7  15.4  232    9-342    24-272 (296)
 57 TIGR01617 arsC_related conserv  46.1      20 0.00051   15.6   3.7   47  304-357    10-56  (122)
 58 COG2144 Selenophosphate synthe  46.0      20 0.00051   15.6   3.5   83  173-274    86-171 (324)
 59 pfam03255 ACCA Acetyl co-enzym  45.4      20 0.00052   15.5   3.9   86  326-416    48-144 (145)
 60 TIGR01075 uvrD DNA helicase II  45.3      21 0.00052   15.5   6.4  118  211-332   222-360 (741)
 61 PRK05337 beta-hexosaminidase;   45.1      16  0.0004   16.3   2.1   36  296-336   219-256 (336)
 62 TIGR01252 acetolac_decarb alph  44.4      11 0.00029   17.2   1.3   23  207-233   153-175 (234)
 63 PRK03858 DNA polymerase IV; Va  44.0      21 0.00055   15.4   8.9   28   95-124    82-109 (398)
 64 PRK09853 putative selenate red  43.3      12  0.0003   17.2   1.2   14   60-73    163-176 (1032)
 65 TIGR01465 cobM_cbiF precorrin-  42.8      22 0.00057   15.2   7.6  111  272-387    49-198 (252)
 66 pfam08519 RFC1 Replication fac  42.1      23 0.00058   15.2   3.4   12  307-318   106-117 (155)
 67 COG4294 Uve UV damage repair e  42.0      23 0.00059   15.1   2.7   67  275-344   216-293 (347)
 68 TIGR02439 catechol_proteo cate  41.5      17 0.00043   16.0   1.8   41   60-100    33-79  (288)
 69 cd06815 PLPDE_III_AR_like_1 Ty  40.9      24 0.00061   15.0   3.3   19  370-388   237-255 (353)
 70 KOG1495 consensus               40.7      24 0.00061   15.0   4.7   14  211-224    71-84  (332)
 71 cd05292 LDH_2 A subgroup of L-  40.2      24 0.00062   15.0   5.1   17  294-310   198-214 (308)
 72 TIGR00513 accA acetyl-CoA carb  39.8      24 0.00062   15.0   2.4   30  247-279   143-172 (329)
 73 cd01466 vWA_C3HC4_type VWA C3H  39.6      25 0.00064   14.9   6.7   64  294-357    70-135 (155)
 74 pfam11557 DUF3233 Protein of u  38.6      18 0.00045   15.9   1.6   56  346-401   148-209 (327)
 75 cd05291 HicDH_like L-2-hydroxy  36.6      28 0.00071   14.6   4.7   10  218-227   153-162 (306)
 76 PRK04053 rps13p 30S ribosomal   36.2      28 0.00072   14.6   3.4   31  310-344    39-69  (149)
 77 cd02977 ArsC_family Arsenate R  36.0      28 0.00072   14.5   3.7   38  305-343    11-48  (105)
 78 PRK01655 spxA transcriptional   35.7      22 0.00055   15.3   1.6   38  305-343    12-49  (131)
 79 cd03034 ArsC_ArsC Arsenate Red  35.4      29 0.00074   14.5   4.8   38  305-343    11-48  (112)
 80 PRK10122 UTP--glucose-1-phosph  35.3      25 0.00064   14.9   1.9   56  254-311   219-275 (297)
 81 PRK05805 phosphate butyryltran  35.2      29 0.00074   14.4   5.1   34  206-239    94-130 (301)
 82 PRK06223 malate dehydrogenase;  35.0      29 0.00075   14.4   4.1   14  217-230   153-166 (312)
 83 PRK10853 hypothetical protein;  34.2      30 0.00077   14.3   4.5   37  305-342    12-48  (118)
 84 TIGR01302 IMP_dehydrog inosine  34.0      22 0.00057   15.3   1.5  102  290-400   250-361 (476)
 85 cd02072 Glm_B12_BD B12 binding  33.9      31 0.00078   14.3   6.3   75  278-357    39-119 (128)
 86 pfam03599 CdhD CO dehydrogenas  33.5      31 0.00079   14.3  10.2   17  325-341   234-250 (384)
 87 TIGR01907 cas_Cse3 CRISPR-asso  33.3      19 0.00048   15.7   1.0   27    9-37     14-41  (246)
 88 cd03035 ArsC_Yffb Arsenate Red  33.0      31  0.0008   14.2   5.0   37  305-342    11-47  (105)
 89 TIGR00575 dnlj DNA ligase, NAD  31.8      22 0.00056   15.3   1.2  144  185-345   497-666 (706)
 90 pfam08850 DUF1820 Domain of un  31.6      26 0.00067   14.8   1.5   27  372-398    64-90  (99)
 91 pfam03960 ArsC ArsC family. Th  31.6      33 0.00085   14.1   4.8   39  305-344     8-46  (111)
 92 PRK13389 UTP--glucose-1-phosph  30.6      34 0.00088   13.9   2.2   54  255-310   223-277 (302)
 93 cd03036 ArsC_like Arsenate Red  30.5      35 0.00088   13.9   4.6   38  305-343    11-48  (111)
 94 cd05293 LDH_1 A subgroup of L-  30.2      35 0.00089   13.9   4.9   12  218-229   156-167 (312)
 95 cd03586 Pol_IV_kappa Pol_IV_ka  30.2      35 0.00089   13.9   9.1   30   93-124    79-108 (337)
 96 PRK06543 nicotinate-nucleotide  30.2      35 0.00089   13.9  16.5  179  109-342    74-257 (281)
 97 PRK08591 acetyl-CoA carboxylas  29.8      12  0.0003   17.2  -0.5   55  293-357   362-417 (449)
 98 cd02071 MM_CoA_mut_B12_BD meth  29.7      36 0.00091   13.8   8.5   75  278-357    39-113 (122)
 99 pfam05985 EutC Ethanolamine am  29.7      36 0.00091   13.8   3.7   39  295-335    79-117 (237)
100 cd05294 LDH-like_MDH_nadp A la  29.5      36 0.00092   13.8   4.8   12  218-229   157-168 (309)
101 KOG3153 consensus               29.4      36 0.00092   13.8   5.1   10  351-360   180-189 (250)
102 TIGR02288 PaaN_2 phenylacetic   28.4      37 0.00095   13.7   5.0  110  225-341   133-279 (560)
103 PRK13945 formamidopyrimidine-D  28.3      38 0.00096   13.7   4.5  107  272-390   148-259 (283)
104 pfam02785 Biotin_carb_C Biotin  28.1     2.4 6.2E-05   21.9  -4.3   56  293-357    29-84  (107)
105 cd00300 LDH_like L-lactate deh  28.0      38 0.00097   13.7   4.8   12  218-229   151-162 (300)
106 TIGR01983 UbiG ubiquinone bios  27.1      36 0.00092   13.8   1.6   12  178-189    84-95  (275)
107 PTZ00134 40S ribosomal protein  27.0      39   0.001   13.5   3.6   26  254-279     8-39  (154)
108 cd05290 LDH_3 A subgroup of L-  26.8      40   0.001   13.5   5.1   10  218-227   155-164 (307)
109 PRK02261 methylaspartate mutas  26.7      40   0.001   13.5   7.6   75  278-357    43-123 (137)
110 PRK13370 mhpB 3-(2,3-dihydroxy  26.6      40   0.001   13.5   5.2   16   25-40     34-49  (313)
111 PRK06698 bifunctional 5'-methy  26.4      40   0.001   13.5   2.3   37  294-334   323-359 (459)
112 pfam09822 ABC_transp_aux ABC-t  26.3      41   0.001   13.5   2.4   48  250-300   206-262 (266)
113 PRK07765 para-aminobenzoate sy  26.3      41   0.001   13.5   7.4   13  224-236   121-135 (221)
114 PRK06136 uroporphyrin-III C-me  25.9      41  0.0011   13.4   1.9   14  214-227   118-131 (253)
115 pfam03445 DUF294 Putative nucl  25.7      42  0.0011   13.4   2.4   13  179-191    49-61  (168)
116 TIGR00655 PurU formyltetrahydr  25.3      25 0.00063   14.9   0.5   85  205-327   204-294 (294)
117 PRK05567 inositol-5'-monophosp  24.5      26 0.00067   14.8   0.5   94    5-118    38-131 (486)
118 PRK09762 galactosamine-6-phosp  24.4      44  0.0011   13.2   4.0   64  292-357    69-136 (236)
119 TIGR01267 Phe4hydrox_mono phen  24.1      44  0.0011   13.2   1.6   20   91-110    77-96  (251)
120 PTZ00314 inosine-5'-monophosph  23.9      35  0.0009   13.9   1.0   36    6-47     47-82  (499)
121 PRK00066 ldh L-lactate dehydro  23.7      45  0.0012   13.1   4.6   13  218-230   158-170 (315)
122 PRK08654 pyruvate carboxylase   23.6      20  0.0005   15.6  -0.3   56  293-357   363-418 (497)
123 PRK12655 fructose-6-phosphate   23.6      46  0.0012   13.1   3.7   71  267-341   103-178 (220)
124 KOG1710 consensus               23.3      46  0.0012   13.1   3.5   53   52-105   116-168 (396)
125 TIGR00875 talC transaldolase,   23.2      46  0.0012   13.1   1.9   42  295-339   134-177 (216)
126 COG2390 DeoR Transcriptional r  22.5      48  0.0012   13.0   6.3   75  325-411   224-299 (321)
127 PRK07649 para-aminobenzoate/an  22.4      48  0.0012   13.0   6.3   21   97-117    36-56  (195)
128 TIGR03372 putres_am_tran putre  22.1      40   0.001   13.5   1.0   46   60-105     7-52  (442)
129 PRK06552 keto-hydroxyglutarate  21.9      49  0.0012   12.9   5.9   31  323-357   156-186 (209)
130 PRK05586 biotin carboxylase; V  21.8      23 0.00058   15.2  -0.3   56  293-357   364-419 (447)
131 PRK05282 peptidase E; Validate  21.7      49  0.0013   12.9   6.0   18  358-378   133-150 (233)
132 cd00755 YgdL_like Family of ac  21.7      49  0.0013   12.9   5.2   30  299-331   154-183 (231)
133 COG0106 HisA Phosphoribosylfor  21.6      50  0.0013   12.9   7.2   48  212-278    84-134 (241)
134 PRK08463 acetyl-CoA carboxylas  21.5      23 0.00058   15.2  -0.3   55  293-357   364-419 (478)
135 pfam09024 consensus             21.2      40   0.001   13.5   0.9   76  327-411    30-107 (123)
136 PRK12833 acetyl-CoA carboxylas  21.2      24  0.0006   15.1  -0.3   56  293-357   367-422 (458)
137 PRK09140 2-dehydro-3-deoxy-6-p  21.1      51  0.0013   12.8   4.0   35  320-358   149-183 (206)
138 cd03032 ArsC_Spx Arsenate Redu  21.0      51  0.0013   12.8   5.2   38  305-343    12-49  (115)
139 COG0157 NadC Nicotinate-nucleo  20.9      51  0.0013   12.8  16.7  263   10-383     8-279 (280)
140 PRK06111 acetyl-CoA carboxylas  20.8      20 0.00051   15.6  -0.7   55  293-357   363-418 (449)
141 COG4943 Predicted signal trans  20.7      52  0.0013   12.7   2.9   31  292-322   355-387 (524)
142 PRK05294 carB carbamoyl phosph  20.7      52  0.0013   12.7   3.8   24  295-318   564-588 (1063)
143 KOG3303 consensus               20.7      52  0.0013   12.7   2.8   10   60-69     30-39  (192)
144 PRK04452 acetyl-CoA decarbonyl  20.1      53  0.0014   12.6   6.7   17  173-189   118-134 (322)

No 1  
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=897.19  Aligned_cols=386  Identities=42%  Similarity=0.714  Sum_probs=352.7

Q ss_pred             CCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf             65671001244011789999999998489965999999658875544000023699999999716999899999983777
Q gi|254780455|r    6 STSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF   85 (418)
Q Consensus         6 ~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~   85 (418)
                      ..++|||+||||||+|||||+|+||+++|+.+|+|+||+|+++++.+.+  ++||+++|++|++||||++||+||++.  
T Consensus         3 ~~~~~ii~SlLdTDlYklTM~qay~~~~~~~~a~f~f~~R~~~~~~~~~--~a~L~~~l~~l~~lrFt~eei~yL~~~--   78 (400)
T PRK05321          3 WFADPIIRSLLDTDLYKLTMMQAVLHHYPDAQVEYEFICRNDEVDLAEY--IDEIREQLDHLCTLRLTDDELDYLRGL--   78 (400)
T ss_pred             CCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHC--
T ss_conf             6566322035020779999999999858997699999955887405499--999999999998679999999999838--


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCCEEEE--CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             555557898899997508998416873--399269998548778677888999999888887753134866799999999
Q gi|254780455|r   86 YGKKQLFEPKFLSWLSDFQLPEYDLSH--KKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQA  163 (418)
Q Consensus        86 ~~~~~~~~~~fl~~L~~~~f~~~~~~~--~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~  163 (418)
                          ++|+|+|++||++|||++..+.+  ++|+++|+|+|||.+|||||||||+||||++++.+..       ....+.+
T Consensus        79 ----~~f~~~Fl~yL~~frf~~~~v~v~~~~~~l~i~V~Gpl~e~qL~Et~lL~iinel~~~~~~~-------~~~~~~~  147 (400)
T PRK05321         79 ----PFFKPDFLDWLRLFRLNPYYVTVRNDDGQLEIRIEGPWLHTILWEVPLLAIISELRFRYRSP-------GPFEAEA  147 (400)
T ss_pred             ----CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_conf             ----99998999999867998461789638982799999508999999999999998998865101-------5789999


Q ss_pred             HHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf             99999877767426--9975998424434797889999999984212120124788999972898767520489876400
Q gi|254780455|r  164 KKKLWSKIIKLKNF--SGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA  241 (418)
Q Consensus       164 ~~~~~~k~~~~~~~--~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~  241 (418)
                      ..++++|++++...  ++++++|||+|||||++||++++.+++++++++|+|||||+||++|||||+|||||||||+|++
T Consensus       148 ~~~la~K~~rl~~~a~~~~~~~EFGtRRr~s~~aq~~v~~a~~a~~~~~f~GTSNv~aa~~ygip~~GTmAHs~v~a~~a  227 (400)
T PRK05321        148 RARLWEKIERLKRRDLADFKIADFGTRRRFSFLWQEEVVEALKEGLGGQFVGTSNVHLAMKLGLTPIGTMAHEWFMAHQA  227 (400)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999998650158981543436556774047999999998715475556189999975999764458799999987


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             12203678654999999999963988659863468989999989-97310024341288887899999999999779881
Q gi|254780455|r  242 ITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNP  320 (418)
Q Consensus       242 ~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~-~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp  320 (418)
                      +..   +++++|+.||++|+++||++++|+|+||||+++|++++ ..+++.|.|||||||||++|++|+|+||+++|+||
T Consensus       228 l~~---~l~~se~~Af~~w~~~y~~~l~i~L~DTy~t~~fl~~~~~~~~~~~~GiR~DSGD~~~~~~k~~~~~~~~g~dp  304 (400)
T PRK05321        228 LGP---RLRDSQYAALEDWVREYRGDLGIALTDTIGMDAFLRDFDLYFAKLFDGLRHDSGDPFEWGEKAIAHYEKLGIDP  304 (400)
T ss_pred             HCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             431---04445999999999976987531134123088999975387786338334488787899999999999769996


Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
Q ss_conf             13089973898999999999972489737863346431465666666556777321689857576811167326887524
Q gi|254780455|r  321 QNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT  400 (418)
Q Consensus       321 ~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t  400 (418)
                      ++|+|||||||||++|.+|+++++++++++|||||+||||++        ++|||||||||||+||+||+||||||||+|
T Consensus       305 ~~k~iv~Sd~Lde~~i~~L~~~~~~~i~~sfGIGT~Lt~D~~--------~~~~L~~VyKLve~~G~P~~KlSd~~~K~t  376 (400)
T PRK05321        305 RTKTLVFSDGLDLDKALELYRHFRGRIRLSFGIGTNLTNDLP--------GVKPLNIVIKLVECNGQPVAKLSDSPGKTM  376 (400)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCC--------CCCCCCEEEEEEEECCEEEEEECCCCCCCC
T ss_conf             664799869999999999999862787645754755105899--------998665788877668842345048977656


Q ss_pred             CCHHHHHHHHH-HCCCCC
Q ss_conf             88899999999-809666
Q gi|254780455|r  401 GDISEIKRYLK-IFKIKK  417 (418)
Q Consensus       401 g~~~~~~~~~~-~~~~~~  417 (418)
                      |+++.|.+|+| +|++..
T Consensus       377 ~~~~~~~~~~~~~f~~~~  394 (400)
T PRK05321        377 CDDPEFLRYLRQVFGVPE  394 (400)
T ss_pred             CCCHHHHHHHHHHCCCCC
T ss_conf             997899999999809993


No 2  
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=100.00  E-value=0  Score=847.78  Aligned_cols=372  Identities=36%  Similarity=0.601  Sum_probs=337.5

Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             12440117899999999984899659999996588755440000236999999997169998999999837775555578
Q gi|254780455|r   13 SSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLF   92 (418)
Q Consensus        13 ~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~   92 (418)
                      +||||||+|||||+|+||+++|+.+|+|+||+|+++  .+++.+++||+++|++|++||||++||+||++.++     +|
T Consensus         1 ~SlL~TDlYklTM~~ay~~~~~~~~a~f~ff~R~p~--~~~~~~~~~L~~~i~~l~~~rfteeei~yL~~~~~-----~~   73 (377)
T cd01401           1 RSLLDTDLYKLTMQQAVLHHYPDVQVTYEFTNRSPE--DFLEEAAEALREQIDHLANLRFSEEELAYLRRSLP-----FL   73 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-----CC
T ss_conf             974465889999999999849997599999963898--75369999999999999858999999999984389-----99


Q ss_pred             CHHHHHHHHHCCCCCCEEE----ECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9889999750899841687----339926999854877867788899999988888775313486679999999999999
Q gi|254780455|r   93 EPKFLSWLSDFQLPEYDLS----HKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW  168 (418)
Q Consensus        93 ~~~fl~~L~~~~f~~~~~~----~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (418)
                      +|+|++||++|||+++.+.    +++|+|.|+|+|||.+|||||||||+||||+|++.+...++........+++..++.
T Consensus        74 ~~~fl~yL~~~rf~~~~v~~~~~~~~g~~~i~veGpl~e~~l~EtplL~iinel~~~~~~~~~~~~~~~~~~a~Ka~r~~  153 (377)
T cd01401          74 KPDYLDYLELFRLNPEEVVVRLDTGKGQLDIRISGPWKDTILYEVPLLAIVSEVYFRFRDADWDYEEQLEKLEEKLERLL  153 (377)
T ss_pred             CHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             98999999857998110478514678717999986310022688999999989998753033246889999999999999


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHH
Q ss_conf             87776742699759984244347978899999999842121201247889999728987675204898764001220367
Q gi|254780455|r  169 SKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIE  248 (418)
Q Consensus       169 ~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~  248 (418)
                      ..+ .....++++++|||+|||||+++|++++.++|+++++||+|||||+||++|||||+|||||||||+|+++.+   .
T Consensus       154 ~~a-~~~~~~~~~~~EFG~RR~~~~~~~d~~~~~~raa~~~gf~GTSNv~a~~~ygip~~GT~AHs~v~~~~~l~~---~  229 (377)
T cd01401         154 EEA-KRRDLNGFRFSDFGTRRRFSYEVQETVLKGLKQAAPGYLTGTSNVHFAMKYGLTPIGTVAHEWFMAHQALTG---D  229 (377)
T ss_pred             HHH-CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC---C
T ss_conf             984-345678986887028888764689999999998861737201078999875999764457699999987522---1


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             8654999999999963988659863468989999989973100-243412888878999999999997798811308997
Q gi|254780455|r  249 TQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQ-WKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVF  327 (418)
Q Consensus       249 ~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~-~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~  327 (418)
                      ++++|..||++|+++||++++|+|+||||+++|++++....++ +.|||||||||++|++++|++||++|+||.+|+|||
T Consensus       230 ~~~se~~Af~~~~~~y~~~~~i~LvDTy~~~~fl~~~~~~~~~~~~GVRlDSGDl~~~~~~~r~~~d~~G~~~~~k~iv~  309 (377)
T cd01401         230 LKDSQKAALERWVREYGGDLGIALTDTFGTDAFLRDFDLYFAKLFDGVRHDSGDPFEWGEKAIAHYEKLGIDPKTKTLVF  309 (377)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             00239999999999769974211131130899999877866652678853786789999999999997798957628999


Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
Q ss_conf             3898999999999972489737863346431465666666556777321689857576811167326887524
Q gi|254780455|r  328 SDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT  400 (418)
Q Consensus       328 Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t  400 (418)
                      ||||||++|++|+++++++++++|||||+||||+     ++++++|||||||||||+||+||||+||||||+|
T Consensus       310 S~~LDe~~i~~l~~~~~~~~~~~fGIGT~Lt~d~-----~~~~~~p~L~~VyKLve~~g~P~~KlSd~~~K~~  377 (377)
T cd01401         310 SDGLDVEKALELYEYFKGRIKVSFGIGTNLTNDF-----GNKEKSTPLNIVIKLVECNGRPVAKISDSPGKNM  377 (377)
T ss_pred             ECCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCC-----CCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCC
T ss_conf             1898999999999986489864898586762688-----7755688766689988678853447148986789


No 3  
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase; InterPro: IPR006406   This family represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primarily proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is IPR006405 from INTERPRO. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase. ; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0019357 nicotinate nucleotide biosynthetic process.
Probab=100.00  E-value=0  Score=841.44  Aligned_cols=396  Identities=35%  Similarity=0.564  Sum_probs=357.9

Q ss_pred             CCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf             001244011789999999998489965999999658875--544000023699999999716999899999983777555
Q gi|254780455|r   11 IISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQL--HLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK   88 (418)
Q Consensus        11 iI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~--~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~   88 (418)
                      ||+||||||+|||||+|||+|+||++.|.|+|.+|+...  ++.+++  ..|+++|++|++||||++|++||++.-    
T Consensus         1 iI~SLLDTD~YK~tm~~Av~~~fPdv~v~y~f~~R~~~~~y~~~~~~--~~~r~e~~al~~LRft~dE~~yL~~el----   74 (430)
T TIGR01514         1 IIRSLLDTDLYKITMLQAVFHLFPDVHVEYEFICRSEQLVYFLKELA--EALREEISALGALRFTDDEIEYLKQEL----   74 (430)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHC----
T ss_conf             91221344387887898787508852799999866711232389999--999999999841387677899998625----


Q ss_pred             CCCCCHHHHHHHH--HCCCCC-CEEEEC----CC-----CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             5578988999975--089984-168733----99-----26999854877867788899999988888775313486679
Q gi|254780455|r   89 KQLFEPKFLSWLS--DFQLPE-YDLSHK----KG-----QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSV  156 (418)
Q Consensus        89 ~~~~~~~fl~~L~--~~~f~~-~~~~~~----eg-----~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~  156 (418)
                       |+++++|++||+  .|||.| +.+.+.    +|     .+.|+|+|||.+++||||||||||||+|++..+++......
T Consensus        75 -P~lk~~y~~~L~ss~F~f~PeEqV~~~s~~~~~~~~~~kL~Ir~~G~w~~~iL~E~p~LA~iSE~y~R~~~~~~d~~~~  153 (430)
T TIGR01514        75 -PYLKSDYIDYLRSSEFRFDPEEQVEVSSIEIDKKPTKYKLDIRISGSWRDVILYEIPILAVISELYFRFREAEADVEQA  153 (430)
T ss_pred             -CCCCHHHHHHHHCCCCEECCEEEEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHH
T ss_conf             -7678678877640664316602688754760588851367788714167889999999999975653003899655468


Q ss_pred             HHHHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-------CEEHHHHHHHHHHCCCCCC
Q ss_conf             999999999999877767-42699759984244347978899999999842121-------2012478899997289876
Q gi|254780455|r  157 DLLYAQAKKKLWSKIIKL-KNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKD-------SFLGTSNALLAMNYKINAI  228 (418)
Q Consensus       157 ~~~~~~~~~~~~~k~~~~-~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~-------gf~GTSNv~aa~~~gi~~~  228 (418)
                      ...+.++..++.+.++.. ...+++.++|||||||+|.++|+.++..++.+..+       -+.|||||++|++||+.|+
T Consensus       154 l~~l~~Kl~~lka~~a~~~~~~~~~~~s~FGTRRRfSl~vq~~v~~~L~~~~~~~Pdrnks~~~GTSN~~lA~k~gl~Pi  233 (430)
T TIGR01514       154 LEVLESKLADLKALIAAETMSENRFRLSEFGTRRRFSLEVQDRVVKILKQAAPGSPDRNKSWLLGTSNVHLAKKLGLKPI  233 (430)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCCCCCC
T ss_conf             89999999999999963387889834741575201107899999999999618798645357860617899978188410


Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHH-CCCCEEECCCCCHHHHH
Q ss_conf             752048987640012203678654999999999963988-6598634689899999899731-00243412888878999
Q gi|254780455|r  229 GTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSFGTDFFLEHAPSWM-TQWKGFRHDSASPIEGG  306 (418)
Q Consensus       229 GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~~~~l~~~~~~~-~~~~GVR~DSGD~~~~~  306 (418)
                      |||||||+|+|+++.+  .+++++|+.||+.|+.+|++. +||+||||+|+|+||+++.... ..|+|||||||||..|.
T Consensus       234 GT~AHEW~q~hqai~~--~~~~~~q~~Ale~W~~~y~g~nLG~ALTDt~t~DaFLrdF~~~~A~~y~GlRHDSGDP~~wg  311 (430)
T TIGR01514       234 GTVAHEWFQAHQAISE--VDYKNAQKVALESWINEYDGDNLGIALTDTLTTDAFLRDFSKKFAKLYDGLRHDSGDPVEWG  311 (430)
T ss_pred             CCCCHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHH
T ss_conf             6776046655342023--45888989999988865389843030341000014631168546766177620478851687


Q ss_pred             HHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             999999997798811-308997389899999999997248-973786334643146566666655677732168985757
Q gi|254780455|r  307 EKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHFEN-RVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKA  384 (418)
Q Consensus       307 ~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~~~-~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~  384 (418)
                      +|+++||.++||||+ +|.||||||||.+++++|+++|++ ++..+|||||+||||++.+..-.+....|||||+||+||
T Consensus       312 ~K~~~HY~~L~iDP~f~K~~~FSD~Ld~~~A~el~~~f~~nR~k~sFGIGTnLTND~~~W~~~~gv~~~PLNIViKL~Ec  391 (430)
T TIGR01514       312 EKAIAHYEKLGIDPKFSKLLIFSDSLDVEKAIELSKYFKGNRVKASFGIGTNLTNDLAKWKSEVGVKVEPLNIVIKLVEC  391 (430)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHCCHHHHHHCCCCCCCCCCEEEEEEEE
T ss_conf             79998688716786047898972699888999999987348768740762011203145531258840233036674332


Q ss_pred             CCCC------EEEEECCCCCCCCCHHHHHHHHH-HCCC
Q ss_conf             6811------16732688752488899999999-8096
Q gi|254780455|r  385 NDKH------AVKLSDDPAKTTGDISEIKRYLK-IFKI  415 (418)
Q Consensus       385 ~g~P------~~KlSd~~~K~tg~~~~~~~~~~-~~~~  415 (418)
                      ||+|      |+||||+|||+||+++.+.++++ +|++
T Consensus       392 nG~~kddWhyv~KlSD~pGK~~~~~~~~l~~l~~~f~~  429 (430)
T TIGR01514       392 NGKPKDDWHYVAKLSDSPGKTMGEDETFLRALRKLFDV  429 (430)
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             68857672789997558888658858999999850789


No 4  
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase; InterPro: IPR006405   A deep split separates two related families of proteins, one of which includes experimentally characterised examples of nicotinate phosphoribosyltransferase, the first enzyme of NAD salvage biosynthesis. This entry represents the other family. Members have a different (longer) spacing of several key motifs and have an additional C-terminal domain of up to 100 residues. One argument suggesting that this family represents the same enzyme is that no species has a member of both families. Another is that the gene encoding this protein is located near other NAD salvage biosynthesis genes in Nostoc and in at least four different Gram-positive bacteria. NAD and NADP are ubiquitous in life. Most members of this family are from Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cut-offs. .
Probab=100.00  E-value=0  Score=795.50  Aligned_cols=353  Identities=24%  Similarity=0.291  Sum_probs=306.0

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCE-EEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             4011789999999998489965-999999658875544000023699999999716999899999983777555557898
Q gi|254780455|r   16 LDTDFYKILMLQLIWKFYPDIK-VTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP   94 (418)
Q Consensus        16 LdTD~YkltM~~a~~~~~~~~~-v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~   94 (418)
                      |.||||||||+|+||.++++.. ++||+|+|+.| +.++|+|+|||+.+|++|++|||+++||+||+++.+    +.|++
T Consensus         2 LlTDlYelTM~q~Yf~~g~~~~~A~Fe~FfRk~P-~~~~Y~v~AGL~~~l~~L~~frF~~~D~~YL~~llP----g~f~~   76 (523)
T TIGR01513         2 LLTDLYELTMAQGYFKEGIANKKAVFEVFFRKLP-FKRGYAVFAGLEDLLEFLENFRFDDEDIEYLASLLP----GIFDD   76 (523)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECC-CCCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHCC----CCCCH
T ss_conf             7540789999999986188888438888644368-999607863537899998512888899999998488----99867


Q ss_pred             HHHHHHHHCCCCCCEEEECCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8999975089984168733992------6999854877867788899999988888775313486679999999999999
Q gi|254780455|r   95 KFLSWLSDFQLPEYDLSHKKGQ------YVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW  168 (418)
Q Consensus        95 ~fl~~L~~~~f~~~~~~~~eg~------~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (418)
                      +||+||++|||++.+.+.+||+      |+|+|+||++||||+||+|||+||.               +.++|++..|+.
T Consensus        77 ~FL~~Lr~FrF~g~v~A~~EG~~~FP~eP~l~v~gpl~eaqLlET~vLn~~nf---------------qtLiAtKAAR~~  141 (523)
T TIGR01513        77 EFLDYLREFRFSGDVRALPEGSVVFPNEPLLQVEGPLIEAQLLETLVLNIINF---------------QTLIATKAARIV  141 (523)
T ss_pred             HHHHHHCCCCCEEEEEEECCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
T ss_conf             89998507521068988416635408888899841156788887999988878---------------899999999999


Q ss_pred             HHHHHHHCCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHC-CCCC
Q ss_conf             8777674269975--998424434797889999999984212120124788999972898767520489876400-1220
Q gi|254780455|r  169 SKIIKLKNFSGLK--IVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA-ITRT  245 (418)
Q Consensus       169 ~k~~~~~~~~~~~--l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~-~~~~  245 (418)
                      .      ++.+.+  |+|||+||+|+.   |++++|+||||+|||+|||||+|||+||||+.|||||||||+|++ ..+.
T Consensus       142 ~------aa~~~~G~l~EfG~RRAqG~---daAl~AaRAAyigGa~gTSN~~AGr~ygIPv~GTmAHa~V~~F~~~~~P~  212 (523)
T TIGR01513       142 L------AAGGKPGRLLEFGLRRAQGM---DAALKAARAAYIGGADGTSNVLAGRLYGIPVSGTMAHAFVQSFDQSEGPT  212 (523)
T ss_pred             H------HHCCCCCEEEEECCCCCCCH---HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHEEECCCCCCC
T ss_conf             9------86489962874056400031---37899988888861104378888877388974043312331106887788


Q ss_pred             H---------------HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHH----HHHHHHCCC---CEEECCCCCH
Q ss_conf             3---------------6786549999999999639886598634689899-999----899731002---4341288887
Q gi|254780455|r  246 D---------------IETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDF-FLE----HAPSWMTQW---KGFRHDSASP  302 (418)
Q Consensus       246 ~---------------~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~-~l~----~~~~~~~~~---~GVR~DSGD~  302 (418)
                      +               -+.+-.|.+||++|++.||.+. ++|+|||||.. +++    .+.++..+.   .||||||||+
T Consensus       213 ~~mWleqvCahlGlGvqePhP~E~~AFrAYA~~YP~~~-~lL~DTYDtL~SG~~nai~va~eLg~~~~~~~gVRiDSGDL  291 (523)
T TIGR01513       213 ELMWLEQVCAHLGLGVQEPHPSELEAFRAYAKLYPKNT-VLLVDTYDTLRSGLPNAIAVAKELGEQGKEVVGVRIDSGDL  291 (523)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHH
T ss_conf             51479889987357656889667899999999758971-67511166776789999999999752055058899611779


Q ss_pred             HHHHHHHHHHHHHCC-------CCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC--
Q ss_conf             899999999999779-------88113089973898999999999972489737863346431465666666556777--
Q gi|254780455|r  303 IEGGEKIIAWWKKMN-------CNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTE--  373 (418)
Q Consensus       303 ~~~~~k~~~~l~~~G-------idp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~--  373 (418)
                      .++|+++|+.||++|       +  ...+||.||+|||..|..|..  .++.||+|||||+|         +|+.++|  
T Consensus       292 ~~LSk~~R~~LD~AGaqfqvPWL--~~vkI~VSn~LDE~~I~~L~~--~gapID~~GVGT~L---------vTa~~~PGG  358 (523)
T TIGR01513       292 AYLSKKVRKELDEAGAQFQVPWL--EEVKIVVSNDLDENSIAALKA--EGAPIDVYGVGTSL---------VTASDAPGG  358 (523)
T ss_pred             HHHHHHHHHHHHHHCHHCCCCCH--HCCEEEEECCCCHHHHHHHHH--CCCCEEEEEECCEE---------EECCCCCCC
T ss_conf             99999999999861111158600--375489967404789999996--58945388846788---------984788885


Q ss_pred             CCCEEEEEEEECC-----------------------CCEEEEECCCCCCC--CCHHHHHHHHH
Q ss_conf             3216898575768-----------------------11167326887524--88899999999
Q gi|254780455|r  374 KLQIVCKVTKAND-----------------------KHAVKLSDDPAKTT--GDISEIKRYLK  411 (418)
Q Consensus       374 ~l~~VyKlve~~g-----------------------~P~~KlSd~~~K~t--g~~~~~~~~~~  411 (418)
                      +++||||||+++|                       +|+||+|||++|.|  |.|+.+|.|.|
T Consensus       359 ~l~~VYKlva~~gtqPahtqhGhaaqrlPhW~~G~~~P~~K~S~n~~K~t~Pg~K~v~R~~~~  421 (523)
T TIGR01513       359 ALSGVYKLVAYEGTQPAHTQHGHAAQRLPHWEDGKIRPKMKLSENPEKSTLPGKKQVFRLYDK  421 (523)
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCEEECEEEEECCCCCCCCCCHHHHHEHHHH
T ss_conf             002137888863787641124403333883115746210442068766788851432110130


No 5  
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=100.00  E-value=0  Score=715.25  Aligned_cols=342  Identities=23%  Similarity=0.276  Sum_probs=299.2

Q ss_pred             CCCHHHHCCHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf             100124401178999999999848-9965999999658875544000023699999999716999899999983777555
Q gi|254780455|r   10 PIISSLLDTDFYKILMLQLIWKFY-PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK   88 (418)
Q Consensus        10 piI~SlLdTD~YkltM~~a~~~~~-~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~   88 (418)
                      +--.+|| ||+|||||+|+||+++ ++++++|++|+|++| +.++|+|++||+++|+++++|||+++||+||++..    
T Consensus         6 ~~~~aLl-TDlYqlTM~~~y~~~g~~~~~avFelFfRk~P-~~~gy~V~AGLe~~l~~l~~~rF~~~di~yL~~~~----   79 (466)
T PRK09243          6 DDSLALL-TDLYELTMAQAYFKDGIHNRRAVFEVFFRKLP-FGRGYAVFAGLERLLEYLENLRFTEEDIEYLRSLG----   79 (466)
T ss_pred             CCCHHHH-HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC-CCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHCC----
T ss_conf             6644888-88899999999997699888279999874699-99945999769999999997799989999999759----


Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEECCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             5578988999975089984168733992------6999854877867788899999988888775313486679999999
Q gi|254780455|r   89 KQLFEPKFLSWLSDFQLPEYDLSHKKGQ------YVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQ  162 (418)
Q Consensus        89 ~~~~~~~fl~~L~~~~f~~~~~~~~eg~------~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~  162 (418)
                        .|+++|++||++|+|++.+++++||+      |+++|+||+.+|||+||+||++||..+.++|               
T Consensus        80 --~f~~~Fl~yL~~~~Fsg~v~A~~EG~~~Fp~ePll~v~gp~~~~qllET~lL~~ln~~sliAT---------------  142 (466)
T PRK09243         80 --GFSEDFLDYLRNFRFTGDIRAMPEGELVFPNEPLLRVEAPLAEAQLLETLLLNIINFQTLIAT---------------  142 (466)
T ss_pred             --CCCHHHHHHHHHCCCCEEEEEECCCCEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf             --989899999974885248998358666618997799996688999999999999888889999---------------


Q ss_pred             HHHHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf             9999998777674-269975998424434797889999999984212120124788999972898767520489876400
Q gi|254780455|r  163 AKKKLWSKIIKLK-NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA  241 (418)
Q Consensus       163 ~~~~~~~k~~~~~-~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~  241 (418)
                             |++|++ ++.+++++|||+||+|+.   ++++.++||+|+|||+|||||+||++||||+.|||||||||+|+ 
T Consensus       143 -------kAaR~~~aA~~~~v~efG~RRa~g~---~a~~~aaRaayigG~~~TSnv~A~~~~gip~~GTmaHs~v~~~~-  211 (466)
T PRK09243        143 -------KAARIVSAAGGRPLLEFGSRRAQGP---DAAVWAARAAYIGGFDATSNVLAGKRYGIPVSGTMAHSFVQAFD-  211 (466)
T ss_pred             -------HHHHHHHHHCCCEEEECCCCCCCCC---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHEECC-
T ss_conf             -------9999999848984684057666860---58999999999807555568899997599974334636440067-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH-----HHHHHHHHHHHC--CCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf             1220367865499999999996398865986346898-----999998997310--024341288887899999999999
Q gi|254780455|r  242 ITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT-----DFFLEHAPSWMT--QWKGFRHDSASPIEGGEKIIAWWK  314 (418)
Q Consensus       242 ~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~-----~~~l~~~~~~~~--~~~GVR~DSGD~~~~~~k~~~~l~  314 (418)
                                +|.+||++|+++||++. ++|+||||+     +++++.+.++..  +..||||||||++++++++|++||
T Consensus       212 ----------~E~~AF~a~a~~~p~~~-~lLvDTYdtl~sGv~~ai~va~el~~g~~l~gVRlDSGDLa~Ls~~vR~~LD  280 (466)
T PRK09243        212 ----------DEYEAFRAYAEAYPKNC-VLLVDTYDTLKSGVPNAIKVAKELGDGIELGGVRIDSGDLAYLSKKVRKMLD  280 (466)
T ss_pred             ----------CHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf             ----------69999999999779872-7999754226665899999999864267541057055239999999999997


Q ss_pred             HCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC----CEE
Q ss_conf             7798811308997389899999999997248973786334643146566666655677732168985757681----116
Q gi|254780455|r  315 KMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDK----HAV  390 (418)
Q Consensus       315 ~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~----P~~  390 (418)
                      ++|+.  ..+|++||||||+.|.+|.++  ++.+|+|||||+|         +||.++|+||+||||||++|+    |+|
T Consensus       281 ~aG~~--~~kI~aSndLDE~~I~~L~~~--ga~ID~fGVGT~L---------vT~~~~Palg~VYKLv~~~~~g~~~p~i  347 (466)
T PRK09243        281 EAGFT--DTKIVASNDLDEYTIASLKAQ--GAPIDGFGVGTKL---------VTASDAPALGGVYKLVAIEGEGGWIPKI  347 (466)
T ss_pred             HCCCC--CCEEEEECCCCHHHHHHHHHC--CCCCCEEECCCEE---------EECCCCCCCCEEEEEEEECCCCCCCCCE
T ss_conf             67888--848999489899999999976--9972232045436---------7558988776168899986888766513


Q ss_pred             EEECCCCCCC--CCHHHHHHH
Q ss_conf             7326887524--888999999
Q gi|254780455|r  391 KLSDDPAKTT--GDISEIKRY  409 (418)
Q Consensus       391 KlSd~~~K~t--g~~~~~~~~  409 (418)
                      |+|++++|.|  |.|+.||.|
T Consensus       348 K~S~~~~K~t~PG~Kqv~R~~  368 (466)
T PRK09243        348 KISKNSEKVTTPGRKQVYRIY  368 (466)
T ss_pred             ECCCCCCCCCCCCCCEEEEEE
T ss_conf             403777763788661589999


No 6  
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=713.63  Aligned_cols=334  Identities=25%  Similarity=0.280  Sum_probs=295.6

Q ss_pred             HHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             24401178999999999848996599999965887554400002369999999971699989999998377755555789
Q gi|254780455|r   14 SLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFE   93 (418)
Q Consensus        14 SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~   93 (418)
                      +|| ||+|||||+|+||+++++.+++|++|+|++| +.++|+|++||+++|+++++|||+++||+||++..      .|+
T Consensus         5 aLl-TDlYqlTM~~~y~~~g~~~~avFelF~Rk~P-~~~~y~v~AGle~~l~~l~~~~F~~~di~yL~~~~------~f~   76 (443)
T PRK12484          5 ALL-TDLYELTMANSYLAERMSGPATFSLFYRKLP-DGRGFLVAAGLADVVEFLEAFRFDEQDLRYLRGLN------QFS   76 (443)
T ss_pred             HHH-HHHHHHHHHHHHHHCCCCCCEEEEEEEECCC-CCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHCC------CCC
T ss_conf             587-8889999999999729998189999985699-99822799258999999987799999999998569------998


Q ss_pred             HHHHHHHHHCCCCCCEEEECCC------CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             8899997508998416873399------2699985487786778889999998888877531348667999999999999
Q gi|254780455|r   94 PKFLSWLSDFQLPEYDLSHKKG------QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKL  167 (418)
Q Consensus        94 ~~fl~~L~~~~f~~~~~~~~eg------~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (418)
                      ++|++||++|||++++++++||      +|+|+|+|||.+|||+||+||++||+.+..+|                    
T Consensus        77 ~~Fl~~L~~~~f~g~v~A~~EG~v~fp~ePll~V~gP~~~~qllET~lL~~ln~~sliAT--------------------  136 (443)
T PRK12484         77 EEFLAWLAGFRFTGDVWAVPEGTVVFPNEPLLEVTAPLIEAQLVETFLLNQINHQSLIAS--------------------  136 (443)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_conf             799999985847742888317864279983799997589999999999999999989999--------------------


Q ss_pred             HHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCH
Q ss_conf             98777674-26997599842443479788999999998421212012478899997289876752048987640012203
Q gi|254780455|r  168 WSKIIKLK-NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTD  246 (418)
Q Consensus       168 ~~k~~~~~-~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~  246 (418)
                        |++|++ ++++++++|||+||+|++   ++++.++|++++|||+|||||+||++|||||+|||||||||+|++     
T Consensus       137 --kAaR~~~aA~~~~vleFG~RRa~g~---da~~~~aRaayigG~~gTSNvlag~~~gip~~GTmaHs~v~af~~-----  206 (443)
T PRK12484        137 --KAARVVLAARGRPVVDFGARRAHGT---DAACYVARASYIAGAAGTSNVLAARQYGIPTSGTMAHSYVEAFPD-----  206 (443)
T ss_pred             --HHHHHHHHHCCCCEEECCCCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHEEECCCC-----
T ss_conf             --9999998608990563355355761---578999999986375430787889866999654430030011798-----


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH----HHHHHHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             678654999999999963988659863468989----999989973100--24341288887899999999999779881
Q gi|254780455|r  247 IETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTD----FFLEHAPSWMTQ--WKGFRHDSASPIEGGEKIIAWWKKMNCNP  320 (418)
Q Consensus       247 ~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~----~~l~~~~~~~~~--~~GVR~DSGD~~~~~~k~~~~l~~~Gidp  320 (418)
                            |..||++|+++||++ +|+|+||||+.    ++++.+.++...  ..||||||||++++++++|++||++|++ 
T Consensus       207 ------E~~Af~a~a~~~p~~-~i~LvDTYdtl~Gv~~ai~va~~l~~~~~~~GVRlDSGDl~~Ls~~~R~~LD~~G~~-  278 (443)
T PRK12484        207 ------EVAAFRAFARLYPDA-TMLLVDTYDTLRGVRNAIEVAKELGNRGDVRGVRLDSGDLAELSKATRAILDTAGLE-  278 (443)
T ss_pred             ------HHHHHHHHHHHCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC-
T ss_conf             ------999999999977998-179997474377799999999984212577868868853999999999999867998-


Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
Q ss_conf             13089973898999999999972489737863346431465666666556777321689857576811167326887524
Q gi|254780455|r  321 QNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT  400 (418)
Q Consensus       321 ~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t  400 (418)
                      . .+|++||||||++|.+|.++  ++++|+|||||+|         +|+.++|+||+||||||++|+|++|+|  ++|.|
T Consensus       279 ~-~kI~~S~~LdE~~I~~L~~~--ga~iD~fGVGT~L---------vT~~~~P~lg~VYKLV~~~~~p~~K~S--~~K~t  344 (443)
T PRK12484        279 Q-VKIVASGGLDENRIAALLAA--GAPIDGFGVGTRL---------GVSADAPVLDSAYKLVAYDGRGVTKLS--SGKVT  344 (443)
T ss_pred             C-CEEEEECCCCHHHHHHHHHC--CCCEEEECCCCCE---------ECCCCCCCCCEEEEEEEECCCCEEECC--CCCCC
T ss_conf             8-67999699999999999987--9963587167634---------038999867648999998687537627--87625


Q ss_pred             --CCHHHHH
Q ss_conf             --8889999
Q gi|254780455|r  401 --GDISEIK  407 (418)
Q Consensus       401 --g~~~~~~  407 (418)
                        |.|+.||
T Consensus       345 ~PG~K~vyR  353 (443)
T PRK12484        345 YPGRKQVFR  353 (443)
T ss_pred             CCCCEEEEE
T ss_conf             787648999


No 7  
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=100.00  E-value=0  Score=665.49  Aligned_cols=310  Identities=24%  Similarity=0.281  Sum_probs=273.2

Q ss_pred             HCCHHHHHHHHHHHHHH-CCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             40117899999999984-89965999999658875544000023699999999716999899999983777555557898
Q gi|254780455|r   16 LDTDFYKILMLQLIWKF-YPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP   94 (418)
Q Consensus        16 LdTD~YkltM~~a~~~~-~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~   94 (418)
                      |.||+|||||+|+|||+ +|+++|+||+|+|++| ..++|.+++||+++|++|+++|||++|++||++.++      |++
T Consensus         2 l~TD~YkltM~qa~~~~~~~~~~~~~e~f~R~~p-~~~~~~v~~gl~~~i~~l~~lrft~eEl~yL~~~~~------~~~   74 (327)
T cd01570           2 LLTDLYQLTMAQAYWKEGKHNKPAVFELFFRKLP-FGGGYAVFAGLEELLEYLENFRFTEEDIDYLRSLGI------FDE   74 (327)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC-CCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC------CCH
T ss_conf             5335779999999997089997299999975798-777312356199999999867999999999986599------998


Q ss_pred             HHHHHHHHCCCCCCEEEECCCCE------EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             89999750899841687339926------999854877867788899999988888775313486679999999999999
Q gi|254780455|r   95 KFLSWLSDFQLPEYDLSHKKGQY------VLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW  168 (418)
Q Consensus        95 ~fl~~L~~~~f~~~~~~~~eg~~------~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (418)
                      +|++||+.|||++.+.+++||++      +|+|+|||.++++||||||+|||+.+..++               +     
T Consensus        75 ~fl~~L~~~rf~~~v~a~~eG~~~~~~ep~l~I~Gp~~~~~l~Et~lL~iis~~~~iat---------------k-----  134 (327)
T cd01570          75 EFLDYLRGFRFTGTIYAIPEGEVVFPNEPLLTVEGPLIEAQLLETLLLNLINFQTLIAT---------------K-----  134 (327)
T ss_pred             HHHHHHHHCCCCCEEEECCCCEEEECCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH---------------H-----
T ss_conf             99999982899971895578418558915899997189999999999988538999998---------------9-----


Q ss_pred             HHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH
Q ss_conf             877767-4269975998424434797889999999984212120124788999972898767520489876400122036
Q gi|254780455|r  169 SKIIKL-KNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDI  247 (418)
Q Consensus       169 ~k~~~~-~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~  247 (418)
                        +.++ .++++++++|||+|||||++   +++.+.|+++++||+|||||++|++||+||+|||||||||+|++      
T Consensus       135 --a~r~~~aa~~~~~~eFGtRR~~~~~---~~~~~~ra~~~ggf~GTSNv~~a~~~gl~p~GT~aHe~i~~~~~------  203 (327)
T cd01570         135 --AARVRLAAGGRPLLEFGLRRAQGPD---AALSAARAAYIGGFDGTSNVLAGKLYGIPVSGTMAHSFVQAFDD------  203 (327)
T ss_pred             --HHHHHHHCCCCCEEECCCCCCCCHH---HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHEEECCC------
T ss_conf             --9999986399946722787764268---99999998532786232789999982998334444210245255------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCH-----HHHHHHHHHHHC---CCCEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             7865499999999996398865986346898-----999998997310---02434128888789999999999977988
Q gi|254780455|r  248 ETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT-----DFFLEHAPSWMT---QWKGFRHDSASPIEGGEKIIAWWKKMNCN  319 (418)
Q Consensus       248 ~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~-----~~~l~~~~~~~~---~~~GVR~DSGD~~~~~~k~~~~l~~~Gid  319 (418)
                           |..||++|+++||+++ |+|+|||++     ++|++++....+   ++.|||+|||||.+|++++|++||++|++
T Consensus       204 -----e~~A~~~~~~~~~~~~-iaL~DTydt~~~g~~~fl~~~~~~~~~~~~~~GVR~DSGD~~~~~~~~r~~ld~~G~~  277 (327)
T cd01570         204 -----ELAAFRAFAEAYPDNF-TLLVDTYDTLRSGLPNAIAVAKELGALGYRLVGVRIDSGDLAYLSKEARKMLDEAGLT  277 (327)
T ss_pred             -----HHHHHHHHHHHCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf             -----9999999999779984-8998457751553999999999878517888679847988799999999999877999


Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             113089973898999999999972489737863346431465666666556777321689857
Q gi|254780455|r  320 PQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVT  382 (418)
Q Consensus       320 p~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlv  382 (418)
                      +.  +||+||||||++|.++.+  .++.+++|||||+|         +||.++||||||||||
T Consensus       278 ~~--kIv~SdgLd~~~i~~l~~--~g~~id~FGIGT~L---------~t~~~~p~l~iV~KLV  327 (327)
T cd01570         278 KV--KIVASNDLDEYTIAALNA--QGAPIDAFGVGTRL---------VTSQSQPALGGVYKLV  327 (327)
T ss_pred             CC--EEEEECCCCHHHHHHHHH--CCCCCEEEECCCCC---------CCCCCCCCCCEEEECC
T ss_conf             97--899979999999999997--79973499678761---------2399998077889539


No 8  
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=100.00  E-value=0  Score=657.47  Aligned_cols=356  Identities=33%  Similarity=0.463  Sum_probs=309.3

Q ss_pred             CCCCCCHHHHCCHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf             56710012440117899999999984899-65999999658875544000023699999999716999899999983777
Q gi|254780455|r    7 TSDPIISSLLDTDFYKILMLQLIWKFYPD-IKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF   85 (418)
Q Consensus         7 ~~~piI~SlLdTD~YkltM~~a~~~~~~~-~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~   85 (418)
                      ..+|+|+|+||||+||+||+|+||+++|+ ..|+|++++|+.| ++++|++++|++++|++|++|||+++|+.||++.  
T Consensus         6 ~~~~~i~~~L~TD~Ykltm~q~~~~~~~~~~~v~~e~~~R~~p-~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~~--   82 (405)
T COG1488           6 KSEPDIKSLLDTDLYKLTMLQAYLHDGPNNVTVVFEFFFRKLP-FLGGYAVFAGLEEVLELLENLRFSEEEIAYLRSL--   82 (405)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC--
T ss_conf             0067776437768999999999885489871799999852786-5306899988999999975157888999987506--


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCCEEEECCC------CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             555557898899997508998416873399------26999854877867788899999988888775313486679999
Q gi|254780455|r   86 YGKKQLFEPKFLSWLSDFQLPEYDLSHKKG------QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLL  159 (418)
Q Consensus        86 ~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg------~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~  159 (418)
                          ++++++|++||+  +|+..+.+++||      +|+|+|+|||.+++|||||+|+|||+...               
T Consensus        83 ----~~~~~~fl~~L~--~f~~~i~a~~eg~~~~~~ep~l~i~G~~~e~~l~Et~lL~ii~~~~~---------------  141 (405)
T COG1488          83 ----PFFKPDFLNYLR--RFPLDIYAVPEGTVVFPNEPVLRIEGPYLETILLETPLLGIINEASL---------------  141 (405)
T ss_pred             ----CCCCHHHHHHHH--HCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf             ----655268999985--18786278742512048982599985588999999999999999999---------------


Q ss_pred             HHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             999999999877767426--997599842443479788999999998421212012478899997289876752048987
Q gi|254780455|r  160 YAQAKKKLWSKIIKLKNF--SGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPM  237 (418)
Q Consensus       160 ~~~~~~~~~~k~~~~~~~--~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~  237 (418)
                             +++|++++..+  .+++++|||+|||||+++|   ..+.++++++||.|||||++|++||++|+|||||||+|
T Consensus       142 -------iatka~r~~~~a~~~~~v~dFGtRr~~~~~~~---~~~~raa~igg~~GtSnv~~a~~~g~~~~GTmaHa~i~  211 (405)
T COG1488         142 -------IATKAARVKDAAGKGFPVLDFGTRRRHSADAQ---PWIGRAAYIGGFDGTSNVLAAKKYGIKPIGTMAHALIQ  211 (405)
T ss_pred             -------HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             -------99999999975358984885467656640567---99999998734646106999997299976864539999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHH----CCCCEEECCCCCHHHHHHHHHHH
Q ss_conf             640012203678654999999999963988-6598634689899999899731----00243412888878999999999
Q gi|254780455|r  238 VAAAITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSFGTDFFLEHAPSWM----TQWKGFRHDSASPIEGGEKIIAW  312 (418)
Q Consensus       238 a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~~~~l~~~~~~~----~~~~GVR~DSGD~~~~~~k~~~~  312 (418)
                      +|+++.+       +|..||++|+++||++ ++|+|+|||+.+++++.+....    ..+.|||+|||||.++++++|++
T Consensus       212 ~~~~~~~-------~e~~A~~~~~e~~~~~~~~i~ltD~~~~~~~~~~~~~~~~~~~~~~~GVR~DSGd~~~~~~kvr~~  284 (405)
T COG1488         212 AFGQLFG-------DEVAAFRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRLDSGDPRELSEKVRAH  284 (405)
T ss_pred             HHHCCCC-------HHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             8620233-------099999999997689972899985065277887678888614466338977999979999999999


Q ss_pred             HHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEE
Q ss_conf             99779881130899738989999999999724897378633464314656666665567773216898575768111673
Q gi|254780455|r  313 WKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKL  392 (418)
Q Consensus       313 l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~Kl  392 (418)
                      ||+.|++|  |+||+|||++.|+++.+++.+..+ +++|||||+|||+.         +.||+++|||||||+|+|++|+
T Consensus       285 ld~~G~~~--~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~---------~~~~~~~v~Klvev~g~p~~Ki  352 (405)
T COG1488         285 LDKLGYDP--VKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAK---------PRPPLDIVYKLVEVNGKPVAKI  352 (405)
T ss_pred             HHHCCCCC--EEEEEECCCCHHHHHHHHHHHCCC-CCEECCCHHHCCCC---------CCCCCEEEEEEEEECCCCCEEE
T ss_conf             99759985--089983785358999999981787-20765655431489---------9886306999999868011352


Q ss_pred             ECCCCCCCCCHHH-HHHHHHHCCC
Q ss_conf             2688752488899-9999998096
Q gi|254780455|r  393 SDDPAKTTGDISE-IKRYLKIFKI  415 (418)
Q Consensus       393 Sd~~~K~tg~~~~-~~~~~~~~~~  415 (418)
                      |++|+|.+|.... .++..++++.
T Consensus       353 s~~Pgkk~~~r~~~~~~~~~~~~~  376 (405)
T COG1488         353 SKNPGKKQVYRSAFVRELLVVFGD  376 (405)
T ss_pred             CCCCCCCEEECCHHHHHHHEECCC
T ss_conf             578764403440344544210254


No 9  
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=100.00  E-value=0  Score=608.83  Aligned_cols=331  Identities=30%  Similarity=0.366  Sum_probs=289.2

Q ss_pred             HHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             44011789999999998489965999999658875544000023699999999716999899999983777555557898
Q gi|254780455|r   15 LLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP   94 (418)
Q Consensus        15 lLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~   94 (418)
                      +||||+|||||+|+||+++|+++|+|+|++|+++ ..+++.+++||+++|++|++++|+++|++||++.+      .+.+
T Consensus         1 lL~TD~Ykltm~~~~~~~~~~~~v~f~~~~R~~~-~~~~~~v~~gl~~~l~~l~~l~~~~~e~~~l~~~~------~~~~   73 (343)
T cd01567           1 LLDTDLYKLTMMQAYLYPYPNTRVVFEFTFRSNP-FGGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLL------IFGE   73 (343)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC------CCCH
T ss_conf             9623589999999998559991699999977899-87505699999999999863899999999998459------9986


Q ss_pred             HHHHHHHHCCCCCCEEEECCC------CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             899997508998416873399------26999854877867788899999988888775313486679999999999999
Q gi|254780455|r   95 KFLSWLSDFQLPEYDLSHKKG------QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW  168 (418)
Q Consensus        95 ~fl~~L~~~~f~~~~~~~~eg------~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (418)
                      .|+++++.++++.++.+++||      +|+|+|+|||.++++||||||+|+|+.++.++.+.+....       +.....
T Consensus        74 ~~~~~~~~~~~~~~i~a~~eG~~~~~~~p~i~i~g~~~~~~l~Et~lL~ii~~~t~~at~~~~~~~~-------a~~~~~  146 (343)
T cd01567          74 FFLYLLFLGKLPLEIYALPEGTVVFPKEPLLTIEGPWPEAGLLETPLLAIWNEATSIATKAARKKLA-------AGGLLE  146 (343)
T ss_pred             HHHHHHHCCCCCCEEEEECCCCEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_conf             8999885099872598715864315793799999468998899999999999999999889999999-------999875


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHH
Q ss_conf             87776742699759984244347978899999999842121201247889999728987675204898764001220367
Q gi|254780455|r  169 SKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIE  248 (418)
Q Consensus       169 ~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~  248 (418)
                      ++  ......+++++|||+|||||++   .++.++++++++||.||||+++|++||++|+|||||||||+|+++      
T Consensus       147 ~~--~~~~~~~~~~~dFG~Rr~~s~~---~~~~~~~a~~~~~~~gtSn~~~a~~~~l~~iGT~aHs~i~~~~~~------  215 (343)
T cd01567         147 TK--DNLEELGFKLHDFGTRRRHSPE---AALSGGRAALIGGFGGTSNVAAAKKLGIPPIGTMAHSWIQAFGAL------  215 (343)
T ss_pred             HH--CCCCCCCCEEEEECCCCCCCHH---HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCC------
T ss_conf             10--1013589768860798888778---999999997559975605999986518975353403899975763------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH-HHHH---HHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             8654999999999963988659863468989999-9899---731--002434128888789999999999977988113
Q gi|254780455|r  249 TQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFL-EHAP---SWM--TQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQN  322 (418)
Q Consensus       249 ~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l-~~~~---~~~--~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~  322 (418)
                       ++++..||+.|...||++++|+|+||||+++++ +.+.   +..  .++.|||+|||||.++++++|++|+++|+||++
T Consensus       216 -~~~~~~a~~~~~~~~~~~~~i~L~DTy~~~~~~~~~~~~~~~~~~~~~~~gvR~DSGDp~~~~~~~~~~ld~~G~~~~~  294 (343)
T cd01567         216 -EEAAFEAFARWLPQFGGGLGIALIDTYDTDNGFLNALKLAKALGAGGGLLGVRLDSGDPVELIKKVRKHLDELGIDLNK  294 (343)
T ss_pred             -HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             -7899999999998668987799845653676654579999998544775267549998599999999999975999787


Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             0899738989999999999724897378633464314656666665567773216898
Q gi|254780455|r  323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCK  380 (418)
Q Consensus       323 k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyK  380 (418)
                      |+||+|||||.|++++++.++.++++++|||||+||||+         ++|++|+|||
T Consensus       295 ~~iv~S~~ld~e~~i~~~~~~~~~~~~~FGVGT~l~~~~---------~~~~l~~v~K  343 (343)
T cd01567         295 KKIIISGDLDTEEAIELLLEQGASPNDAFGVGTSLTNDL---------GRPPLGFVYK  343 (343)
T ss_pred             EEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCC---------CCCCCCEEEC
T ss_conf             389998999889999999973898753997085606799---------9975484339


No 10 
>KOG2511 consensus
Probab=100.00  E-value=0  Score=575.02  Aligned_cols=374  Identities=27%  Similarity=0.361  Sum_probs=312.3

Q ss_pred             CCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf             71001244011789999999998489965999999658875544000023699999999716999899999983777555
Q gi|254780455|r    9 DPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK   88 (418)
Q Consensus         9 ~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~   88 (418)
                      +|.+-|+||||+||+||+||||+.+|+.+++|.+++|++| +.+.|.+++||+++|+++.||+||+|||+||++.+|+  
T Consensus         3 e~~~vspL~tDlYkiTM~yA~wk~~~de~~vy~~~~R~np-f~g~~~~f~~LeE~irfl~N~~lt~eEi~~lkk~lP~--   79 (420)
T KOG2511           3 EPPMVSPLDTDLYKITMAYAVWKAKPDERVVYKYTNRSNP-FGGNYEAFNWLEEQIRFLANLKLTDEEIDYLKKELPY--   79 (420)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--
T ss_conf             9860235341689999999998508997247876403798-7740899988999999986357788899999976788--


Q ss_pred             CCCCCHHHHHHHHHCCCCCCEE-------EECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             5578988999975089984168-------733992699985487786778889999998888877531348667999999
Q gi|254780455|r   89 KQLFEPKFLSWLSDFQLPEYDL-------SHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYA  161 (418)
Q Consensus        89 ~~~~~~~fl~~L~~~~f~~~~~-------~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~  161 (418)
                         .++.|.+||+++.++-...       .+.|+-|.|+|+|||..|||+|||+|++|||.|++++.+.|.+...     
T Consensus        80 ---~eeaf~eyl~~ln~s~~~~~aIsegSvvf~k~pli~i~Gp~~~~~l~E~plLnLVs~A~~~~~da~~~re~q-----  151 (420)
T KOG2511          80 ---LEEAFYEYLRGLNCSDHPEEAISEGSVVFEKKPLIRIEGPWKVTILYEIPLLNLVSEAYFKFVDADWHREVQ-----  151 (420)
T ss_pred             ---CHHHHHHHHHHCCCCCCCHHHCCCCCEECCCCCEEEEECCHHHEEEEECHHHHHHHHHHHEEECCCCCHHCC-----
T ss_conf             ---719999998616877580644356743226886489734411246662358887646773343100030201-----


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf             99999998777674269975998424434797889999999984212120124788999972898767520489876400
Q gi|254780455|r  162 QAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA  241 (418)
Q Consensus       162 ~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~  241 (418)
                                     .....++|||+|||+|+   ++++.|++.+++|||+|||||++|++||||++||+||||||++.+
T Consensus       152 ---------------g~k~~~leFGtRR~rgp---~G~m~Askycy~ggf~~TSNV~~~k~ygip~~GT~aH~~v~~faS  213 (420)
T KOG2511         152 ---------------GEKAEFLEFGTRRRRGP---QGAMKASKYCYLGGFLGTSNVLFAKKYGIPVRGTVAHEWVMGFAS  213 (420)
T ss_pred             ---------------CCHHHHHHHHHHHCCCC---CCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf             ---------------10247766423430387---533001004565432341278889871999654220344531234


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHH-----HHCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             1220367865499999999996398-865986346898999998997-----3100243412888878999999999997
Q gi|254780455|r  242 ITRTDIETQNAPYQMMQQWNRLYDD-NLLIVLPDSFGTDFFLEHAPS-----WMTQWKGFRHDSASPIEGGEKIIAWWKK  315 (418)
Q Consensus       242 ~~~~~~~~~~~~~~a~~~~~~~yp~-~~~i~L~DTy~~~~~l~~~~~-----~~~~~~GVR~DSGD~~~~~~k~~~~l~~  315 (418)
                      +.+   -+.+++..|...|..++-. +.+++|+||++++.|++.+..     ++..+-|||+||||++++++|+|++|..
T Consensus       214 i~e---~~~~~~r~a~~k~~~~~~~~~~~~~Ltd~fs~Dv~~~~~~nf~Av~lAl~~~GvR~DSGdl~~~skkvr~~y~~  290 (420)
T KOG2511         214 IDE---IYDKANRIADGKWTCTFGASNVQTALTDTFSTDVFLKSFPNFCAVALALNDLGVRQDSGDLAEYSKKVRKHYCD  290 (420)
T ss_pred             HHH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEECCCCCHHHHHHHHHHHHHH
T ss_conf             789---99998764244325777788899998844427779753774212455542115222689989999999999987


Q ss_pred             CCCCC-CCEEEE---ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC-C------CCCCCCCCCC-EEEEEEE
Q ss_conf             79881-130899---738989999999999724897378633464314656666-6------6556777321-6898575
Q gi|254780455|r  316 MNCNP-QNKFLV---FSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCT-P------YQNLQTEKLQ-IVCKVTK  383 (418)
Q Consensus       316 ~Gidp-~~k~iv---~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~-~------~~~~~~~~l~-~VyKlve  383 (418)
                      .+.+| .+|.|+   +||+++++.+..+.++  ++.+++||||||||+|+...+ |      +|-.+ .|++ +||||-+
T Consensus       291 V~~~~K~~~~~m~~~A~N~~ne~ti~~lnkq--~~e~~aFGIGTnl~t~~q~~sqPikls~dvtkvS-iP~~k~~~rLfg  367 (420)
T KOG2511         291 VERDPKPSKGIMYSDALNVLNEITIDALNKQ--GGEVDAFGIGTNLTTDFQKNSQPIKLSEDVTKVS-IPGNKIVIRLFG  367 (420)
T ss_pred             HHCCCCCCCEEEEEECCCCHHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE-CCCCCEEEEEEC
T ss_conf             6416777623899842452118889999862--8903452044430012232468752345542530-356503556303


Q ss_pred             ECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             7681116732688752488899999999809666
Q gi|254780455|r  384 ANDKHAVKLSDDPAKTTGDISEIKRYLKIFKIKK  417 (418)
Q Consensus       384 ~~g~P~~KlSd~~~K~tg~~~~~~~~~~~~~~~~  417 (418)
                      .+|.|.+|||++..|.++++....+++.-|+-++
T Consensus       368 keGy~~vdI~~~e~ep~p~~~~~~~~khp~~~~~  401 (420)
T KOG2511         368 KEGYPLVDISDLENEPPPDPGQVLRVKHPLNSKR  401 (420)
T ss_pred             CCCCCEEEHHHCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             5785023532136899999660466514444444


No 11 
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=100.00  E-value=0  Score=454.72  Aligned_cols=322  Identities=17%  Similarity=0.151  Sum_probs=268.2

Q ss_pred             CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             95225656710012440117899999999984899659999996588755440000236999999997169998999999
Q gi|254780455|r    1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL   80 (418)
Q Consensus         1 m~~~~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL   80 (418)
                      |+++.+.++.-|.+-..||-|.+......-+.++|..|+++||.|++|  ...+.+++|++++++.+++.++   ++.. 
T Consensus         1 ~~~~~~~~~~~I~~G~~tD~YF~rT~~Il~~~g~n~~Vt~evf~r~~p--~~~~~v~~Gl~ev~~ll~~~~v---~V~a-   74 (343)
T PRK08662          1 MMRFYIASEEEIKSGKTTDIYFERTVEILEHAGIDPKVRAEVTASSLP--KGEWGVFAGLEEVLELLEGKPV---DVYA-   74 (343)
T ss_pred             CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCCCEEEECHHHHHHHHCCCCC---EEEE-
T ss_conf             965456898887568500899999999999859898399999981388--7665354329999998617995---4998-


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             83777555557898899997508998416873399269998548778677888999999888887753134866799999
Q gi|254780455|r   81 VENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLY  160 (418)
Q Consensus        81 ~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~  160 (418)
                                               -++...+.++||+|+|+||+.+++++||+||++||..+..+|             
T Consensus        75 -------------------------l~EG~~~~~~EPvl~I~gp~~~~~~lET~lL~~L~~~s~iAT-------------  116 (343)
T PRK08662         75 -------------------------LPEGTLFDPKEPVMRIEGPYLEFGIYETALLGILRHASGIAT-------------  116 (343)
T ss_pred             -------------------------ECCCCEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_conf             -------------------------079777559985799996199999999999988728889999-------------


Q ss_pred             HHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf             99999999877767-42699759984244347978899999999842121201247889999728987675204898764
Q gi|254780455|r  161 AQAKKKLWSKIIKL-KNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVA  239 (418)
Q Consensus       161 ~~~~~~~~~k~~~~-~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~  239 (418)
                               ++.++ .+++++++++||+||+|+..    +..+.|+|++|||+||||+.+|+.||+|+.|||||||||+|
T Consensus       117 ---------~A~r~~~aA~~~~vl~fG~Rr~h~~~----a~~~~rAA~iGG~~gtS~~~a~~~~g~~~~GTmpHAlI~~~  183 (343)
T PRK08662        117 ---------AAARIKEAAGDKPVLSFGARHLHPAI----APMADRAAYIGGCDGVSGVLGAELLGIKPSGTMPHALIIIF  183 (343)
T ss_pred             ---------HHHHHHHHCCCCCEEECCCCCCCHHH----HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHC
T ss_conf             ---------99999997599827815761238767----99999999752746623888998729998664403688773


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCC--HHHHHHHHHHHHCCCCEEECCC-----CCHHHHHHHHHH
Q ss_conf             0012203678654999999999963988-6598634689--8999998997310024341288-----887899999999
Q gi|254780455|r  240 AAITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSFG--TDFFLEHAPSWMTQWKGFRHDS-----ASPIEGGEKIIA  311 (418)
Q Consensus       240 ~~~~~~~~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~--~~~~l~~~~~~~~~~~GVR~DS-----GD~~~~~~k~~~  311 (418)
                      ++           +.+||++|.++||++ +.|+|+|||+  ....++.+..++.+..|||+||     ||+.++++++|+
T Consensus       184 g~-----------~~~A~~af~~~~p~~~p~i~LVDty~d~~~~al~va~~lg~~l~gVRLDT~~~r~Gd~~~l~~~vR~  252 (343)
T PRK08662        184 GD-----------QVEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSRRGNFRKIVEEVRW  252 (343)
T ss_pred             CC-----------HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             89-----------9999999999679998759999677724689999999848657889846898778877999999999


Q ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEE
Q ss_conf             99977988113089973898999999999972489737863346431465666666556777321689857576811167
Q gi|254780455|r  312 WWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVK  391 (418)
Q Consensus       312 ~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~K  391 (418)
                      .||++|++  ..+|++|+||||++|.++.+.     +|+|||||+|            ...|+++++|||||++|+|++|
T Consensus       253 ~LD~~G~~--~vkIv~Sgglde~~I~~l~~~-----vD~fGVGt~l------------~~~~~~d~t~DiVevdG~p~aK  313 (343)
T PRK08662        253 TLDLHGYS--HVKIFVSGGLDEEDIRELRDV-----VDGFGVGTSI------------SFAPPVDFSMDIVEVEGKPIAK  313 (343)
T ss_pred             HHHHCCCC--CCEEEEECCCCHHHHHHHHHH-----CCEEEECCCC------------CCCCCCCEEEEEEEECCEEEEC
T ss_conf             85455799--828999489999999999864-----8689606655------------7898877589999999986220


Q ss_pred             EECCCCCCCCC-HHHHHHH
Q ss_conf             32688752488-8999999
Q gi|254780455|r  392 LSDDPAKTTGD-ISEIKRY  409 (418)
Q Consensus       392 lSd~~~K~tg~-~~~~~~~  409 (418)
                      .+..|||.+.| .+++|.|
T Consensus       314 ~Gr~~g~~~~p~lk~vr~~  332 (343)
T PRK08662        314 RGKLPGVRENPKLKEIREY  332 (343)
T ss_pred             CCCCCCCCCCCHHHHHHHH
T ss_conf             3578777768018999999


No 12 
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=100.00  E-value=0  Score=449.61  Aligned_cols=290  Identities=19%  Similarity=0.142  Sum_probs=242.4

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             40117899999999984899659999996588755440000236999999997169998999999837775555578988
Q gi|254780455|r   16 LDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPK   95 (418)
Q Consensus        16 LdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~   95 (418)
                      +.||.|+++|++.++++++|..|+|+||+|++|     |++++||+++++++++++|+   +..                
T Consensus         2 ~~TD~Yfl~t~~il~~~~~n~~v~~e~f~r~~p-----~~v~aGl~ev~~~l~~~~~~---v~a----------------   57 (302)
T cd01571           2 RFTDVYFLRTRKILEKKGPNPTVTMEFTQRSLP-----WAVLCGLEEVLALLEGLPVK---VYA----------------   57 (302)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-----CEEEECHHHHHHHHHCCCEE---EEE----------------
T ss_conf             511799999999999709997499999973488-----87875299999998459807---998----------------


Q ss_pred             HHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99997508998416873399269998548778677888999999888887753134866799999999999998777674
Q gi|254780455|r   96 FLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK  175 (418)
Q Consensus        96 fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  175 (418)
                                -++...+.+++|+++|+||+.+++++||++|++||..+..+|.                      +.++.
T Consensus        58 ----------~~EG~~v~p~epvl~I~Gp~~~~~~lEt~lLn~l~~~S~IAT~----------------------a~r~v  105 (302)
T cd01571          58 ----------LPEGTIFNPKEPVLRIEGPYQDFGELETAILGILARASSIATN----------------------AARVK  105 (302)
T ss_pred             ----------CCCCCEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH
T ss_conf             ----------0898884599857999971999999999999887588899999----------------------99999


Q ss_pred             -CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             -2699759984244347978899999999842121201247889999728987675204898764001220367865499
Q gi|254780455|r  176 -NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPY  254 (418)
Q Consensus       176 -~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~  254 (418)
                       ++++.++++||+||+|+..   +.+ ..+|+++|||+||||+++++.||+|+.|||||||||+|+..          +.
T Consensus       106 ~aA~~~~v~~fg~Rr~~p~~---~~~-~~rAa~iGG~~~~s~~la~~~~g~~~~GTm~Hs~I~~~~~~----------~~  171 (302)
T cd01571         106 LAAGDKPVISFGDRRDHPAI---QPM-DGRAAYIGGCDGVSTVLGAELLGEKPSGTMPHALIQIFGGD----------QV  171 (302)
T ss_pred             HHCCCCCEEEECCCCCCHHH---HHH-HHHHHHEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHCCCC----------HH
T ss_conf             97499938974453359657---899-86886502823010578887659997455342667443895----------79


Q ss_pred             HHHHHHHHHCCCC-CEEEEECCCCH--HHHHHHHHHHHCCCCEEECCC-----CCHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             9999999963988-65986346898--999998997310024341288-----887899999999999779881130899
Q gi|254780455|r  255 QMMQQWNRLYDDN-LLIVLPDSFGT--DFFLEHAPSWMTQWKGFRHDS-----ASPIEGGEKIIAWWKKMNCNPQNKFLV  326 (418)
Q Consensus       255 ~a~~~~~~~yp~~-~~i~L~DTy~~--~~~l~~~~~~~~~~~GVR~DS-----GD~~~~~~k~~~~l~~~Gidp~~k~iv  326 (418)
                      +|+++|.++||.+ ..|+|+|||+.  ...++.+.....+..|||+||     ||+.++++++|+.||++|+.  ..+|+
T Consensus       172 ~A~~af~~~~p~~~~~i~LvDty~~~~~~al~~~~~~~~~l~gVRlDs~~~~~G~~~~l~~~vR~~LD~~G~~--~vkI~  249 (302)
T cd01571         172 EAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDIRGYK--HVKIF  249 (302)
T ss_pred             HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEE
T ss_conf             9999999867788976999965546688999999974600389980799875877999999999999766988--74899


Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEE
Q ss_conf             7389899999999997248973786334643146566666655677732168985757681116732
Q gi|254780455|r  327 FSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLS  393 (418)
Q Consensus       327 ~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlS  393 (418)
                      +||||||++|.++.++  +  +|+|||||+|            .+.|+++++|||||+||+|++|..
T Consensus       250 aSggl~e~~I~~l~~~--g--ID~~GVGt~l------------~~ap~ld~~~dlVe~~G~p~~K~G  300 (302)
T cd01571         250 VSGGLDEEDIKELEDV--G--VDAFGVGTAI------------SKAPPVDFTMDIVEVNGQPIAKRG  300 (302)
T ss_pred             EECCCCHHHHHHHHHC--C--CCEEECCCCC------------CCCCCCCEEEEEEEECCEEEECCC
T ss_conf             9699999999999857--9--9999818543------------799888868999999997711245


No 13 
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=409.59  Aligned_cols=307  Identities=16%  Similarity=0.111  Sum_probs=247.0

Q ss_pred             CCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             10012440117899999999984899659999996588755440000236999999997169998999999837775555
Q gi|254780455|r   10 PIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKK   89 (418)
Q Consensus        10 piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~   89 (418)
                      .-|.+-.-||-|.+......-+.++|..|+++||.|+++      ++++|+.+++++|+.+.-..               
T Consensus        17 ~~i~~G~~td~YF~rT~~il~~~~~~~~Vt~~~f~r~~~------~v~~G~~e~~~lL~~~~~~~---------------   75 (355)
T PRK07188         17 ERIGEGWFSAVYFLKTREIIEKFNPNNIVTMQFFQRREN------AVLCGTDEVIALLKFFAKNP---------------   75 (355)
T ss_pred             HHHHCCCEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCC------EEEECHHHHHHHHHHCCCCC---------------
T ss_conf             788578121788999999999868999599999876898------38773999999998453567---------------


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEECC------CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             5789889999750899841687339------9269998548778677888999999888887753134866799999999
Q gi|254780455|r   90 QLFEPKFLSWLSDFQLPEYDLSHKK------GQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQA  163 (418)
Q Consensus        90 ~~~~~~fl~~L~~~~f~~~~~~~~e------g~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~  163 (418)
                                     -..++++++|      +||+|+|+||+.+++++||+||++||..+..+|.               
T Consensus        76 ---------------~~v~V~al~EG~~v~~~EPvl~I~G~~~~~~~lET~iL~~L~~~s~iAT~---------------  125 (355)
T PRK07188         76 ---------------EKLKIYYLKDGDIINPKEPVLEIEGPYENFGFLEGIIDGILARRTSVATN---------------  125 (355)
T ss_pred             ---------------CCEEEEEECCCCEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf             ---------------73059992798772699847999962999999999999876478899999---------------


Q ss_pred             HHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf             99999877767-42699759984244347978899999999842121201247889999728987675204898764001
Q gi|254780455|r  164 KKKLWSKIIKL-KNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAI  242 (418)
Q Consensus       164 ~~~~~~k~~~~-~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~  242 (418)
                             +.++ .+++++++++||+||+|.. .|   ....||+++|||+||||+.+|+.||+|+.|||||||||+|...
T Consensus       126 -------A~r~~~aA~~k~vl~fg~R~~h~~-~a---~~~~rAA~iGG~~g~Sn~~a~~~~g~~~~GTMpHAlI~~f~Gd  194 (355)
T PRK07188        126 -------AYNVVQAANEKPVIFMGDRADHYL-LQ---AGDGYAAYIGGISAFSTQAQNEWWGDSGMGTMPHALIQMFNGD  194 (355)
T ss_pred             -------HHHHHHHCCCCEEEECCCCCCCHH-HH---HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHCCCC
T ss_conf             -------999998649791882147565801-35---8989999974974111387897559998664002555302788


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHHHHCCCCEEECCC---------------------
Q ss_conf             220367865499999999996398865986346898--999998997310024341288---------------------
Q gi|254780455|r  243 TRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT--DFFLEHAPSWMTQWKGFRHDS---------------------  299 (418)
Q Consensus       243 ~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~--~~~l~~~~~~~~~~~GVR~DS---------------------  299 (418)
                                +.+|+++|.++||++.+++|+|||+.  ...++.+..++.++.|||+||                     
T Consensus       195 ----------~~~A~~af~~~~P~~~~i~LvD~~~d~i~~al~va~~~g~~L~gVRLDTsg~l~d~~~~~~~~~~~~~~~  264 (355)
T PRK07188        195 ----------VVEACKAYAKTFPEDELVALIDYNNDVITDALKVAREFGDKLKGVRVDTSKNLIDKYFIRNPEVLGTFDP  264 (355)
T ss_pred             ----------HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCC
T ss_conf             ----------8999999998589998799995885799999999998386677899778762222000112234565222


Q ss_pred             -CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             -8878999999999997798811308997389899999999997248973786334643146566666655677732168
Q gi|254780455|r  300 -ASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIV  378 (418)
Q Consensus       300 -GD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~V  378 (418)
                       ||..++++++|+.||++|+.  ..+|++|+||||++|..+.+  .++++|+|||||+|.+             ...+..
T Consensus       265 ~Gv~~~li~~vR~~LD~aG~~--~vKIvaSgglde~~I~~l~~--~gapID~fGVGt~l~~-------------~~~~~t  327 (355)
T PRK07188        265 YGVNPYLIFALRKALDENGGK--HVKIIVSSGFDEKKIKEFEK--QNVPVDIYGVGSSLLK-------------INIHFT  327 (355)
T ss_pred             CCCHHHHHHHHHHHHHHCCCC--CCEEEEECCCCHHHHHHHHH--CCCCEEEEEECCCCCC-------------CCCCCE
T ss_conf             574899999999999767998--71799968999999999997--7997018950676678-------------877605


Q ss_pred             EEEEEECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             9857576811167326887524888999999
Q gi|254780455|r  379 CKVTKANDKHAVKLSDDPAKTTGDISEIKRY  409 (418)
Q Consensus       379 yKlve~~g~P~~KlSd~~~K~tg~~~~~~~~  409 (418)
                      .++||+||+|++|.+    |.-++++..+++
T Consensus       328 ~DiVevdG~p~aK~G----R~~~~n~rl~~v  354 (355)
T PRK07188        328 GDAVELNGKKEAKAG----RKYRPNPRLERV  354 (355)
T ss_pred             EEEEEECCEEHHHCC----CCCCCCCCHHHC
T ss_conf             779999998632137----778999551206


No 14 
>pfam04095 NAPRTase Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase (EC:2.4.2.11) is the rate limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also includes Pre-B cell enhancing factor that is a cytokine. This family is related to Quinolinate phosphoribosyltransferase pfam01729.
Probab=100.00  E-value=0  Score=418.92  Aligned_cols=230  Identities=37%  Similarity=0.468  Sum_probs=195.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHH-----
Q ss_conf             759984244347978899999999842121201247889999728987675204898764001220367865499-----
Q gi|254780455|r  180 LKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPY-----  254 (418)
Q Consensus       180 ~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~-----  254 (418)
                      ++++|||+|||||+++|..+.    +|++++|+|||||+||++|+|||+|||||||+|+|+++......++.++.     
T Consensus         1 fkl~dFG~RR~~s~~~~~~~~----~A~l~gf~GTSNv~a~~~~~Ip~~GT~aH~~~~~~~e~~~~~~~~~~~~~~~~~~   76 (243)
T pfam04095         1 FKLHDFGTRRRSSLESQEIVG----SAHLVNFLGTSNVLAAAGYSIPAAGTSAHEWWGAFQELDAFRNMLEQFQKGKLSV   76 (243)
T ss_pred             CCCCCCCCCCCCCHHHHHHHH----HHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCCCHHHHHHHHHHCCCCCCEE
T ss_conf             930506888879879999999----9986278300079999866999654034041222265579999999655688244


Q ss_pred             --HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCC----CEEEEEC
Q ss_conf             --9999999963988659863468989999989973100243412888878999999999997798811----3089973
Q gi|254780455|r  255 --QMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQ----NKFLVFS  328 (418)
Q Consensus       255 --~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~----~k~iv~S  328 (418)
                        .+++.|..+| +.+++.|.|++.+..|++.+.   .++.|||+|||||.++++++|++|+++|++|.    +|.||+|
T Consensus        77 ~~d~yd~~~~~~-~~l~~~L~d~i~~~~~l~~~~---~~~~gvR~DSGD~~~~~~~~~~~~~~~g~~~~k~~~~~~Ii~s  152 (243)
T pfam04095        77 VSDALDLWLAEY-GNLGIALTDLVGTDAFLRDFP---LYFLGVRPDSGDPVEWGEKLIAHFGSTNIDGYKVLNTKRLIFS  152 (243)
T ss_pred             EHHHHHHHHHHH-CCCHHHCCHHHHHHHHHHHCC---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf             148999899885-510111552430378898568---8750464588876899999999999739985567882699977


Q ss_pred             CCCCHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCC-CHHHH
Q ss_conf             89899999999997248-97378633464314656666665567773216898575768111673268875248-88999
Q gi|254780455|r  329 DNLDVDSIIYTYKHFEN-RVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTG-DISEI  406 (418)
Q Consensus       329 d~Ld~e~i~~l~~~~~~-~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~tg-~~~~~  406 (418)
                      |||||++|.+|++++++ +++++|||||+|+|++...+.....+.+++++|+|+++|+|+|++|+||+++|.|| ++...
T Consensus       153 d~Lde~~i~~l~~~~~~~~~~~~FGiGt~L~t~~~~~~~~~v~K~~al~i~~k~v~i~g~P~~klS~~~~K~~~~dp~~~  232 (243)
T pfam04095       153 DGLDVEKIIEILEHLKGNGFNIAFGIGTNLTQDLNRDTLGFAYKLTPLNIVIKLVEVNGDPVTKLSDSSGKGRCGDPAFV  232 (243)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCCCEEECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99999999999999975487058851643130588886455332265156518998379855235788777747998999


Q ss_pred             HHHHHHCCCCC
Q ss_conf             99999809666
Q gi|254780455|r  407 KRYLKIFKIKK  417 (418)
Q Consensus       407 ~~~~~~~~~~~  417 (418)
                      .+++++|++.+
T Consensus       233 ~~~r~~~~~~~  243 (243)
T pfam04095       233 DLLRRVFGNGE  243 (243)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999858899


No 15 
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=100.00  E-value=2.6e-40  Score=295.87  Aligned_cols=356  Identities=17%  Similarity=0.146  Sum_probs=258.9

Q ss_pred             CHHHHCCHHHHHHHHHHHHHHCC-CCEEEEE-EEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             01244011789999999998489-9659999-996588755440000236999999997169998999999837775555
Q gi|254780455|r   12 ISSLLDTDFYKILMLQLIWKFYP-DIKVTFS-LFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKK   89 (418)
Q Consensus        12 I~SlLdTD~YkltM~~a~~~~~~-~~~v~f~-~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~   89 (418)
                      ++.||+||.||+    +||.||| ++..+|+ +..|+..  ....++|+|||..|+..-.-.+|.++++--+...-.++.
T Consensus         5 ~N~iL~tDsYK~----sH~~qYP~gt~~v~sy~e~R~g~--~~d~vvffGLQ~~lk~yL~~~it~~~i~ea~~~~~~h~~   78 (462)
T PRK09198          5 LNPLLNTDSYKA----SHRLQYPPGTTYLYSYLESRSGG--RYDKTVFFGLQYFIKEYLIQPITHAMIDDAEDILDAHGE   78 (462)
T ss_pred             ECHHHHCCCCCC----CHHHHCCCCCCEEEEEEEECCCC--CCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             003351353102----44866899864589989854798--888559997599999998450757668899999998676


Q ss_pred             CCCCHHHHHHHHH--CCCCCCEEEECCCCE------EEEEECCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHH
Q ss_conf             5789889999750--899841687339926------999854877867788899999988-8887753134866799999
Q gi|254780455|r   90 QLFEPKFLSWLSD--FQLPEYDLSHKKGQY------VLNFHGLWKDVTLWEIPSLIIIST-LYSRITVRSMNPFSVDLLY  160 (418)
Q Consensus        90 ~~~~~~fl~~L~~--~~f~~~~~~~~eg~~------~i~ieGp~~~~~l~EtplL~iine-~~~~~~~~~~~~~~~~~~~  160 (418)
                      +++...+-.-+..  -.+|.++.++|||.+      +++|+++..+|.|+-.+|.++|+. +|++.|.++     ....+
T Consensus        79 ~Fn~~gw~~i~~~~~G~LPi~I~AvpEGt~Vp~~~pl~tienTdp~~~WL~nylET~Ll~~iWyp~TvAT-----~s~~~  153 (462)
T PRK09198         79 PFNEAGWEKIVDEYGGYLPIRIKAVPEGSVVPVHNVLMTIENTDPEFFWLPNYLETLLLRNVWYPSTVAT-----ISWEY  153 (462)
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_conf             0307889999997189675599974787442388746999938987403888999999987466589999-----99999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHH----HHHCCCCCCCC----CC
Q ss_conf             99999999877767426997599842443479788999999998421212012478899----99728987675----20
Q gi|254780455|r  161 AQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALL----AMNYKINAIGT----SA  232 (418)
Q Consensus       161 ~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~a----a~~~gi~~~GT----ma  232 (418)
                      .....+...++..-.+.-+++++|||+|+++|.+  .+++.+  +|++.+|.||+++.+    .+.|+-+.+|.    ++
T Consensus       154 kkii~~yl~~T~d~~~~l~f~lHDFg~RG~ss~e--sa~~gg--~aHL~~F~GTDTv~a~~~~~~yY~~~~~g~SIpAsE  229 (462)
T PRK09198        154 KQLIRQYLEKTADDLEFLPFQLHDFGARGMSSLE--SAAIGG--AAHLVSFLGTDTIAALLAAEEYYAEGMAGFSIPAAE  229 (462)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHH--HHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             9999999985188833466521366656788678--889755--788432577552888999998669975114543133


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHHCC-------CCEEECCCCCHHH
Q ss_conf             48987640012203678654999999999963-988659863468989999989973100-------2434128888789
Q gi|254780455|r  233 HELPMVAAAITRTDIETQNAPYQMMQQWNRLY-DDNLLIVLPDSFGTDFFLEHAPSWMTQ-------WKGFRHDSASPIE  304 (418)
Q Consensus       233 Hs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~y-p~~~~i~L~DTy~~~~~l~~~~~~~~~-------~~GVR~DSGD~~~  304 (418)
                      ||.|++||.         +.|.+||+.+++.| |+....+++||||+++++.+.-...+.       -..||+|||||..
T Consensus       230 HStmts~g~---------~~E~~af~n~l~~f~p~~i~svVsDSyD~~~a~~~i~~~Lk~~I~~r~g~lViRPDSGDpv~  300 (462)
T PRK09198        230 HSVMTSWGR---------EGELEAYRNMIEQGYPGGIVSVVSDSYDLWNAITEIWPELKDEILARGAKLVIRPDSGDPVD  300 (462)
T ss_pred             HHEEECCCC---------CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf             320211266---------60899999999984899789999440569999999999999999726982898079998377


Q ss_pred             HHHHHHHHHHH-CCCCC---------CCEEEEECCCCCHHHHHHHHHHHCCC----CEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99999999997-79881---------13089973898999999999972489----737863346431465666666556
Q gi|254780455|r  305 GGEKIIAWWKK-MNCNP---------QNKFLVFSDNLDVDSIIYTYKHFENR----VQMIFGWGTNLTNDFDGCTPYQNL  370 (418)
Q Consensus       305 ~~~k~~~~l~~-~Gidp---------~~k~iv~Sd~Ld~e~i~~l~~~~~~~----~~~~fGIGT~Lt~d~~~~~~~~~~  370 (418)
                      ...++++.|.+ +|..-         ....+|.+||+|.++|.+|++....+    .+++||||..|         ++..
T Consensus       301 iv~~~l~~L~~~FG~t~N~KGYKVL~~~vrvIqGDgI~~~~i~~Il~~l~~~G~sa~Ni~FG~Gg~l---------lQ~~  371 (462)
T PRK09198        301 IICGALELLDDIFGSTVNSKGYKVLNKHVGLIQGDGITLERIEAILEALKAKGFAADNIVFGMGGAL---------LQYV  371 (462)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHH---------HCCC
T ss_conf             7999999999984971057752604764216855873999999999999975986424355115344---------3036


Q ss_pred             CCCCCCEEEEEE--EECCC--CEEEE-ECCCCCCC
Q ss_conf             777321689857--57681--11673-26887524
Q gi|254780455|r  371 QTEKLQIVCKVT--KANDK--HAVKL-SDDPAKTT  400 (418)
Q Consensus       371 ~~~~l~~VyKlv--e~~g~--P~~Kl-Sd~~~K~t  400 (418)
                      ..+.++.+||..  ++||+  ++.|= -.|++|..
T Consensus       372 ~RDT~~fA~K~sa~~v~g~~~~v~K~PiTD~gKkS  406 (462)
T PRK09198        372 NRDTQGFAMKASAIEVNGEWIDIFKDPITDQGKKS  406 (462)
T ss_pred             CCCCCCCEEEEEEEEECCEEEEEEECCCCCCCCCC
T ss_conf             64300412057778888987674207888996557


No 16 
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=100.00  E-value=1.8e-39  Score=290.10  Aligned_cols=344  Identities=17%  Similarity=0.140  Sum_probs=243.0

Q ss_pred             HHCCHHHHHHHHHHHHHHCCC-CEEEEE-EEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHH-HHHHHHCCCCCCC--
Q ss_conf             440117899999999984899-659999-99658875544000023699999999716999899-9999837775555--
Q gi|254780455|r   15 LLDTDFYKILMLQLIWKFYPD-IKVTFS-LFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKE-RKWLVENSFYGKK--   89 (418)
Q Consensus        15 lLdTD~YkltM~~a~~~~~~~-~~v~f~-~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~ee-i~yL~~~~~~~~~--   89 (418)
                      ||.||.||+    +||.|||. +..+|+ +..|...  ....++|+|||..|+.+..-.|++++ ++-.+.....+..  
T Consensus         1 iL~tDsYK~----sH~~qYP~gt~~v~sy~e~R~~~--~~d~vvffGlQ~~lk~yL~~~~~~~~~i~~a~~v~~~h~~~~   74 (407)
T cd01569           1 LLATDSYKV----SHRLQYPPGTTAVYSYLEPRGGK--YYDQTVFFGLQYFLKKYLIDPVNRDFFIDEAEAVFEAHFGMN   74 (407)
T ss_pred             CCCCCCCCC----CHHHHCCCCCCEEEEEEEECCCC--CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             976430201----35866899875589999855887--778669972899999999876305765648999999846544


Q ss_pred             -CCCCHHHHHHHH---HCCCCCCEEEECCCCE------EEEEECCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHH
Q ss_conf             -578988999975---0899841687339926------999854877867788899999988-88877531348667999
Q gi|254780455|r   90 -QLFEPKFLSWLS---DFQLPEYDLSHKKGQY------VLNFHGLWKDVTLWEIPSLIIIST-LYSRITVRSMNPFSVDL  158 (418)
Q Consensus        90 -~~~~~~fl~~L~---~~~f~~~~~~~~eg~~------~i~ieGp~~~~~l~EtplL~iine-~~~~~~~~~~~~~~~~~  158 (418)
                       -.|...-++++.   +..+|.++.++|||.+      +++|+++..++.|+-.+|.++|+. +|++.|.++     ...
T Consensus        75 ~~~fn~~gw~~I~~~h~G~LPi~I~AvpEGt~Vp~~~pl~tvenT~p~~~WL~nylET~Ll~~iWyp~TvAT-----~s~  149 (407)
T cd01569          75 DLPFNEDGWRHILELHDGYLPIEIRAVPEGTVVPTKNVLMTVENTDPDFFWLTNYLETILLRNVWYPSTVAT-----ISR  149 (407)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHH
T ss_conf             556338889999997499763599985898663489867999818987425888999999987566588999-----999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHH---HH--HCCCCCCC----
Q ss_conf             9999999999877767426997599842443479788999999998421212012478899---99--72898767----
Q gi|254780455|r  159 LYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALL---AM--NYKINAIG----  229 (418)
Q Consensus       159 ~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~a---a~--~~gi~~~G----  229 (418)
                      .+.....+...++..-.+.-+++++|||+|+++|.+  .+++.+  +|++.+|.||+++.+   ++  .++-+..|    
T Consensus       150 ~~k~ii~~yl~~T~d~~~~l~f~lHDFg~RG~ss~e--sA~~gg--~AHL~~F~GTDTi~a~~~a~~~y~~~~~~g~SIp  225 (407)
T cd01569         150 EYKKILRKYAKETSDNLEFLPFQLHDFGMRGMSSLE--SAALGG--AAHLVNFKGTDTIPALDAAYAYYYEDPMAGFSIP  225 (407)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHH--HHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCCC
T ss_conf             999999999985178723453201476656788678--899878--9998627883178889999974367764011333


Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCC-------CCEEECCCCCH
Q ss_conf             52048987640012203678654999999999963988659863468989999989973100-------24341288887
Q gi|254780455|r  230 TSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQ-------WKGFRHDSASP  302 (418)
Q Consensus       230 TmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~-------~~GVR~DSGD~  302 (418)
                      ..+||.+++++.         +.|.+||+++++.||+....+++||||.++++.+..+.++.       -..||+|||||
T Consensus       226 AsEHStmts~g~---------e~E~~af~n~l~~fp~~~~siVsDSyD~~~~~~~~~~~Lk~~I~~r~g~lViRPDSGDp  296 (407)
T cd01569         226 AAEHSTMTAWGR---------ERELEAFRNLLEQFGPGIVSVVSDSYDFWNALTLWGPRLKDEILARGGTLVIRPDSGDP  296 (407)
T ss_pred             CHHHEEEEECCC---------CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf             201115664375---------54999999999977987399951513577779999999999998379829994799983


Q ss_pred             HHHHHHHHHHHHHC-CCCCC---------CEEEEECCCCCHHHHHHHHHHHCCC----CEEEEEECCCCCCCCCCCCCCC
Q ss_conf             89999999999977-98811---------3089973898999999999972489----7378633464314656666665
Q gi|254780455|r  303 IEGGEKIIAWWKKM-NCNPQ---------NKFLVFSDNLDVDSIIYTYKHFENR----VQMIFGWGTNLTNDFDGCTPYQ  368 (418)
Q Consensus       303 ~~~~~k~~~~l~~~-Gidp~---------~k~iv~Sd~Ld~e~i~~l~~~~~~~----~~~~fGIGT~Lt~d~~~~~~~~  368 (418)
                      .....++++.|.+. |..-+         ...+|.+||+|.++|.+|++....+    .+++||||..|         ++
T Consensus       297 ~~ii~~~l~~L~~~FG~t~N~KGYKvL~~~vriIqGDgI~~~~i~~Il~~l~~~G~sa~Ni~FG~Gg~l---------lQ  367 (407)
T cd01569         297 VDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILERLKAKGFASENIVFGMGGGL---------LQ  367 (407)
T ss_pred             HHHHHHHHHHHHHHHCCEECCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHEEEECCHHH---------HC
T ss_conf             788998999999984872157751614774237854886999999999999977983142267416777---------50


Q ss_pred             CCCCCCCCEEEEEE--EECCC--CEEE
Q ss_conf             56777321689857--57681--1167
Q gi|254780455|r  369 NLQTEKLQIVCKVT--KANDK--HAVK  391 (418)
Q Consensus       369 ~~~~~~l~~VyKlv--e~~g~--P~~K  391 (418)
                      ....+.++.+||..  ++||+  ++.|
T Consensus       368 ~~~RDT~~fA~K~s~~~v~G~~~~v~K  394 (407)
T cd01569         368 KVTRDTQGFAMKASAIEINGKWRDVFK  394 (407)
T ss_pred             CCCCCHHHHHHEEEEEEECCEEEEEEE
T ss_conf             377521234462556888999877444


No 17 
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=100.00  E-value=1.2e-37  Score=277.68  Aligned_cols=275  Identities=22%  Similarity=0.168  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             17899999999984899659999996588755440000236999999997169998999999837775555578988999
Q gi|254780455|r   19 DFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLS   98 (418)
Q Consensus        19 D~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~   98 (418)
                      |+|+++|.|+|  ..|+.+++|+|++|+++     +.+++|++++++.++.++|.....                     
T Consensus         1 D~y~~~~~~~~--~~~~~~~~~~~~~R~~~-----~gv~~G~~~~~~~l~~~~~~~~~~---------------------   52 (281)
T cd00516           1 DLYKLTMIQAY--PPPDTRATAEFTAREDP-----YGVLAGLEEALELLELLRFPGPLV---------------------   52 (281)
T ss_pred             CCHHHHHHHHC--CCCCCEEEEEEEEECCC-----CEEEECHHHHHHHHHHCCCCCCEE---------------------
T ss_conf             90788798743--89998899999997599-----989925899999999669998479---------------------


Q ss_pred             HHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             97508998416873399269998548778677888999999888887753134866799999999999998777674269
Q gi|254780455|r   99 WLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFS  178 (418)
Q Consensus        99 ~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~  178 (418)
                          ...-++...+.+|+++++|+|||.+++++|+++|+++++++..+|.+..               ...++    ...
T Consensus        53 ----~~~~~eG~~v~~~~~il~i~G~~~~~~~~Er~~Ln~l~~~sgiAT~t~~---------------~v~~~----~~~  109 (281)
T cd00516          53 ----ILAVPEGTVVEPGEPLLTIEGPARELLLLERVLLNLLQRLSGIATATAR---------------YVEAA----KGA  109 (281)
T ss_pred             ----EEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH----CCC
T ss_conf             ----9977999992699889999983999999999999999999999999999---------------99984----557


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             97599842443479788999999998421212012478899997289876752048987640012203678654999999
Q gi|254780455|r  179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQ  258 (418)
Q Consensus       179 ~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~  258 (418)
                      ++++.+|||||+++    +..+...+|+..||+.++||.+.++.+..++.|||+|||+|++.            +..|+.
T Consensus       110 ~~~~~~~~TRkt~p----~~r~~~~~Av~~GG~~~hr~~l~d~~li~~nh~t~~h~~~~~~~------------~~~a~~  173 (281)
T cd00516         110 NTKVHDFGTRKTTP----GLRLLEKYAVLIGGGDGHRNGLSDAILIKDNHGTMAHSIIQAFG------------ELAAVK  173 (281)
T ss_pred             CCCEEEEECCCCCH----HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHCCCHHHCCC------------HHHHHH
T ss_conf             99649920567785----06999999998468655216541103353207654375553146------------999999


Q ss_pred             HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEECCCC-----CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf             99996398865986346898999998997310-0243412888-----87899999999999779881130899738989
Q gi|254780455|r  259 QWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMT-QWKGFRHDSA-----SPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLD  332 (418)
Q Consensus       259 ~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~-~~~GVR~DSG-----D~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld  332 (418)
                      ++.+.+|. ..++++||++.+ +.+....... +.+|||+|||     +++.+..+.+++|+..+.  .+++|++|||+|
T Consensus       174 ~~~~~~~~-~~~~~idve~~~-~~~~~~~~~~~~~~~IrlD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SGgi~  249 (281)
T cd00516         174 ALRRWLPE-LFIALIDVEVDT-LEEALEAAKAGGADGIRLDSGSPEELDPAVLILKARAHLDGKGL--PRVKIEASGGLD  249 (281)
T ss_pred             HHHHHCCC-CCCEEEEEEECC-HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCC
T ss_conf             99986787-760269999788-99999999549999999797995889999999999987632578--977999979999


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             999999999724897378633464314656666665567773216898
Q gi|254780455|r  333 VDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCK  380 (418)
Q Consensus       333 ~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyK  380 (418)
                      ++.|....+.  +  +|.|||||.+++            .|++++++|
T Consensus       250 ~~~i~~~a~~--g--vd~i~iG~~~~~------------~~~ldi~~k  281 (281)
T cd00516         250 EENIRAYAET--G--VDVFGVGTLLHS------------APPLDIVLK  281 (281)
T ss_pred             HHHHHHHHHC--C--CCEEEECCCCCC------------CCCCCEECC
T ss_conf             9999999967--9--899993822178------------841667739


No 18 
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.48  E-value=0.00011  Score=51.53  Aligned_cols=246  Identities=13%  Similarity=0.085  Sum_probs=142.2

Q ss_pred             CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf             99659999996588755440000236999999997169998999999837775555578988999975089984168733
Q gi|254780455|r   34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK  113 (418)
Q Consensus        34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~  113 (418)
                      ++..++..+..|.+       ++++|+......++.+..   ++++                         +-.+...+.
T Consensus        28 ~~~~~~a~i~are~-------gV~~G~~~a~~i~~~~~~---~~~~-------------------------~~~dG~~v~   72 (279)
T PRK08385         28 EDMNASAVIIAKQE-------GVIAGVEEARALFEHFGV---AVEV-------------------------KKRDGETVK   72 (279)
T ss_pred             CCCEEEEEEEECCC-------EEEECHHHHHHHHHHCCC---EEEE-------------------------ECCCCCEEC
T ss_conf             99669999997899-------899869999999997498---8999-------------------------928898906


Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf             99269998548778677888999999888887753134866799999999999998777674269975998424434797
Q gi|254780455|r  114 KGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSL  193 (418)
Q Consensus       114 eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~  193 (418)
                      +|+++++++||.......|..+||++..+...+|               ...++..++.    ..+.++-=++||..++-
T Consensus        73 ~g~~i~~i~G~a~~il~~ER~~LN~Lq~~SGIAT---------------~T~~~v~~~~----~~~~~~~i~~TRKT~PG  133 (279)
T PRK08385         73 AGEVILELKGNARAILLVERTALNIIGRMSGIAT---------------ETRKLVDLVR----AVNPKVRVAGTRKTLPG  133 (279)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH----HCCCCEEEEECCCCCCC
T ss_conf             9989999998789999999999999999999999---------------9999999986----13997299854777854


Q ss_pred             HHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCC----CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             88999999998421212012478899997289----87675204898764001220367865499999999996398865
Q gi|254780455|r  194 TWQKWCIEALQEGIKDSFLGTSNALLAMNYKI----NAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLL  269 (418)
Q Consensus       194 ~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi----~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~  269 (418)
                      .    -.-..+|...||..-       +++|+    ...-  .|-..   ...           ..++..+-+..|...-
T Consensus       134 ~----R~l~k~AV~~GGg~~-------HR~~Lsd~iLiKd--NHi~~---~~~-----------~~av~~~r~~~~~~~I  186 (279)
T PRK08385        134 L----RLIDKKAIMIGGGEP-------HRFSLSDAILIKD--NHLAL---VPL-----------EEAIRRAKEFSVYKVV  186 (279)
T ss_pred             C----HHHHHHHHHHCCCCC-------CCCCCCCCEEECC--CHHHH---CCH-----------HHHHHHHHHHCCCCEE
T ss_conf             0----799999998738635-------5688763278801--06764---388-----------9999999984899618


Q ss_pred             EEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEE
Q ss_conf             98634689899999899731002434128888789999999999977988113089973898999999999972489737
Q gi|254780455|r  270 IVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQM  349 (418)
Q Consensus       270 i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~  349 (418)
                      ..=+||.  +.+.   .....+.+.|.+|--+|.. .+++++.+++.|+.|+ ..|-+|+|+|++.+.+.-+    ..+|
T Consensus       187 eVEv~~l--ee~~---~a~~~g~d~I~LDn~s~e~-~~~~v~~l~~~~~~~~-v~ieaSGGI~~~ni~~ya~----tGVD  255 (279)
T PRK08385        187 EVEVESL--EDAL---KAAKAGADIIMLDNMTPEE-IREVIEALKELGLREK-VKIEVSGGITPETIAEYAK----LDVD  255 (279)
T ss_pred             EEEECCH--HHHH---HHHHCCCCEEEECCCCHHH-HHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHHH----CCCC
T ss_conf             9970989--9999---9997699999984999999-9999999875076897-8999978998999999985----5989


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             8633464314656666665567773216898575
Q gi|254780455|r  350 IFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTK  383 (418)
Q Consensus       350 ~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve  383 (418)
                      .+.+|- |           -.+.+++++-.++++
T Consensus       256 ~IS~g~-l-----------t~s~~~~D~sl~iv~  277 (279)
T PRK08385        256 VISLGA-L-----------THSVRNFDVSLEIVK  277 (279)
T ss_pred             EEECCH-H-----------HCCCCCCCEEEEEEC
T ss_conf             998497-7-----------769962133799975


No 19 
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.34  E-value=0.0003  Score=48.65  Aligned_cols=267  Identities=15%  Similarity=0.087  Sum_probs=146.0

Q ss_pred             CCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf             71001244011789999999998489965999999658875544000023699999999716999899999983777555
Q gi|254780455|r    9 DPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK   88 (418)
Q Consensus         9 ~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~   88 (418)
                      +.+|...|.-|....-.. +.  .-++..++..+..|.+       .+++|+...-..++.+-.   ++.|         
T Consensus         4 ~~~i~~~L~ED~~~gDlT-s~--~~~~~~~~a~i~are~-------gv~~G~~~a~~i~~~~~~---~v~~---------   61 (272)
T PRK05848          4 KDFLEEALKEDLGRGDLF-ER--LEKDFKATAKIIAKSE-------GVFSGEKYALELLEMTGI---ECVW---------   61 (272)
T ss_pred             HHHHHHHHHHCCCCCCCC-CC--CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHHCC---EEEE---------
T ss_conf             999999997089999622-62--6899738999998799-------899879999999998598---8999---------


Q ss_pred             CCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             55789889999750899841687339926999854877867788899999988888775313486679999999999999
Q gi|254780455|r   89 KQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLW  168 (418)
Q Consensus        89 ~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (418)
                                      +-.+.-.+.+|+++++++||-......|..+||++..+...+|.+               .++.
T Consensus        62 ----------------~~~dG~~v~~g~~i~~i~G~~~~il~~ER~~LN~L~~~SGIAT~T---------------~~~v  110 (272)
T PRK05848         62 ----------------TIKDGESFKKGDTLMEIRGDFSMLLKVERTLLNLLQHSSGIATLT---------------SRFV  110 (272)
T ss_pred             ----------------EECCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
T ss_conf             ----------------908898906999999999778999999999999999999999999---------------9999


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHH
Q ss_conf             87776742699759984244347978899999999842121201247889999728987675204898764001220367
Q gi|254780455|r  169 SKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIE  248 (418)
Q Consensus       169 ~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~  248 (418)
                      .+      +++.++-=++||..++-.    -.-..+|...||.       .-+++|+...--.-...+.+.++..     
T Consensus       111 ~~------~~~~~~~i~~TRKT~Pg~----R~l~k~AV~~GGg-------~~HR~gLsd~ilikdNHi~~~g~~~-----  168 (272)
T PRK05848        111 EA------INSHKVKLLDTRKTRPLL----RIFEKYSVRNGGA-------SNHRLGLDDCLMLKDTHLKHIKDLK-----  168 (272)
T ss_pred             HH------HCCCCEEEECCCCCCCCH----HHHHHHHHHHCCC-------CCEECCCCCEEEECHHHHHHHCCHH-----
T ss_conf             97------189973997079777363----7999999996686-------5411468760788666887726899-----


Q ss_pred             HHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             8654999999999963988-659863468989999989973100243412888878999999999997798811308997
Q gi|254780455|r  249 TQNAPYQMMQQWNRLYDDN-LLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVF  327 (418)
Q Consensus       249 ~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~  327 (418)
                            .+.....+..|.. .-..-+|+.  +.+   ......+.+.|.+|--+|...- ++++..++ + .|. .+|-+
T Consensus       169 ------~ai~~~r~~~~~~~kIeVEv~~l--~ea---~~a~~~gaDiI~LDn~~~e~~k-~~v~~~~~-~-~~~-v~iea  233 (272)
T PRK05848        169 ------SFIQHARKNIPFTAKIEIECESL--EEA---KEAMNAGADIVMCDNMSVEETK-EIVAYRNA-N-YPH-VLLEA  233 (272)
T ss_pred             ------HHHHHHHHHCCCCCEEEEECCCH--HHH---HHHHHCCCCEEEECCCCHHHHH-HHHHHHHC-C-CCC-EEEEE
T ss_conf             ------99999998589984699974999--999---9998459998995899999999-99998746-4-887-79999


Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             389899999999997248973786334643146566666655677732168985
Q gi|254780455|r  328 SDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV  381 (418)
Q Consensus       328 Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl  381 (418)
                      |+|++++.+.+.-+    ..+|...+|. ||           .+.|++++-.++
T Consensus       234 SGGI~~~ni~~yA~----~GvD~Is~g~-lt-----------h~a~~~D~sl~i  271 (272)
T PRK05848        234 SGNISLETINAYAK----SGVDAISSGS-LI-----------HQATWIDMSMKM  271 (272)
T ss_pred             ECCCCHHHHHHHHH----CCCCEEECCH-HH-----------CCCCCCCEEEEC
T ss_conf             79998999999996----5999998797-76-----------799341348844


No 20 
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.88  E-value=0.003  Score=41.75  Aligned_cols=248  Identities=15%  Similarity=0.074  Sum_probs=132.7

Q ss_pred             CCCHHHHCCHHHH--HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf             1001244011789--99999999848996599999965887554400002369999999971699989999998377755
Q gi|254780455|r   10 PIISSLLDTDFYK--ILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYG   87 (418)
Q Consensus        10 piI~SlLdTD~Yk--ltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~   87 (418)
                      .+|..+|.-|.-.  +|. ++.  .-++..++..++.|.+       .+++|++..-+.++.+-  .-+++|        
T Consensus         2 ~~i~~~L~ED~~~gDlTt-~~l--~~~~~~~~a~i~are~-------gvl~G~~~~~~i~~~~~--~~~~~~--------   61 (269)
T cd01568           2 ALLDRALAEDLGYGDLTT-EAL--IPGDAPATATLIAKEE-------GVLAGLEVAEEVFELLD--GIEVEW--------   61 (269)
T ss_pred             HHHHHHHHCCCCCCCCCC-CCC--CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHCC--CEEEEE--------
T ss_conf             789999970899997784-210--7899759999997899-------89986999999999859--819999--------


Q ss_pred             CCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             55578988999975089984168733992699985487786778889999998888877531348667999999999999
Q gi|254780455|r   88 KKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKL  167 (418)
Q Consensus        88 ~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (418)
                                       +-.+.-.+.+|+++++++||.......|..+||++..+...+|.               ..++
T Consensus        62 -----------------~~~dG~~v~~g~~i~~i~G~a~~il~~ER~~LN~L~~lSGIAT~---------------T~~~  109 (269)
T cd01568          62 -----------------LVKDGDRVEAGQVLLEVEGPARSLLTAERVALNLLQRLSGIATA---------------TRRY  109 (269)
T ss_pred             -----------------ECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
T ss_conf             -----------------87888873799689999977899999999999999999899999---------------9999


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCC----CCCCCCCHHHHHHHHCCC
Q ss_conf             9877767426997599842443479788999999998421212012478899997289----876752048987640012
Q gi|254780455|r  168 WSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKI----NAIGTSAHELPMVAAAIT  243 (418)
Q Consensus       168 ~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi----~~~GTmaHs~v~a~~~~~  243 (418)
                      ..++      .+..+-=++||..++-.    -.-.-.|...||..   |    +++|+    -..-  -|  +-+.++. 
T Consensus       110 v~~~------~~~~~~i~~TRKT~Pgl----R~l~k~AV~~GGg~---~----HR~gLsd~iLikd--NH--i~~~g~~-  167 (269)
T cd01568         110 VEAA------RGTKARIADTRKTTPGL----RLLEKYAVRAGGGD---N----HRLGLSDAVLIKD--NH--IAAAGGI-  167 (269)
T ss_pred             HHHH------CCCCCEEEECCCCCCCC----HHHHHHHHHHCCCC---C----CCCCCCCEEEEEH--HH--HHHHCCH-
T ss_conf             9961------79982897468778673----69999999963722---3----4788874289805--06--8673899-


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             20367865499999999996398-86598634689899999899731002434128888789999999999977988113
Q gi|254780455|r  244 RTDIETQNAPYQMMQQWNRLYDD-NLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQN  322 (418)
Q Consensus       244 ~~~~~~~~~~~~a~~~~~~~yp~-~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~  322 (418)
                                ..|+...-+..|. ..-..-+||+.  .+   ......+.+.|.+|.-+|.... ++.++++.  . |+ 
T Consensus       168 ----------~~av~~~r~~~~~~~kIeVEv~tl~--ea---~~a~~~g~D~I~LDn~~~~~~~-~~v~~~~~--~-~~-  227 (269)
T cd01568         168 ----------TEAVKRARAAAPFEKKIEVEVETLE--EA---EEALEAGADIIMLDNMSPEELK-EAVKLLKG--L-PR-  227 (269)
T ss_pred             ----------HHHHHHHHHHCCCCCEEEEEECCHH--HH---HHHHHCCCCEEEECCCCHHHHH-HHHHHHCC--C-CC-
T ss_conf             ----------9999999986899843999949899--99---9999769999998798999999-99998477--9-98-


Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             089973898999999999972489737863346
Q gi|254780455|r  323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGT  355 (418)
Q Consensus       323 k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT  355 (418)
                      ..+-+|+|+|++.+.+.-+.  |  +|...+|.
T Consensus       228 v~ieaSGgI~~~ni~~ya~~--G--vD~Is~g~  256 (269)
T cd01568         228 VLLEASGGITLENIRAYAET--G--VDVISTGA  256 (269)
T ss_pred             EEEEEECCCCHHHHHHHHHC--C--CCEEEECH
T ss_conf             59999899999999999975--9--99999084


No 21 
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.59  E-value=0.0081  Score=38.82  Aligned_cols=246  Identities=11%  Similarity=0.033  Sum_probs=132.9

Q ss_pred             CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf             99659999996588755440000236999999997169998999999837775555578988999975089984168733
Q gi|254780455|r   34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK  113 (418)
Q Consensus        34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~  113 (418)
                      ++.++...++.|..       .+++|+..+-..++.+-   -+++|                         +-.+.-.+.
T Consensus        25 ~~~~~~a~i~are~-------gVl~G~~~~~~i~~~~~---~~v~~-------------------------~~~dG~~v~   69 (272)
T cd01573          25 GEQPGKITFRARDP-------GVLCGTEEAARILELLG---LEVDL-------------------------AAASGSRVA   69 (272)
T ss_pred             CCCEEEEEEEECCC-------EEEECHHHHHHHHHHHC---CEEEE-------------------------ECCCCCEEC
T ss_conf             99669999996799-------89977999999999849---89999-------------------------948798907


Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf             99269998548778677888999999888887753134866799999999999998777674269975998424434797
Q gi|254780455|r  114 KGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSL  193 (418)
Q Consensus       114 eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~  193 (418)
                      +|+.+++|+||.......|-.+||++..+...+|.+               .++..++..  ...+.++++  ||.-.+-
T Consensus        70 ~g~~i~~i~G~~~~iL~~ER~~LN~Lq~lSGIAT~T---------------~~~v~~~k~--~~~~~~ild--TRKT~Pg  130 (272)
T cd01573          70 AGAVLLEAEGPAAALHLGWKVAQTLLEWASGIATAT---------------AEMVAAARA--VNPDIVVAT--TRKAFPG  130 (272)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH--CCCCEEEEE--CCCCCCC
T ss_conf             998999999778999999999999999987289999---------------999999874--089819975--6776854


Q ss_pred             HHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             889999999984212120124788999972898767--520489876400122036786549999999999639886598
Q gi|254780455|r  194 TWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIG--TSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIV  271 (418)
Q Consensus       194 ~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~G--TmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~  271 (418)
                      .    -.-.-.|...||   -.|    +++|+--.-  .-.|  +.+.+...         ...+....-...|...-..
T Consensus       131 l----R~l~K~Av~~GG---g~n----HR~~L~d~ilIKdNH--i~~~g~~~---------~~~~v~~~k~~~~~~kIeV  188 (272)
T cd01573         131 T----RKLALKAILAGG---AVP----HRLGLSETILVFAEH--RAFLGGPE---------PLKALARLRATAPEKKIVV  188 (272)
T ss_pred             C----HHHHHHEEEECC---CCC----CCCCCCCCEEECHHH--HHHHCCCH---------HHHHHHHHHHHCCCCEEEE
T ss_conf             1----799986100488---405----666687744463889--98838832---------9999999986299970899


Q ss_pred             EECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             63468989999989973100243412888878999999999997798811308997389899999999997248973786
Q gi|254780455|r  272 LPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIF  351 (418)
Q Consensus       272 L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~f  351 (418)
                      -+||..  .+   ......+.+.|.+|--+| ...+++++++++..  | ...|-+|+|++++.+.+.-+.  |  +|..
T Consensus       189 Ev~~~~--q~---~~a~~~g~d~I~LDn~s~-~~ik~~v~~~~~~~--~-~v~ieaSGgI~~~ni~~yA~t--G--vD~I  255 (272)
T cd01573         189 EVDSLE--EA---LAAAEAGADILQLDKFSP-EELAELVPKLRSLA--P-PVLLAAAGGINIENAAAYAAA--G--ADIL  255 (272)
T ss_pred             EECCHH--HH---HHHHHCCCCEEEECCCCH-HHHHHHHHHHHCCC--C-CEEEEEECCCCHHHHHHHHHC--C--CCEE
T ss_conf             839999--99---999846999999779999-99999999974448--8-769999899999999999973--9--9999


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             334643146566666655677732168985
Q gi|254780455|r  352 GWGTNLTNDFDGCTPYQNLQTEKLQIVCKV  381 (418)
Q Consensus       352 GIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl  381 (418)
                       ++..+|.            .||+++-.|+
T Consensus       256 -s~~a~~~------------a~~~Disl~i  272 (272)
T cd01573         256 -VTSAPYY------------AKPADIKVKI  272 (272)
T ss_pred             -ECCHHHC------------CCHHHEEEEC
T ss_conf             -8084327------------7622316759


No 22 
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=95.28  E-value=0.26  Score=28.49  Aligned_cols=142  Identities=13%  Similarity=0.028  Sum_probs=87.5

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             97599842443479788999999998421212012478899997289876752048987640012203678654999999
Q gi|254780455|r  179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQ  258 (418)
Q Consensus       179 ~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~  258 (418)
                      +.++.=++||.-++-.-    .-...|...||..       -+++|+.-...+-+..+.+++++.           .+.+
T Consensus        14 ~~~~~i~~TRKT~Pg~R----~l~k~Av~~GGg~-------~HR~gL~d~ilikdnHi~~~g~~~-----------~~i~   71 (169)
T pfam01729        14 GTKVRIADTRKTTPGLR----LLEKYAVLIGGGD-------NHRLGLSDAVLIKDNHIAAAGSIT-----------EAVR   71 (169)
T ss_pred             CCCCEEEECCCCCCCCH----HHHHHHHHHCCCC-------CCCCCCCHHEEEHHHHHHHHCCHH-----------HHHH
T ss_conf             89988985678888836----9999999865831-------221688710365477887527999-----------9999


Q ss_pred             HHHHHCCCCCEE-EEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             999963988659-8634689899999899731002434128888789999999999977988113089973898999999
Q gi|254780455|r  259 QWNRLYDDNLLI-VLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSII  337 (418)
Q Consensus       259 ~~~~~yp~~~~i-~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~  337 (418)
                      .+-+..|...-| .-+||.  +.+.   .....+.+.|.+|--+| +..+++++.+++.+.  + ..|-+|+|++++.+.
T Consensus        72 ~~~~~~~~~~~I~VEv~tl--~e~~---~a~~~~~d~I~LDn~sp-e~l~~~v~~l~~~~~--~-v~iEaSGgI~~~ni~  142 (169)
T pfam01729        72 RAREVAPFAVKIEVEVENL--EELE---EALEAGADIIMLDNFSP-EEVREAVEELDERAG--R-VLLEVSGGITLDNVL  142 (169)
T ss_pred             HHHHHCCCCCEEEEEEEHH--HHHH---HHHHCCCCEEEECCCCH-HHHHHHHHHHHHHCC--C-EEEEECCCCCHHHHH
T ss_conf             9999679997099996019--9899---99846998999779999-999999999997589--6-799961899999999


Q ss_pred             HHHHHHCCCCEEEEEECC
Q ss_conf             999972489737863346
Q gi|254780455|r  338 YTYKHFENRVQMIFGWGT  355 (418)
Q Consensus       338 ~l~~~~~~~~~~~fGIGT  355 (418)
                      +.-+.    .+|...+|.
T Consensus       143 ~yA~t----GvD~IS~ga  156 (169)
T pfam01729       143 EYAKT----GVDVISVGA  156 (169)
T ss_pred             HHHHC----CCCEEECCH
T ss_conf             99976----999998586


No 23 
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.66  E-value=0.38  Score=27.36  Aligned_cols=246  Identities=17%  Similarity=0.105  Sum_probs=126.3

Q ss_pred             CCCHHHHCCHHHH--HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf             1001244011789--99999999848996599999965887554400002369999999971699989999998377755
Q gi|254780455|r   10 PIISSLLDTDFYK--ILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYG   87 (418)
Q Consensus        10 piI~SlLdTD~Yk--ltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~   87 (418)
                      .+|...|.-|.-.  +|.. +.  .-++.++...+..|.+       .+++|++..-+-++.+- ..-++.|        
T Consensus         2 ~~i~~al~ED~~~gDlTt~-~l--~~~~~~~~a~i~ake~-------gv~~G~~~~~~if~~~d-~~~~~~~--------   62 (268)
T cd01572           2 AIVRLALAEDLGRGDITSE-AI--IPPDARAEARLIAKEE-------GVLAGLPVAEEVFELLD-PGIEVEW--------   62 (268)
T ss_pred             HHHHHHHHCCCCCCCCCCH-HH--CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHHC-CCCEEEE--------
T ss_conf             7899999738999866743-02--7899759999997899-------89987899999999839-9869999--------


Q ss_pred             CCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             55578988999975089984168733992699985487786778889999998888877531348667999999999999
Q gi|254780455|r   88 KKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKL  167 (418)
Q Consensus        88 ~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (418)
                                       +-.+.-.+.+|+++++++||-......|-.+||++..+...+|               ...++
T Consensus        63 -----------------~~~dG~~v~~g~~i~~i~G~a~~il~~ER~~LN~l~~~SGIAT---------------~T~~~  110 (268)
T cd01572          63 -----------------LVKDGDRVEPGQVLATVEGPARSLLTAERTALNFLQRLSGIAT---------------LTRRY  110 (268)
T ss_pred             -----------------ECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_conf             -----------------8588988079989999997589999999999999999999999---------------99999


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE----HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             987776742699759984244347978899999999842121201----2478899997289876752048987640012
Q gi|254780455|r  168 WSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFL----GTSNALLAMNYKINAIGTSAHELPMVAAAIT  243 (418)
Q Consensus       168 ~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~----GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~  243 (418)
                      ..++.    ..+.++  .+||.-.+-. -....   .|...||..    |-|...+=+.         -|  +-+++++ 
T Consensus       111 v~~~~----~~~~~i--~~TRKT~Pg~-R~l~k---~AV~~GGg~~HR~gLsd~iLikd---------NH--i~~~g~i-  168 (268)
T cd01572         111 VEALA----GTKARI--LDTRKTTPGL-RLLEK---YAVRCGGGDNHRFGLSDAVLIKD---------NH--IAAAGSI-  168 (268)
T ss_pred             HHHHC----CCCCEE--EECCCCCCCH-HHHHH---HHHHHCCCCCCCCCCCCEEEEEH---------HH--HHHHCCH-
T ss_conf             99717----999579--7468888560-89999---99997060246788633488824---------27--8763789-


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             20367865499999999996398-86598634689899999899731002434128888789999999999977988113
Q gi|254780455|r  244 RTDIETQNAPYQMMQQWNRLYDD-NLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQN  322 (418)
Q Consensus       244 ~~~~~~~~~~~~a~~~~~~~yp~-~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~  322 (418)
                                ..+.+..-+..|. ..-..-+||.  +.+..   ....+.+.|.+|--.|.. .+++++.+++      .
T Consensus       169 ----------~~av~~~r~~~~~~~~IeVEv~s~--~e~~~---a~~~gadiI~LDn~spe~-~~~~v~~~~~------~  226 (268)
T cd01572         169 ----------TEAVRRARAAAPFTLKIEVEVETL--EQLKE---ALEAGADIIMLDNMSPEE-LREAVALLKG------R  226 (268)
T ss_pred             ----------HHHHHHHHHHCCCCCEEEEEECCH--HHHHH---HHHCCCCEEEECCCCHHH-HHHHHHHHCC------C
T ss_conf             ----------999999998679985299994889--99999---997599999977999999-9999998669------5


Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             08997389899999999997248973786334
Q gi|254780455|r  323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWG  354 (418)
Q Consensus       323 k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIG  354 (418)
                      ..+-+|+|+|++.+.+.-+.  |  +|...+|
T Consensus       227 v~ieaSGgIn~~ni~~ya~~--G--vD~Is~g  254 (268)
T cd01572         227 VLLEASGGITLENIRAYAET--G--VDYISVG  254 (268)
T ss_pred             EEEEEECCCCHHHHHHHHHC--C--CCEEECC
T ss_conf             69999899989999999975--9--9999838


No 24 
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.73  E-value=0.58  Score=26.11  Aligned_cols=258  Identities=10%  Similarity=0.018  Sum_probs=129.0

Q ss_pred             CCHHHHCCHHHH--HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf             001244011789--999999998489965999999658875544000023699999999716999899999983777555
Q gi|254780455|r   11 IISSLLDTDFYK--ILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGK   88 (418)
Q Consensus        11 iI~SlLdTD~Yk--ltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~   88 (418)
                      .|+..|.-|+..  +|-. .   -.++..+...++.|.+       .|++|+...-.-++.+                  
T Consensus        22 ~I~~aL~ED~g~gDiTs~-~---i~~~~~~~a~i~ake~-------gVlaG~~~~~~vf~~~------------------   72 (288)
T PRK06978         22 NVADAIAEDVGSGDQTGR-L---VPAGEPRRARVIVREE-------AVLCGVPWFDAVMRAV------------------   72 (288)
T ss_pred             HHHHHHHCCCCCCCCCCC-C---CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHH------------------
T ss_conf             999999708999964001-2---4899879999998799-------8997799999999985------------------


Q ss_pred             CCCCCHHHHHHHHHCCC---CCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             55789889999750899---841687339926999854877867788899999988888775313486679999999999
Q gi|254780455|r   89 KQLFEPKFLSWLSDFQL---PEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKK  165 (418)
Q Consensus        89 ~~~~~~~fl~~L~~~~f---~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~  165 (418)
                          ++       +.++   -.+.-.+.+|+.+++++||-.....-|-..||++..+...+|.               ..
T Consensus        73 ----d~-------~i~v~~~~~DG~~v~~G~~i~~i~G~a~~iL~~ERvaLN~Lq~lSGIAT~---------------T~  126 (288)
T PRK06978         73 ----DP-------SIEVQWRYREGDRMTADSTVCELEGPARALLTAERNALNFLQLLSGVATA---------------TR  126 (288)
T ss_pred             ----CC-------CEEEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
T ss_conf             ----99-------72999983889891799999999988799999999999999999899999---------------99


Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE----HHHHHHHHHHCCCCCCCCCCHHHHHHHHC
Q ss_conf             99987776742699759984244347978899999999842121201----24788999972898767520489876400
Q gi|254780455|r  166 KLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFL----GTSNALLAMNYKINAIGTSAHELPMVAAA  241 (418)
Q Consensus       166 ~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~----GTSNv~aa~~~gi~~~GTmaHs~v~a~~~  241 (418)
                      +...++    ...+.++  ..||--.+-.  .  .-.-.|...||..    |-|...+=+.         -|  +.+.+.
T Consensus       127 ~~v~~i----~~~~~~i--~dTRKT~PGl--R--~leKyAV~~GGG~nHR~gL~D~iLIKd---------NH--i~~~g~  185 (288)
T PRK06978        127 RYVDRI----AGTRARI--LDTRKTLPGL--R--LAQKYAVRVGGGENQRLALYDGILIKE---------NH--IAAAGG  185 (288)
T ss_pred             HHHHHH----CCCCCEE--EECCCCCCCC--H--HHHHHHHHHCCEECCCCCCHHHHEEEH---------HH--HHHCCC
T ss_conf             999985----1569679--8627778880--6--999999996591034688412410303---------26--876388


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             12203678654999999999963988659863468989999989973100243412888878999999999997798811
Q gi|254780455|r  242 ITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQ  321 (418)
Q Consensus       242 ~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~  321 (418)
                      +.           .|...-.+..+...-..=+||.+  .   .......+.+.|.+|--+|...- ++.+...     ++
T Consensus       186 i~-----------~av~~~~~~~~~~~IeVEve~l~--q---~~~al~~g~d~ImLDNms~~~~~-~av~~~~-----~~  243 (288)
T PRK06978        186 VG-----------EALDAAFALNAGVPVQIEVETLA--Q---LETALAHGAQSVLLDNFTLDMMR-EAVRVTA-----GR  243 (288)
T ss_pred             HH-----------HHHHHHHHHCCCCCEEEEECCHH--H---HHHHHHCCCCEEEECCCCHHHHH-HHHHHHC-----CC
T ss_conf             99-----------99999998189986599964477--7---89998489999995799999999-9999647-----96


Q ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             30899738989999999999724897378633464314656666665567773216898575
Q gi|254780455|r  322 NKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTK  383 (418)
Q Consensus       322 ~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve  383 (418)
                       ..+-+|+|++.+.+.+.-+.  |  .|.--+|- ||           .+.+++++-++++|
T Consensus       244 -~~lEaSGgI~~~ni~~yA~t--G--VD~IS~Ga-LT-----------hsa~~lD~Sl~ive  288 (288)
T PRK06978        244 -AVLEVSGGVNFDTVRAFAET--G--VDRISIGA-LT-----------KDVRATDYSMRIVE  288 (288)
T ss_pred             -EEEEEECCCCHHHHHHHHHC--C--CCEEECCH-HH-----------CCCCCCCCEEEEEC
T ss_conf             -79999899999999999966--9--99998885-43-----------69986253268519


No 25 
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.39  E-value=0.9  Score=24.80  Aligned_cols=204  Identities=13%  Similarity=0.059  Sum_probs=105.9

Q ss_pred             CEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             16873399269998548778677888999999888887753134866799999999999998777674269975998424
Q gi|254780455|r  108 YDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGT  187 (418)
Q Consensus       108 ~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~  187 (418)
                      +.-.+.+|+.+++++||-......|-.+||++..+...+|.               ..++.+++.    ..+.+++  +|
T Consensus        77 dG~~v~~g~~i~~i~G~a~~il~~ER~~LN~l~~lSGIAT~---------------T~~~v~~~~----~~~~~i~--~T  135 (285)
T PRK07428         77 EGEACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATL---------------TRQYVEKIA----DLPTQLV--DT  135 (285)
T ss_pred             CCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHC----CCCCEEE--EC
T ss_conf             89853489789999987899999999999999999999999---------------999999616----7898898--34


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCC----CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             434797889999999984212120124788999972898----7675204898764001220367865499999999996
Q gi|254780455|r  188 RRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKIN----AIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRL  263 (418)
Q Consensus       188 RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~----~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~  263 (418)
                      |--.+-. -.   -...|...||-   -|    +++|+.    ..--  |  +-..+++.           .|+....+.
T Consensus       136 RKT~PGl-R~---l~k~AV~~GGg---~~----HR~gLsd~iLIkdN--H--i~~~g~i~-----------~ai~~~r~~  189 (285)
T PRK07428        136 RKTTPGL-RL---LEKYATRVGGA---IN----HRMGLDDAVMIKDN--H--IQAAGGIG-----------EAITRIRQQ  189 (285)
T ss_pred             CCCCCCC-HH---HHHHHHHHCCC---CC----CCCCCCCCEEEEHH--H--HHHCCCHH-----------HHHHHHHHH
T ss_conf             7778773-49---99999996671---56----47999750567774--7--52028999-----------999999974


Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             39886598634689899999899731002434128888789999999999977988113089973898999999999972
Q gi|254780455|r  264 YDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       264 yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      .|...-| -+.+=+.+.+   ......+.+.|-+|--+|.. .+++++.+++.+  |+ ..+-+|+|+|++.+.+.-+. 
T Consensus       190 ~~~~~~I-eVEv~~l~q~---~~a~~~g~DiI~LDnm~~~~-~~~~v~~l~~~~--~~-v~iEaSGgIn~~ni~~yA~t-  260 (285)
T PRK07428        190 IPYPLTI-EVETETLEQV---QEALEYGADIIMLDNMPVDQ-MQQAVQLIRQQN--PR-VKIEASGNITLETIRAVAET-  260 (285)
T ss_pred             CCCCCEE-EEEECCHHHH---HHHHHCCCCEEEECCCCHHH-HHHHHHHHHHHC--CC-EEEEEECCCCHHHHHHHHHC-
T ss_conf             8998269-9996989999---99996699999987999999-999999987308--98-89999899999999999974-


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             489737863346431465666666556777321689857
Q gi|254780455|r  344 ENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVT  382 (418)
Q Consensus       344 ~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlv  382 (418)
                       |  +|..-+|- +|           .+.|++++-.++.
T Consensus       261 -G--VD~Is~ga-lt-----------~~~~~~Disl~i~  284 (285)
T PRK07428        261 -G--VDYISTSA-PI-----------TRSPWLDLSMRIT  284 (285)
T ss_pred             -C--CCEEECCH-HH-----------CCCCCCCEEEEEE
T ss_conf             -9--99998383-10-----------6997521388987


No 26 
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.10  E-value=1.5  Score=23.29  Aligned_cols=262  Identities=12%  Similarity=0.051  Sum_probs=135.3

Q ss_pred             CCCCHHHHCCHHHH--HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf             71001244011789--9999999984899659999996588755440000236999999997169998999999837775
Q gi|254780455|r    9 DPIISSLLDTDFYK--ILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFY   86 (418)
Q Consensus         9 ~piI~SlLdTD~Yk--ltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~   86 (418)
                      +..|+..|.-|.-.  +|-. .   ..++..++..++.|.+       ++++|+...-+.++.+-- +-+++|       
T Consensus        10 ~~~i~~aL~ED~~~gDlTt~-~---l~~~~~~~a~iiare~-------gvl~G~~~~~~if~~l~~-~~~~~~-------   70 (277)
T PRK05742         10 EANVRRALAEDIGSGDITAQ-L---IPAERLAKATIITREA-------AVIAGTAWVDAVFRQLDP-RVAVHW-------   70 (277)
T ss_pred             HHHHHHHHHHCCCCCCCCHH-H---CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHHCC-CCEEEE-------
T ss_conf             99999999708999975100-0---4899779999998899-------799879999999999699-709999-------


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             55557898899997508998416873399269998548778677888999999888887753134866799999999999
Q gi|254780455|r   87 GKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKK  166 (418)
Q Consensus        87 ~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~  166 (418)
                                        .-.+.-.+.+|+++++++||.......|-.+||++..+...+|..               .+
T Consensus        71 ------------------~~~dG~~v~~g~~i~~i~G~a~~il~~ERvaLN~L~~lSGIAT~T---------------~~  117 (277)
T PRK05742         71 ------------------QVADGDRVEANQVLFHLEGPARSLLTGERSALNFLQLLSGVATRA---------------RH  117 (277)
T ss_pred             ------------------EECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
T ss_conf             ------------------838898705886899999778999999999999999999999999---------------99


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCC
Q ss_conf             9987776742699759984244347978899999999842121201247889999728987--67520489876400122
Q gi|254780455|r  167 LWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINA--IGTSAHELPMVAAAITR  244 (418)
Q Consensus       167 ~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~--~GTmaHs~v~a~~~~~~  244 (418)
                      +..++.    ..+.++  .+||--.+-.  .  .-...|...||..   |    +++|+.-  .-==.|  +.+.+..  
T Consensus       118 ~v~~~~----~~~~~i--~~TRKT~PGl--R--~lek~AV~~GGg~---~----HR~gLsd~iLiKdNH--i~~~g~i--  176 (277)
T PRK05742        118 YADLVA----GTQVKL--LDTRKTLPGL--R--LAQKYAVTCGGCH---N----HRIGLYDAFLIKENH--IAACGGI--  176 (277)
T ss_pred             HHHHHC----CCCEEE--EECCCCCCCH--H--HHHHHHHHHCCCC---C----CCCCCCCEEEEECCH--HHHCCCH--
T ss_conf             999834----887199--8137878527--9--9999999866840---5----458876358974546--5550679--


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-HHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             0367865499999999996398865986346898999998997-310024341288887899999999999779881130
Q gi|254780455|r  245 TDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPS-WMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNK  323 (418)
Q Consensus       245 ~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~-~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k  323 (418)
                               ..+....-+..|...-..-+||.      +.+.+ ...+.+.|.+|--.|..+-+ +++..   +  ++ .
T Consensus       177 ---------~~~v~~~~~~~~~~kIeVEv~tl------~q~~~a~~~gaDiI~LDnms~~~lk~-av~~~---~--~~-~  234 (277)
T PRK05742        177 ---------AQAVAAAHRIAPGKPVEVEVESL------DELRQALAAGADIVMLDELSLDDMRE-AVRLT---A--GR-A  234 (277)
T ss_pred             ---------HHHHHHHHHHCCCCCEEEEECCH------HHHHHHHHCCCCEEEECCCCHHHHHH-HHHHH---C--CC-E
T ss_conf             ---------99999999848997269996779------99999874699899986999999999-99974---7--97-4


Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             8997389899999999997248973786334643146566666655677732168985
Q gi|254780455|r  324 FLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV  381 (418)
Q Consensus       324 ~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl  381 (418)
                      .+-+|+|+|.+.+.+.-+.  |  +|...+| .||           .+.+++++-+++
T Consensus       235 ~iEaSGGI~~~ni~~yA~t--G--vD~IS~g-alt-----------~~a~~lD~sl~~  276 (277)
T PRK05742        235 KLEASGGINETTLRVIAET--G--VDYISIG-AMT-----------KDVKAVDLSMRL  276 (277)
T ss_pred             EEEEECCCCHHHHHHHHHC--C--CCEEECC-HHH-----------CCCCCEEEEEEC
T ss_conf             8999889999999999974--9--9999888-010-----------699650157851


No 27 
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393   Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , .   Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=80.67  E-value=4.3  Score=20.15  Aligned_cols=232  Identities=18%  Similarity=0.135  Sum_probs=125.5

Q ss_pred             CCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH---HCCC---CCC
Q ss_conf             9659999996588755440000236999999997169998999999837775555578988999975---0899---841
Q gi|254780455|r   35 DIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLS---DFQL---PEY  108 (418)
Q Consensus        35 ~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~---~~~f---~~~  108 (418)
                      ..++.-.+.+|.+       .|.+|++-.-..+                              ++|.   ++++   -.+
T Consensus        26 ~~~a~a~~~aKe~-------GV~AG~~~a~~~F------------------------------~~l~~~v~~~~~~~~~D   68 (276)
T TIGR00078        26 STRAKASLVAKEN-------GVLAGLEVAERVF------------------------------ELLDDEVGVQVEWLVKD   68 (276)
T ss_pred             CCCEEEEEEECCC-------CEEECHHHHHHHH------------------------------HHHCCCCCEEEEEECCC
T ss_conf             8845899998578-------6043727999999------------------------------97488631798410378


Q ss_pred             EEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             68733992699985487786778889999998888877531348667999999999999987776742699759984244
Q gi|254780455|r  109 DLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTR  188 (418)
Q Consensus       109 ~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~R  188 (418)
                      .-.+.+|+.+++|+||....-+-|=-.||+|..++.++|               ..+++.++++.    .+..+-=+|||
T Consensus        69 G~~~~~G~~v~~~~G~a~~lL~~ERtaLN~l~~lSGIAT---------------~Tr~~v~~~~~----~~~~~~i~dTR  129 (276)
T TIGR00078        69 GDEVEAGEVVAEVEGPARSLLTAERTALNFLQRLSGIAT---------------ATRKYVEALRG----TNPKVRIADTR  129 (276)
T ss_pred             CCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHC----CCCCEEEEEEE
T ss_conf             877447738999974610146888999999985218999---------------99999999845----89933899852


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHH------------HHHHHCCCCCHHHHHHHHHHH
Q ss_conf             34797889999999984212120124788999972898767520489------------876400122036786549999
Q gi|254780455|r  189 RRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHEL------------PMVAAAITRTDIETQNAPYQM  256 (418)
Q Consensus       189 R~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~------------v~a~~~~~~~~~~~~~~~~~a  256 (418)
                      --.+                 ||      -.--||-+..-|=+.|=|            |...|++.           +|
T Consensus       130 KTTP-----------------GL------R~~EKyAVr~GGG~nHR~~LsDavmiKDNHi~~~Gs~~-----------~A  175 (276)
T TIGR00078       130 KTTP-----------------GL------RLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIE-----------KA  175 (276)
T ss_pred             CCCC-----------------CC------CCEEEEEEEECCCCCCCCCCCCEEEEEECEEECCCCHH-----------HH
T ss_conf             5787-----------------43------01023135535885786888773897502066068989-----------99


Q ss_pred             HHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
Q ss_conf             99999963988659863468989999989-97310024341288887899999999999779881130899738989999
Q gi|254780455|r  257 MQQWNRLYDDNLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDS  335 (418)
Q Consensus       257 ~~~~~~~yp~~~~i~L~DTy~~~~~l~~~-~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~  335 (418)
                      .+.--+..|.-.-| =|=+=+    +..+ +...++-+-|=||--+|.+ .+++.+.++..+  | +..+=+|+|++.+.
T Consensus       176 v~~aR~~~~~~~ki-EVEVen----lE~a~eA~~AGADiImLDNm~p~~-~~~av~~~~~~~--p-~~~~EaSGGitl~n  246 (276)
T TIGR00078       176 VKRARAALPFAKKI-EVEVEN----LEEAEEAAEAGADIIMLDNMKPEE-IKEAVELLKGRN--P-NVLVEASGGITLDN  246 (276)
T ss_pred             HHHHHHHCCCCCEE-EEEECC----HHHHHHHHHCCCCEEECCCCCHHH-HHHHHHHHHHCC--C-EEEEEEECCCCHHH
T ss_conf             99999848998079-986289----899999997099599806989479-999999997029--9-08999836998789


Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             9999997248973786334643146566666655677732168985
Q gi|254780455|r  336 IIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV  381 (418)
Q Consensus       336 i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl  381 (418)
                      +....+    -.+|.-=+| .|           -.+.|.|++-.|+
T Consensus       247 ~~~ya~----~gVD~IS~G-~l-----------Ths~~~LD~SL~~  276 (276)
T TIGR00078       247 IEEYAE----TGVDVISSG-AL-----------THSVPALDLSLKI  276 (276)
T ss_pred             HHHHHH----CCCCEEECC-CH-----------HHEEEEEEEEECC
T ss_conf             999840----897588327-41-----------1200678876339


No 28 
>KOG0425 consensus
Probab=77.80  E-value=1.4  Score=23.58  Aligned_cols=54  Identities=22%  Similarity=0.172  Sum_probs=37.5

Q ss_pred             CCCCCCEE---EECCCCEEEEEEC--------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             89984168---7339926999854--------------877867788899999988888775313486679
Q gi|254780455|r  103 FQLPEYDL---SHKKGQYVLNFHG--------------LWKDVTLWEIPSLIIISTLYSRITVRSMNPFSV  156 (418)
Q Consensus       103 ~~f~~~~~---~~~eg~~~i~ieG--------------p~~~~~l~EtplL~iine~~~~~~~~~~~~~~~  156 (418)
                      +||..++|   ..++|.+.|.|=-              .|.-++-+||-||+||+-+..+.+....+..+.
T Consensus        72 ~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa  142 (171)
T KOG0425          72 FRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAA  142 (171)
T ss_pred             EEEEHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             56133213777278898889961589888666777343057764446768889988718998886244799


No 29 
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase; InterPro: IPR012768    Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (3.2.1.141 from EC). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0005992 trehalose biosynthetic process.
Probab=77.56  E-value=4.4  Score=20.08  Aligned_cols=54  Identities=20%  Similarity=0.372  Sum_probs=38.7

Q ss_pred             HHHHHHHHHCC--CCEEECCC----CC------HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             99989973100--24341288----88------789999999999977988113089973898999999
Q gi|254780455|r  281 FLEHAPSWMTQ--WKGFRHDS----AS------PIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSII  337 (418)
Q Consensus       281 ~l~~~~~~~~~--~~GVR~DS----GD------~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~  337 (418)
                      ||.|+.-++..  ++|.|||=    .|      |.+++.++++...+.|.   .+.+|+-|+||--+++
T Consensus       236 ~i~NAlyWL~ey~~DGLRLDAvhai~D~~a~H~L~ela~~v~~~~~~~gR---~~~LiaEsdlN~p~l~  301 (564)
T TIGR02402       236 IIDNALYWLREYHFDGLRLDAVHAIADTSAVHILEELAEAVRELAAELGR---PVHLIAESDLNDPSLL  301 (564)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC---EEEEEEECCCCCCCCC
T ss_conf             99989999976387864456886405888864789999999999605898---0899966344785304


No 30 
>pfam02749 QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The N-terminal domain has an alpha/beta hammerhead fold.
Probab=76.79  E-value=4.4  Score=20.09  Aligned_cols=73  Identities=16%  Similarity=0.230  Sum_probs=49.3

Q ss_pred             CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf             99659999996588755440000236999999997169998999999837775555578988999975089984168733
Q gi|254780455|r   34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK  113 (418)
Q Consensus        34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~  113 (418)
                      ++.+++..+..|.+       .+++|+...-..++.+.+   ++++                         +-.+.-.+.
T Consensus        14 ~~~~~~a~i~are~-------gv~aG~~~~~~i~~~~~~---~v~~-------------------------~~~dG~~v~   58 (88)
T pfam02749        14 PDKRAKAVIIAKEE-------GVVAGLEEAAEVFELLGL---EVEW-------------------------LVKDGERVE   58 (88)
T ss_pred             CCCEEEEEEEECCC-------EEEECHHHHHHHHHHHCC---EEEE-------------------------ECCCCCEEC
T ss_conf             99749999997898-------699809999999998094---9999-------------------------968899917


Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             9926999854877867788899999988
Q gi|254780455|r  114 KGQYVLNFHGLWKDVTLWEIPSLIIIST  141 (418)
Q Consensus       114 eg~~~i~ieGp~~~~~l~EtplL~iine  141 (418)
                      +|+++++++||.......|-.+||++..
T Consensus        59 ~g~~i~~i~G~~~~il~~ER~~LN~l~~   86 (88)
T pfam02749        59 AGDVILEIEGPARALLTAERVALNFLQR   86 (88)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf             9999999998889999999999999986


No 31 
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=72.44  E-value=6.3  Score=19.02  Aligned_cols=41  Identities=15%  Similarity=0.151  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             999999999977988113089973898999999999972489
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENR  346 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~  346 (418)
                      -++|+++||++.||+... .-+..++++.+.+..+.....+.
T Consensus        12 TcrKA~kWL~~~~I~y~~-~di~k~p~s~~el~~~L~~~~~g   52 (132)
T PRK13344         12 SCKKAKTWLNAHQLAYKE-QNLGKEPLTKEEILAILSKTENG   52 (132)
T ss_pred             HHHHHHHHHHHCCCCEEE-EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             789999999987996388-54122796999999999981558


No 32 
>PRK03103 DNA polymerase IV; Reviewed
Probab=72.24  E-value=7.1  Score=18.63  Aligned_cols=30  Identities=7%  Similarity=0.022  Sum_probs=15.5

Q ss_pred             HHHHHHHHHCCCCCCEEEECCCCEEEEEECCH
Q ss_conf             88999975089984168733992699985487
Q gi|254780455|r   94 PKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLW  125 (418)
Q Consensus        94 ~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~  125 (418)
                      ....+.|+.  |++.+-...=.|-.+.++|..
T Consensus        87 ~~v~~il~~--~~p~ve~~SIDE~fldlt~~~  116 (410)
T PRK03103         87 VQITEILER--YTDLVEPYSIDEQFMDVTGSQ  116 (410)
T ss_pred             HHHHHHHHH--CCCCEEECCCCCEEEECCCHH
T ss_conf             999999985--795311245870378756603


No 33 
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930    In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys.    Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis.  ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate  Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=70.15  E-value=2.2  Score=22.19  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=15.7

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEE-EECCCC-CCCCCC
Q ss_conf             389899999999997248973786-334643-146566
Q gi|254780455|r  328 SDNLDVDSIIYTYKHFENRVQMIF-GWGTNL-TNDFDG  363 (418)
Q Consensus       328 Sd~Ld~e~i~~l~~~~~~~~~~~f-GIGT~L-t~d~~~  363 (418)
                      -+=|-+..+..|....+.    .. +|-=|+ |+|.-|
T Consensus       732 AGlLKP~AAk~L~~ALre----~~PD~PiH~HTHDtSG  765 (1169)
T TIGR01235       732 AGLLKPAAAKLLIKALRE----KIPDLPIHLHTHDTSG  765 (1169)
T ss_pred             HCCCHHHHHHHHHHHHHH----CCCCCCEEEECCCCHH
T ss_conf             124428999999999973----2799856862666126


No 34 
>PRK12559 transcriptional regulator Spx; Provisional
Probab=69.38  E-value=5.2  Score=19.59  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             9999999999779881130899738989999999999724
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE  344 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~  344 (418)
                      -++|+++||++.|++... .-+.++.++.+.+..+.+...
T Consensus        12 tcRKA~~wL~~~~I~y~~-~d~~~~~~t~~el~~ll~~~~   50 (131)
T PRK12559         12 SCRKAKAWLEENQIDYTE-KNIVSNSMTVDELKSILRLTE   50 (131)
T ss_pred             HHHHHHHHHHHCCCCCEE-ECCCCCCCCHHHHHHHHHHHC
T ss_conf             799999999987998187-210028989999999999836


No 35 
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.60  E-value=8.9  Score=17.97  Aligned_cols=235  Identities=16%  Similarity=0.079  Sum_probs=117.5

Q ss_pred             CCCHHHHCCHHH---HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf             100124401178---99999999984899659999996588755440000236999999997169998999999837775
Q gi|254780455|r   10 PIISSLLDTDFY---KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFY   86 (418)
Q Consensus        10 piI~SlLdTD~Y---kltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~   86 (418)
                      ++|+.-|.-|+.   -+|.. +..  -++..++..+..|..       .+++|+...-.-++.+                
T Consensus        11 ~~i~~aL~ED~g~~gDlTt~-~l~--~~~~~~~a~i~ake~-------gv~~G~~~~~~vf~~~----------------   64 (281)
T PRK06106         11 PLVRAALLEDLGRAGDITTD-AIV--PADHRATVVLVARQP-------GVIAGLDLARLAFRLV----------------   64 (281)
T ss_pred             HHHHHHHHHHCCCCCCCCCH-HHC--CCCCEEEEEEEECCC-------EEEEEHHHHHHHHHHH----------------
T ss_conf             99999998258899873713-008--899759999997899-------7998189999999970----------------


Q ss_pred             CCCCCCCHHHHHHHHHCC---CCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             555578988999975089---98416873399269998548778677888999999888887753134866799999999
Q gi|254780455|r   87 GKKQLFEPKFLSWLSDFQ---LPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQA  163 (418)
Q Consensus        87 ~~~~~~~~~fl~~L~~~~---f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~  163 (418)
                            ++       +..   +-.+.-.+.+|+.+++++||-.....-|-..||++..+...+|               .
T Consensus        65 ------d~-------~i~~~~~~~DG~~v~~g~~i~~i~G~a~~iL~~ER~aLN~lq~lSGIAT---------------~  116 (281)
T PRK06106         65 ------DP-------EIEMRRHLPDGAAVAPGDVIATISGPARGLLTAERTALNFLCHLSGIAT---------------A  116 (281)
T ss_pred             ------CC-------CEEEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------H
T ss_conf             ------89-------6599998588988138986899994779999989999999999999999---------------9


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCC----CCCCCCHHHHHHH
Q ss_conf             999998777674269975998424434797889999999984212120124788999972898----7675204898764
Q gi|254780455|r  164 KKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKIN----AIGTSAHELPMVA  239 (418)
Q Consensus       164 ~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~----~~GTmaHs~v~a~  239 (418)
                      ..+..+++.    ..+.+++  .||--.+-. -...-   .|...||..   |    +++|+-    ..-  -|  +-+.
T Consensus       117 T~~~v~~~~----~~~~~i~--dTRKT~PGl-R~leK---yAV~~GGg~---n----HR~gL~d~iLIKd--NH--i~~~  175 (281)
T PRK06106        117 TASIVAAIA----GTKAKIV--CTRKTTPGL-RALEK---YAVRAGGGS---N----HRFGLDDAVLIKD--NH--IAIA  175 (281)
T ss_pred             HHHHHHHHC----CCCCEEE--ECCCCCCCC-HHHHH---HHHHHCCEE---E----CCCCCCCCEEEEH--HH--HHHH
T ss_conf             999999843----4699898--778788753-59999---999967985---1----0588875377778--79--8743


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             0012203678654999999999963988659-863468989999989973100243412888878999999999997798
Q gi|254780455|r  240 AAITRTDIETQNAPYQMMQQWNRLYDDNLLI-VLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNC  318 (418)
Q Consensus       240 ~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i-~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gi  318 (418)
                      ++.           ..|....-+..|...-| .=+||.  +.+   ......+.+.|-+|--+|.... ++++..+.   
T Consensus       176 g~i-----------~~av~~~r~~~~~~~kIeVEv~sl--~q~---~~al~~g~d~ImLDNmsp~~~~-~av~~~~~---  235 (281)
T PRK06106        176 GGV-----------REAIRRARAGVGHLVKIEVEVDTL--EQL---EEALELGVDAVLLDNMSPDTLR-EAVAIVAG---  235 (281)
T ss_pred             CCH-----------HHHHHHHHHHCCCCCEEEEEECCH--HHH---HHHHHCCCCEEEECCCCHHHHH-HHHHHHCC---
T ss_conf             889-----------999999997579972499996999--999---9997279989998799999999-99998568---


Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             811308997389899999999997
Q gi|254780455|r  319 NPQNKFLVFSDNLDVDSIIYTYKH  342 (418)
Q Consensus       319 dp~~k~iv~Sd~Ld~e~i~~l~~~  342 (418)
                        + ..+-+|+|++++.+.+.-+.
T Consensus       236 --~-~~~EaSGgI~~~ni~~yA~t  256 (281)
T PRK06106        236 --R-AITEASGRITPETAPAIAAS  256 (281)
T ss_pred             --C-EEEEEECCCCHHHHHHHHHC
T ss_conf             --4-68999789999999999973


No 36 
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.39  E-value=9  Score=17.94  Aligned_cols=243  Identities=16%  Similarity=0.074  Sum_probs=122.0

Q ss_pred             CCCCHHHHCCHH-H--HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf             710012440117-8--9999999998489965999999658875544000023699999999716999899999983777
Q gi|254780455|r    9 DPIISSLLDTDF-Y--KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF   85 (418)
Q Consensus         9 ~piI~SlLdTD~-Y--kltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~   85 (418)
                      +++|+..|.-|. |  -+|.. +..  -++..+...+..|.+       .+++|++..-.-++.+             ..
T Consensus        15 ~~~I~~aL~ED~~~g~DlTt~-~li--~~~~~~~a~i~ake~-------gvl~G~~~a~~vf~~l-------------~~   71 (288)
T PRK07896         15 RAVIARALDEDLRYGPDVTTV-ATV--PADAVATASMVTREA-------GVVAGLDVALLVLDEV-------------LG   71 (288)
T ss_pred             HHHHHHHHHHCCCCCCCCCCH-HHC--CCCCEEEEEEEECCC-------EEEECHHHHHHHHHHH-------------CC
T ss_conf             999999998209999883657-348--888759999996899-------7997289999999984-------------78


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             55555789889999750899841687339926999854877867788899999988888775313486679999999999
Q gi|254780455|r   86 YGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKK  165 (418)
Q Consensus        86 ~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~  165 (418)
                             ++.    ++-..+-.+.-.+.+|+.+++++||-.....-|=..||++..+...+|               ...
T Consensus        72 -------~~~----~~v~~~~~DG~~v~~G~~i~~i~G~a~~iL~~ERvaLN~Lq~lSGIAT---------------~T~  125 (288)
T PRK07896         72 -------TDG----YRVLDRVEDGARVPPGQALLTVTAPTRGLLTAERTMLNLLCHLSGIAT---------------ATA  125 (288)
T ss_pred             -------CCC----EEEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
T ss_conf             -------998----499998688989079989999996789999999999999999989999---------------999


Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEHHHHHHHHHHCCC----CCCCCCCHHHHHHHH
Q ss_conf             999877767426997599842443479788999999998421-212012478899997289----876752048987640
Q gi|254780455|r  166 KLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGI-KDSFLGTSNALLAMNYKI----NAIGTSAHELPMVAA  240 (418)
Q Consensus       166 ~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~-~~gf~GTSNv~aa~~~gi----~~~GTmaHs~v~a~~  240 (418)
                      ++..++.    ..+.++.  .||--.+-.  .   .-.++|. .||   -.|    +++|+    -+.-  -|  +.+.+
T Consensus       126 ~~v~~~~----~~~~~i~--dTRKT~PGl--R---~leKyAV~~GG---G~n----HR~gL~D~iLIKd--NH--i~~~g  183 (288)
T PRK07896        126 AWVDAVA----GTGAKIR--DTRKTLPGL--R---ALQKYAVRCGG---GVN----HRMGLGDAALIKD--NH--VAAAG  183 (288)
T ss_pred             HHHHHHC----CCCCEEE--CCCCCCCCH--H---HHHHHHHHHCC---CCC----CCCCCCCEEEEEH--HH--HHHCC
T ss_conf             9999835----8897795--067789865--7---99999999779---355----5688754289862--14--65308


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             01220367865499999999996398865986346898999998997310024341288887899999999999779881
Q gi|254780455|r  241 AITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNP  320 (418)
Q Consensus       241 ~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp  320 (418)
                      ++           ..|++..-+..|...-..=+||.  +.+   ......+.+.|=+|--.|... +++.+..+...  |
T Consensus       184 ~i-----------~~ai~~~r~~~~~~kIeVEv~sl--~q~---~ea~~~gaDiImLDNms~e~~-~~av~~~~~~~--~  244 (288)
T PRK07896        184 SV-----------VAALRAVRAAAPDLPCEVEVDSL--EQL---DEVLAEGAELILLDNFPVWQT-QEAVQRRDARA--P  244 (288)
T ss_pred             CH-----------HHHHHHHHHHCCCCEEEEEECCH--HHH---HHHHHCCCCEEEECCCCHHHH-HHHHHHHHCCC--C
T ss_conf             69-----------99999999858996199997979--999---998746999999779999999-99999983769--8


Q ss_pred             CCEEEEECCCCCHHHHHHHHHH
Q ss_conf             1308997389899999999997
Q gi|254780455|r  321 QNKFLVFSDNLDVDSIIYTYKH  342 (418)
Q Consensus       321 ~~k~iv~Sd~Ld~e~i~~l~~~  342 (418)
                       ...+-+|+|+|.+.+.+.-+.
T Consensus       245 -~v~lEaSGgI~~~ni~~yA~t  265 (288)
T PRK07896        245 -TVLLESSGGLTLDTAAAYAAT  265 (288)
T ss_pred             -CEEEEEECCCCHHHHHHHHHC
T ss_conf             -748999889999999999965


No 37 
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed
Probab=66.77  E-value=9.2  Score=17.86  Aligned_cols=13  Identities=15%  Similarity=-0.071  Sum_probs=7.1

Q ss_pred             HHCCCCCCCCCCH
Q ss_conf             9728987675204
Q gi|254780455|r  221 MNYKINAIGTSAH  233 (418)
Q Consensus       221 ~~~gi~~~GTmaH  233 (418)
                      ..+||.-+|..+|
T Consensus       196 ~~~GI~Ti~dLa~  208 (422)
T PRK03609        196 NAMGIKTALDLAD  208 (422)
T ss_pred             HHCCCCHHHHHHH
T ss_conf             9878810899872


No 38 
>TIGR01485 SPP_plant-cyano sucrose phosphatase; InterPro: IPR012847   This entry describes the sucrose phosphate phosphohydrolase from plants and cyanobacteria (SPP). However, a closely related group of sequences from bacteria and archaea may prove to catalyze the same reaction. SPP is a member of the Class IIB subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants.    Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain, which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain..
Probab=65.74  E-value=4.6  Score=19.96  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=28.4

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCH
Q ss_conf             3412888878999999999997798811308997389899
Q gi|254780455|r  294 GFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDV  333 (418)
Q Consensus       294 GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~  333 (418)
                      .-=+|--+-..-.+..-++|++.|+|.   +||||+|.|.
T Consensus       126 SFFl~~~~~~~V~~~L~~~L~~~g~~v---k~iYSsG~dl  162 (257)
T TIGR01485       126 SFFLDKEAAAEVIKQLEEELKKSGLDV---KLIYSSGKDL  162 (257)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHCCCCE---EEEEECCEEE
T ss_conf             354075654689998998887428975---8997588237


No 39 
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=62.11  E-value=11  Score=17.29  Aligned_cols=82  Identities=18%  Similarity=0.165  Sum_probs=47.1

Q ss_pred             CCCCCEEEEECCCCH---------HHHHHHHHHHH-CCCCEEECCCCCH--HHHHHHHHHHHHHCCCCCCCEEEEE--CC
Q ss_conf             398865986346898---------99999899731-0024341288887--8999999999997798811308997--38
Q gi|254780455|r  264 YDDNLLIVLPDSFGT---------DFFLEHAPSWM-TQWKGFRHDSASP--IEGGEKIIAWWKKMNCNPQNKFLVF--SD  329 (418)
Q Consensus       264 yp~~~~i~L~DTy~~---------~~~l~~~~~~~-~~~~GVR~DSGD~--~~~~~k~~~~l~~~Gidp~~k~iv~--Sd  329 (418)
                      .|++.-+.++||.|.         ++|-....+.. +...=.=+|..||  .....-+.+.++++|.......+|+  .|
T Consensus       233 l~~~~~~ll~DTVGFI~~LP~~Li~aF~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD  312 (351)
T TIGR03156       233 LPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKID  312 (351)
T ss_pred             CCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHH
T ss_conf             79997699981500563088679999999999998598999980588847899999999999976999998899996701


Q ss_pred             CCCHHHHHHHHHHHCC
Q ss_conf             9899999999997248
Q gi|254780455|r  330 NLDVDSIIYTYKHFEN  345 (418)
Q Consensus       330 ~Ld~e~i~~l~~~~~~  345 (418)
                      -++++.+..+...+.+
T Consensus       313 ~~~~~~~~~~~~~~~~  328 (351)
T TIGR03156       313 LLDEPRIERLEEGYPE  328 (351)
T ss_pred             CCCHHHHHHHHHCCCC
T ss_conf             5895778998737998


No 40 
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=60.27  E-value=6.8  Score=18.79  Aligned_cols=61  Identities=11%  Similarity=0.107  Sum_probs=26.4

Q ss_pred             CCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf             1201247889999728987675204898764001220367865499999999996398865986346898
Q gi|254780455|r  209 DSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT  278 (418)
Q Consensus       209 ~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~  278 (418)
                      +.|.|..-+..+..-|--...-..|-|=|.+.      .+||.+-  -+-..++-| +-+.|.++||-|-
T Consensus       102 ar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~P------eGyRKAl--Rlm~~AekF-~lPiitfIDT~GA  162 (317)
T COG0825         102 ARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRP------EGYRKAL--RLMKLAEKF-GLPIITFIDTPGA  162 (317)
T ss_pred             EEECCEEEEEEEEECCCCCHHHHHHCCCCCCC------HHHHHHH--HHHHHHHHH-CCCEEEEECCCCC
T ss_conf             56889358998542376606678760799992------6889999--999999985-9987999508987


No 41 
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=58.86  E-value=13  Score=16.91  Aligned_cols=33  Identities=12%  Similarity=0.274  Sum_probs=21.0

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             997389899999999997248973786334643146
Q gi|254780455|r  325 LVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND  360 (418)
Q Consensus       325 iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d  360 (418)
                      +|.++++|.+.+.++.+.  |.+ |..|+|.-|-.|
T Consensus       288 vi~~G~i~~~~ae~~l~~--G~~-D~V~~gR~liaD  320 (338)
T cd02933         288 LIAAGGYDAESAEAALAD--GKA-DLVAFGRPFIAN  320 (338)
T ss_pred             EEEECCCCHHHHHHHHHC--CCC-CHHHHHHHHHHC
T ss_conf             999699899999999987--996-036852999879


No 42 
>PRK03352 DNA polymerase IV; Validated
Probab=58.71  E-value=13  Score=16.90  Aligned_cols=32  Identities=9%  Similarity=0.055  Sum_probs=16.4

Q ss_pred             CHHHHHHHHHCCCCCCEEEECCCCEEEEEECC
Q ss_conf             98899997508998416873399269998548
Q gi|254780455|r   93 EPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGL  124 (418)
Q Consensus        93 ~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp  124 (418)
                      ...+.+.|+.+--..+..++.|.=+.++.+.|
T Consensus        89 S~~i~~il~~~~~~vE~~SIDEafld~~~~~~  120 (345)
T PRK03352         89 SEEVMALLRDLGHPVEVWGWDEAYLGADTDDP  120 (345)
T ss_pred             HHHHHHHHHHCCCHHEECCCCCCEECCCCCCH
T ss_conf             99999999861916404146601115888999


No 43 
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843    This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=58.57  E-value=8.1  Score=18.24  Aligned_cols=31  Identities=13%  Similarity=0.072  Sum_probs=16.8

Q ss_pred             CCCHHHHHHHHHCCCCC-CEEEECCCCEEEEE
Q ss_conf             78988999975089984-16873399269998
Q gi|254780455|r   91 LFEPKFLSWLSDFQLPE-YDLSHKKGQYVLNF  121 (418)
Q Consensus        91 ~~~~~fl~~L~~~~f~~-~~~~~~eg~~~i~i  121 (418)
                      +-.+++.+-|..-+=-| ..+.+..|||..|-
T Consensus        37 L~T~~W~~Vl~qAa~lGvlqlHfSGGEP~aR~   68 (363)
T TIGR02109        37 LTTEEWTDVLTQAAELGVLQLHFSGGEPLARP   68 (363)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf             88889999999998539067513077666335


No 44 
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=57.26  E-value=13  Score=16.90  Aligned_cols=57  Identities=23%  Similarity=0.310  Sum_probs=41.3

Q ss_pred             HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHC---CCCCHHHHHHHHHC
Q ss_conf             9999999848996599999965887554400002369999999971---69998999999837
Q gi|254780455|r   24 LMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRS---LRITEKERKWLVEN   83 (418)
Q Consensus        24 tM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~---~rft~eei~yL~~~   83 (418)
                      .|.+.++   ++....+++|.-..|..+....|+.|=++.|+..+.   |=|+++|||||.+.
T Consensus       148 RMTe~vl---~~~~~~~~lf~~~Ep~~l~~v~vl~~GR~ALE~AN~elGLAL~~de~DYl~~~  207 (1401)
T TIGR01735       148 RMTESVL---PHEEEAFELFSVPEPLKLTTVDVLGGGRKALEKANQELGLALDEDEIDYLTKR  207 (1401)
T ss_pred             CHHHHHC---CCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             1235434---64345420113256657750011244489999998985304575688999999


No 45 
>KOG2550 consensus
Probab=54.87  E-value=15  Score=16.48  Aligned_cols=94  Identities=13%  Similarity=0.029  Sum_probs=57.5

Q ss_pred             HCCCCEEECCC--CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             10024341288--8878999999999997798811308997389899999999997248973786334643146566666
Q gi|254780455|r  289 MTQWKGFRHDS--ASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTP  366 (418)
Q Consensus       289 ~~~~~GVR~DS--GD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~  366 (418)
                      .+..+-|=+||  |.-.++.+-+ ++-++. + | ...||.+|-+.-+.+..|-..-....+..-|-|.-.  -..   .
T Consensus       261 ~aGvdvviLDSSqGnS~~qiemi-k~iK~~-y-P-~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiC--iTq---e  331 (503)
T KOG2550         261 QAGVDVVILDSSQGNSIYQLEMI-KYIKET-Y-P-DLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSIC--ITQ---K  331 (503)
T ss_pred             HCCCCEEEEECCCCCCHHHHHHH-HHHHHH-C-C-CCEEECCCEEEHHHHHHHHHCCCCEEEECCCCCCEE--EEC---E
T ss_conf             34886899966888504579999-999866-8-8-863431655338889999873676057525567505--453---0


Q ss_pred             CCCCCCCCCCEEEEEEEE---CCCCEEE
Q ss_conf             655677732168985757---6811167
Q gi|254780455|r  367 YQNLQTEKLQIVCKVTKA---NDKHAVK  391 (418)
Q Consensus       367 ~~~~~~~~l~~VyKlve~---~g~P~~K  391 (418)
                      +++.+.|-...|||..+.   -|.|||-
T Consensus       332 vma~GrpQ~TAVy~va~~A~q~gvpviA  359 (503)
T KOG2550         332 VMACGRPQGTAVYKVAEFANQFGVPCIA  359 (503)
T ss_pred             EEECCCCCCCCHHHHHHHHHHCCCCEEC
T ss_conf             1232677620032699999764996550


No 46 
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=53.98  E-value=15  Score=16.38  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=20.5

Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCCEE--EEEECC
Q ss_conf             89973898999999999972489737--863346
Q gi|254780455|r  324 FLVFSDNLDVDSIIYTYKHFENRVQM--IFGWGT  355 (418)
Q Consensus       324 ~iv~Sd~Ld~e~i~~l~~~~~~~~~~--~fGIGT  355 (418)
                      .+++.++++++.+.+..+........  --|||+
T Consensus       188 ~m~~~~~~~~~~~~~~i~~v~~~~~i~lkvGIG~  221 (254)
T PRK02240        188 FMAPCNGLSEKDFLDAIEHVREEAGVELKAGIGI  221 (254)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9987898776789999999874049448864457


No 47 
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=53.76  E-value=13  Score=16.77  Aligned_cols=96  Identities=7%  Similarity=0.026  Sum_probs=44.1

Q ss_pred             CCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf             56710012440117899999999984899659999996588755440000236999999997169998999999837775
Q gi|254780455|r    7 TSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFY   86 (418)
Q Consensus         7 ~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~   86 (418)
                      .+=|||+|-.||=- +-.|+-|.-+++=     --+..||.+           +++|.+.++..+ + .+-  .-.....
T Consensus        43 l~iPivSAaMDTVT-E~~MAIamA~~GG-----iGvIH~Nms-----------ie~Qa~~V~kVK-~-~~~--~i~~Pvt  101 (479)
T PRK07807         43 TTIPVVVANMTAVA-GRRMAETVARRGG-----LVVLPQDLP-----------IDAVAETVAWVK-S-RDL--VFDTPVT  101 (479)
T ss_pred             CCCCEEECCCCCCC-CHHHHHHHHHCCC-----EEEECCCCC-----------HHHHHHHHHHHH-C-CCC--EECCCEE
T ss_conf             87876845875447-4999999997798-----599879999-----------999999999971-1-377--4369989


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEC
Q ss_conf             5555789889999750899841687339926999854
Q gi|254780455|r   87 GKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHG  123 (418)
Q Consensus        87 ~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieG  123 (418)
                      .+...--.+-++..+...+++..+...+|.++=-|+.
T Consensus       102 i~pd~tv~d~~~l~~~~~~sg~pVv~~~gkLvGIvT~  138 (479)
T PRK07807        102 LAPDDTVSDALALIHKRAHGAVVVVDEEGRPVGLVTE  138 (479)
T ss_pred             ECCCCCHHHHHHHHHHHCCCCCCEECCCCCEEEEEEC
T ss_conf             7898719999999998378887414679947889821


No 48 
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=53.66  E-value=15  Score=16.35  Aligned_cols=37  Identities=3%  Similarity=0.067  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             99999999997798811308997389899999999997
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH  342 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~  342 (418)
                      -++|++++|++.|+++... =+..++++.+.+..+.+.
T Consensus        12 t~rka~~~Le~~gi~~~~~-d~~~~p~t~eeL~~~l~~   48 (113)
T cd03033          12 NNARQKALLEAAGHEVEVR-DLLTEPWTAETLRPFFGD   48 (113)
T ss_pred             HHHHHHHHHHHCCCCCEEE-EEECCCCCHHHHHHHHHH
T ss_conf             5799999999879994798-610689699999999985


No 49 
>pfam05165 GGDN GGDN family. I have named this protein family of unknown function GGDN after the most conserved motif. The proteins are 200-270 amino acids in length.
Probab=52.54  E-value=16  Score=16.23  Aligned_cols=32  Identities=16%  Similarity=0.334  Sum_probs=19.9

Q ss_pred             EEEECCCCCHHHHHHHHHHHCCCC--EEEEEECC
Q ss_conf             899738989999999999724897--37863346
Q gi|254780455|r  324 FLVFSDNLDVDSIIYTYKHFENRV--QMIFGWGT  355 (418)
Q Consensus       324 ~iv~Sd~Ld~e~i~~l~~~~~~~~--~~~fGIGT  355 (418)
                      .+++.+++++..+..+.+......  ..--|||+
T Consensus       181 ~m~~~~~~~~~~~~~~i~~i~~~~~i~lkvGIG~  214 (246)
T pfam05165       181 FMAPCNGIDAGIVLDINNSVKETVDVDLKAGIGI  214 (246)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9997898657789999999886529527851456


No 50 
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=51.71  E-value=16  Score=16.14  Aligned_cols=68  Identities=13%  Similarity=0.098  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC----CEEEECCCCEEEEEECC
Q ss_conf             236999999997169998999999837775555578988999975089984----16873399269998548
Q gi|254780455|r   57 ESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPE----YDLSHKKGQYVLNFHGL  124 (418)
Q Consensus        57 ~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~----~~~~~~eg~~~i~ieGp  124 (418)
                      ..-++++|.+++.-.+|+||.++|.+-....-+....|.||+|-+...-.+    ..|....+.-...++|.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~D~~G~   91 (468)
T PRK11522         20 LACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQ   91 (468)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCC
T ss_conf             456799999998623798998675798999998526837777623211378636899965987879969999


No 51 
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=50.89  E-value=17  Score=16.06  Aligned_cols=38  Identities=8%  Similarity=0.093  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             999999999977988113089973898999999999972
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      -++|+++|+++.|+++.. .-+..+.++.+.+.++.++.
T Consensus        13 t~rka~~~L~~~gi~~~~-~~~~~~~~s~~eL~~~l~~~   50 (117)
T COG1393          13 TCRKALAWLEEHGIEYTF-IDYLKTPPSREELKKILSKL   50 (117)
T ss_pred             HHHHHHHHHHHCCCCCEE-EEEECCCCCHHHHHHHHHHC
T ss_conf             899999999986999679-88206999999999999984


No 52 
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=48.84  E-value=18  Score=15.85  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=18.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
Q ss_conf             8878999999999997798811308997389899999
Q gi|254780455|r  300 ASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSI  336 (418)
Q Consensus       300 GD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i  336 (418)
                      |-+.....|+    .+.||. ++..|+.++.|+.+..
T Consensus       205 GTL~dIa~kv----~~~~i~-rTAlIiVG~~l~~~~~  236 (254)
T COG2875         205 GTLEDIAEKV----KEAGIR-RTALIIVGDVLDPEGF  236 (254)
T ss_pred             EEHHHHHHHH----HHCCCE-EEEEEEECCCCCCCCC
T ss_conf             6599999999----865960-6899998355575766


No 53 
>KOG3841 consensus
Probab=48.28  E-value=18  Score=15.83  Aligned_cols=33  Identities=15%  Similarity=0.188  Sum_probs=15.0

Q ss_pred             CCCCCCH----HHHHHHHHCCCCCCEEEECCCCEEEEEECCHH
Q ss_conf             5557898----89999750899841687339926999854877
Q gi|254780455|r   88 KKQLFEP----KFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWK  126 (418)
Q Consensus        88 ~~~~~~~----~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~  126 (418)
                      ++..|.|    .|.+-|+-+--.++      ..++|+=||.++
T Consensus        75 aegvWSpdIEqsFqEALaiyppcGr------rKIilsdegkmy  111 (455)
T KOG3841          75 AEGVWSPDIEQSFQEALAIYPPCGR------RKIILSDEGKMY  111 (455)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCC------EEEEECCCCCCC
T ss_conf             5666681389999999863388885------068874676322


No 54 
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804   Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous.   Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) .    The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction .   Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=47.83  E-value=19  Score=15.74  Aligned_cols=57  Identities=23%  Similarity=0.250  Sum_probs=41.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHCCC-------CEEH---------HHHHHHHHHC--CCCCCCC--CCHHHHHHHHC
Q ss_conf             84244347978899999999842121-------2012---------4788999972--8987675--20489876400
Q gi|254780455|r  184 DFGTRRRHSLTWQKWCIEALQEGIKD-------SFLG---------TSNALLAMNY--KINAIGT--SAHELPMVAAA  241 (418)
Q Consensus       184 eFG~RR~~s~~~q~~~v~~~raa~~~-------gf~G---------TSNv~aa~~~--gi~~~GT--maHs~v~a~~~  241 (418)
                      .||+|+|=.. +-.++++-++.||.-       .|-|         ||+|.+|.+.  .+|+.|=  .||.+-+++.-
T Consensus       520 SM~ar~RM~~-~KGavLsLL~DAYq~RDkValI~FrG~~AevlLPPT~sv~~A~r~L~~lPtGGrTPLa~gL~~A~~v  596 (688)
T TIGR02442       520 SMAARGRMAA-AKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGRTPLAAGLLKAAEV  596 (688)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             0442357899-8999999888888627768886236734357658788489999999728898987458999999999


No 55 
>PRK02406 DNA polymerase IV; Validated
Probab=47.77  E-value=19  Score=15.74  Aligned_cols=28  Identities=4%  Similarity=-0.052  Sum_probs=12.7

Q ss_pred             HHHHHHHHCCCCCCEEEECCCCEEEEEECC
Q ss_conf             899997508998416873399269998548
Q gi|254780455|r   95 KFLSWLSDFQLPEYDLSHKKGQYVLNFHGL  124 (418)
Q Consensus        95 ~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp  124 (418)
                      ...+.|+.  |++.+-...-.|-.+.+++.
T Consensus        89 ~i~~il~~--~~~~vE~~SIDEaflDvt~~  116 (355)
T PRK02406         89 QIREIFRR--YTDLIEPLSLDEAYLDVTDS  116 (355)
T ss_pred             HHHHHHHH--CCCCEEECCCCEEEEECCCC
T ss_conf             99999871--79826662477078863554


No 56 
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=47.24  E-value=19  Score=15.68  Aligned_cols=232  Identities=14%  Similarity=0.049  Sum_probs=115.1

Q ss_pred             CCCCHHHHCCHHH-------HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             7100124401178-------999999999848996599999965887554400002369999999971699989999998
Q gi|254780455|r    9 DPIISSLLDTDFY-------KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLV   81 (418)
Q Consensus         9 ~piI~SlLdTD~Y-------kltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~   81 (418)
                      +.+|+.-|.-|+=       -+|- +. +  -++..++..+..|.+       .|++|+...-.-++.+           
T Consensus        24 ~~~i~~AL~EDlG~~~d~~gDiTs-~l-i--p~d~~~~A~i~ake~-------gVl~G~~~~~~vf~~~-----------   81 (296)
T PRK09016         24 PAAVAQALREDLGGTVDANNDITA-QL-L--PADSQSHATIITRED-------GVFCGKRWVEEVFIQL-----------   81 (296)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCHH-HH-C--CCCCEEEEEEEECCC-------EEEECHHHHHHHHHHH-----------
T ss_conf             999999999776899899985236-54-6--999879999998799-------8997699999999996-----------


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHCC---CCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             37775555578988999975089---984168733992699985487786778889999998888877531348667999
Q gi|254780455|r   82 ENSFYGKKQLFEPKFLSWLSDFQ---LPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDL  158 (418)
Q Consensus        82 ~~~~~~~~~~~~~~fl~~L~~~~---f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~  158 (418)
                                 ++       +.+   +-.+.-.+.+|+.+++|+||-.....-|=..||++..+...+|..         
T Consensus        82 -----------d~-------~v~~~~~~~DG~~v~~G~~i~~i~G~a~~IL~~ER~aLNfLqrlSGIAT~T---------  134 (296)
T PRK09016         82 -----------GD-------DVTIEWHVDDGDKITANQTLCELTGPARVLLTGERTALNFVQTLSGVATEV---------  134 (296)
T ss_pred             -----------CC-------CEEEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf             -----------99-------739999879898838999999999768999999999999999999999999---------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH--HHHHHHHHHHHH-CCCCEEHHHHHHHHHHCCC----CCCCCC
Q ss_conf             999999999987776742699759984244347978--899999999842-1212012478899997289----876752
Q gi|254780455|r  159 LYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLT--WQKWCIEALQEG-IKDSFLGTSNALLAMNYKI----NAIGTS  231 (418)
Q Consensus       159 ~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~--~q~~~v~~~raa-~~~gf~GTSNv~aa~~~gi----~~~GTm  231 (418)
                            .+...++    ...+.+++  .||--.+-.  .|       ++| ..||   -.|    +++|+    -+.-  
T Consensus       135 ------~~~V~~i----~~~~~~il--dTRKT~PGlR~le-------KyAV~~GG---G~n----HR~gL~D~iLIKd--  186 (296)
T PRK09016        135 ------RRYVELL----AGTNTQLL--DTRKTLPGLRSAL-------KYAVLCGG---GAN----HRLGLSDAFLIKE--  186 (296)
T ss_pred             ------HHHHHHH----CCCCCEEE--ECCCCCCCCHHHH-------HHHHHHCC---CCC----CCCCCCCEEEEEC--
T ss_conf             ------9999970----79887897--4566687640999-------99999679---123----3587610799855--


Q ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf             04898764001220367865499999999996398865986346898999998997310024341288887899999999
Q gi|254780455|r  232 AHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIA  311 (418)
Q Consensus       232 aHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~  311 (418)
                      -|  +.+.++..           .|...--...|...-..=+||.  +.+ .  .....+-+.|=+|--+|... +++.+
T Consensus       187 NH--i~~~g~i~-----------~av~~ar~~~~~~~IeVEv~~l--~q~-~--eal~~gaDiIlLDN~s~~~~-k~av~  247 (296)
T PRK09016        187 NH--IIASGSIR-----------QAVEKAFWLHPDVPVEVEVENL--DEL-D--QALKAGADIIMLDNFTTEQM-REAVK  247 (296)
T ss_pred             CC--HHHHCCHH-----------HHHHHHHHHCCCCCEEEEECCH--HHH-H--HHHHCCCCEEEECCCCHHHH-HHHHH
T ss_conf             60--56517899-----------9999999868998589996878--999-9--99965999999889899999-99999


Q ss_pred             HHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             9997798811308997389899999999997
Q gi|254780455|r  312 WWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH  342 (418)
Q Consensus       312 ~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~  342 (418)
                      +.   +  + ...+=+|++++.+.+.+.-+.
T Consensus       248 ~~---~--~-~~~lEaSGgI~l~ni~~yA~t  272 (296)
T PRK09016        248 RT---N--G-KAALEVSGNVTLETLREFAET  272 (296)
T ss_pred             HH---C--C-CEEEEEECCCCHHHHHHHHHC
T ss_conf             74---7--9-679998789989999999972


No 57 
>TIGR01617 arsC_related conserved hypothetical protein; InterPro: IPR006504   These sequences are a part of the Arsenate reductase family of sequences. The family includes a glutaredoxin-dependent arsenate reductase that works together with an arsenite exporter. It also includes an uncharacterised family associated with nitrogenase system genes in a number of phylogenetically distant species. The function of this group of sequences seems unlikely to be arsenate reductase, although that assignment has been given to a number of members of this family. .
Probab=46.13  E-value=20  Score=15.57  Aligned_cols=47  Identities=13%  Similarity=0.080  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             999999999997798811308997389899999999997248973786334643
Q gi|254780455|r  304 EGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       304 ~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      .-++|+++||++.||+- +...+..|++.-|.+..+...+.      =||++-+
T Consensus        10 ~tckKa~~wL~~~~i~y-~~i~~~~~~~~~e~l~~~l~~~~------~g~~~l~   56 (122)
T TIGR01617        10 TTCKKARRWLEANGIEY-EEIDLKEDTPTREELKEILSLLE------DGIDPLL   56 (122)
T ss_pred             HHHHHHHHHHHHCCCCC-CEEECCCCCCCHHHHHHHHHHHH------HHHHHHH
T ss_conf             12698999998539853-20003458978789999987401------0012333


No 58 
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=45.97  E-value=20  Score=15.55  Aligned_cols=83  Identities=13%  Similarity=0.084  Sum_probs=46.4

Q ss_pred             HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf             67426997599842443479788999999998421212012478899997289876752048987640012203678654
Q gi|254780455|r  173 KLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNA  252 (418)
Q Consensus       173 ~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~  252 (418)
                      ++.+..|.++.-+-.=-+-|.+....+++++|.             .+++||+|.+|-|-|.-.+.- ++.-+...... 
T Consensus        86 DV~amGG~Pv~~vd~isa~s~d~~~ei~eglr~-------------~a~kfgvpivGGhthpd~~y~-vl~v~i~gl~~-  150 (324)
T COG2144          86 DVAAMGGEPVGAVDAISAKSEDQAREILEGLRK-------------GARKFGVPIVGGHTHPDTPYC-VLDVVIGGLIA-  150 (324)
T ss_pred             HHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHH-------------HHHHCCCCEECCCCCCCCCCC-EEEEEEECCCC-
T ss_conf             335517961488886434878999999999998-------------888549853467158887776-44468740236-


Q ss_pred             HHHHHHHHH---HHCCCCCEEEEEC
Q ss_conf             999999999---9639886598634
Q gi|254780455|r  253 PYQMMQQWN---RLYDDNLLIVLPD  274 (418)
Q Consensus       253 ~~~a~~~~~---~~yp~~~~i~L~D  274 (418)
                          -+...   ..=||++.|++.|
T Consensus       151 ----~e~Ii~s~~Ak~GD~lI~~~d  171 (324)
T COG2144         151 ----EEPIITSGTAKPGDLLIFVGD  171 (324)
T ss_pred             ----CCCCCCCCCCCCCCEEEEEEC
T ss_conf             ----542303689886877999961


No 59 
>pfam03255 ACCA Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit. Acetyl co-enzyme A carboxylase carboxyltransferase is composed of an alpha and beta subunit.
Probab=45.36  E-value=20  Score=15.49  Aligned_cols=86  Identities=16%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC-CCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC----
Q ss_conf             973898999999999972489737863346431465666666-556777321689857576811167326887524----
Q gi|254780455|r  326 VFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPY-QNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT----  400 (418)
Q Consensus       326 v~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~-~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t----  400 (418)
                      |+|| |+.+....+-.+. .++...-= =.++..||.-+.+- ...+.|  .+|.=+..++|+||+=|....|+.|    
T Consensus        48 iys~-LtpWQkVqvARHP-~RP~t~DY-I~~if~dF~ELhGDR~f~DD~--AIigG~a~i~~~~v~viG~qKG~~t~e~i  122 (145)
T pfam03255        48 IYSN-LTPWQRVQLARHP-DRPTTLDY-IENILDDFIELHGDRAGADDP--AIVGGLGRIDGRPVVVIGHQKGRDTKENL  122 (145)
T ss_pred             HHHC-CCHHHHHHHHHCC-CCCCHHHH-HHHHCCCCEEECCCCCCCCCC--CCEEEEEEECCEEEEEEEEECCCCHHHHH
T ss_conf             9967-9999999987487-88869999-998606677633885666697--40577889999689999872588768888


Q ss_pred             ----C--CHHHHHHHHHHCCCC
Q ss_conf             ----8--889999999980966
Q gi|254780455|r  401 ----G--DISEIKRYLKIFKIK  416 (418)
Q Consensus       401 ----g--~~~~~~~~~~~~~~~  416 (418)
                          |  .++.||+.+|.+...
T Consensus       123 ~rNFGm~~PeGYRKa~Rlm~lA  144 (145)
T pfam03255       123 LRNFGMPAPEGYRKALRLMKHA  144 (145)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHC
T ss_conf             8628999910779999999855


No 60 
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753    The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=45.34  E-value=21  Score=15.49  Aligned_cols=118  Identities=15%  Similarity=0.151  Sum_probs=63.1

Q ss_pred             EEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHH
Q ss_conf             012478899997289876752048987640012203678654999999999963988659863468-9899999899731
Q gi|254780455|r  211 FLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSF-GTDFFLEHAPSWM  289 (418)
Q Consensus       211 f~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy-~~~~~l~~~~~~~  289 (418)
                      |--|-++.=|..  --..|.++|  ||+.|.+..+-..+|-|+-+....|.+.||..-.|=|=-=| ++.+-|+.+..+.
T Consensus       222 FQDTN~iQYaw~--rllAg~~~~--V~~VGDDDQsIYgwRGA~veni~~fl~dF~~~~tirLEQNYRS~~nIL~AAN~lI  297 (741)
T TIGR01075       222 FQDTNKIQYAWI--RLLAGETGN--VMIVGDDDQSIYGWRGAQVENIQKFLKDFPIAETIRLEQNYRSTANILAAANALI  297 (741)
T ss_pred             CCCCHHHHHHHH--HHHCCCCCC--EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             245006999999--996089963--7988558742012457641888999974678885342003221788999988998


Q ss_pred             CCC-----CEEECCC--CCH------------HHHHHHHHHHHHHCCCCCCCEEEEE-CCCCC
Q ss_conf             002-----4341288--887------------8999999999997798811308997-38989
Q gi|254780455|r  290 TQW-----KGFRHDS--ASP------------IEGGEKIIAWWKKMNCNPQNKFLVF-SDNLD  332 (418)
Q Consensus       290 ~~~-----~GVR~DS--GD~------------~~~~~k~~~~l~~~Gidp~~k~iv~-Sd~Ld  332 (418)
                      +.-     +-++=|+  ||+            +.+...-++.|.+.|-+-..+-|.+ ||.--
T Consensus       298 anN~~RlGK~LwT~g~~Ge~i~~YsAfneLdEArFvv~~~~~w~~~GG~l~e~AvLYRsNAQS  360 (741)
T TIGR01075       298 ANNDERLGKNLWTDGEVGEPISLYSAFNELDEARFVVSRIKAWQREGGALDEIAVLYRSNAQS  360 (741)
T ss_pred             HCCCCCCCCCEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH
T ss_conf             528865675301345678702576513413789999999999986589641365663255246


No 61 
>PRK05337 beta-hexosaminidase; Provisional
Probab=45.12  E-value=16  Score=16.30  Aligned_cols=36  Identities=17%  Similarity=0.286  Sum_probs=26.1

Q ss_pred             ECCCCCHHHHHHHHHHH-H-HHCCCCCCCEEEEECCCCCHHHH
Q ss_conf             12888878999999999-9-97798811308997389899999
Q gi|254780455|r  296 RHDSASPIEGGEKIIAW-W-KKMNCNPQNKFLVFSDNLDVDSI  336 (418)
Q Consensus       296 R~DSGD~~~~~~k~~~~-l-~~~Gidp~~k~iv~Sd~Ld~e~i  336 (418)
                      .+|. .|+.+|+++++- | +++|++    .+|+||+|.-+-+
T Consensus       219 ~iD~-~PAs~S~~~i~~iLR~~lgF~----GviiSDDL~M~a~  256 (336)
T PRK05337        219 QVDP-QPAGFSRYWLQDILRQELGFD----GVIFSDDLSMEGA  256 (336)
T ss_pred             CCCC-CCCCCCHHHHHHHHHHHCCCC----CEEECCCCCCCCH
T ss_conf             6689-877379999999999755998----4897627586111


No 62 
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway,  (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2  and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis..
Probab=44.45  E-value=11  Score=17.22  Aligned_cols=23  Identities=22%  Similarity=0.121  Sum_probs=12.2

Q ss_pred             CCCCEEHHHHHHHHHHCCCCCCCCCCH
Q ss_conf             121201247889999728987675204
Q gi|254780455|r  207 IKDSFLGTSNALLAMNYKINAIGTSAH  233 (418)
Q Consensus       207 ~~~gf~GTSNv~aa~~~gi~~~GTmaH  233 (418)
                      .+.|..=|++    +.-||.+.|=|-|
T Consensus       153 TivGvf~tP~----y~~G~~V~GyHlH  175 (234)
T TIGR01252       153 TIVGVFWTPA----YAKGINVAGYHLH  175 (234)
T ss_pred             EEEEEEECHH----HHCCCCCCCCEEE
T ss_conf             9999710715----5303788830578


No 63 
>PRK03858 DNA polymerase IV; Validated
Probab=43.98  E-value=21  Score=15.35  Aligned_cols=28  Identities=14%  Similarity=0.137  Sum_probs=12.7

Q ss_pred             HHHHHHHHCCCCCCEEEECCCCEEEEEECC
Q ss_conf             899997508998416873399269998548
Q gi|254780455|r   95 KFLSWLSDFQLPEYDLSHKKGQYVLNFHGL  124 (418)
Q Consensus        95 ~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp  124 (418)
                      ...+.|+.  +++.+-...=.|-.+.++|.
T Consensus        82 ~i~~il~~--~~p~ve~ySIDE~FlDlt~~  109 (398)
T PRK03858         82 AVFEVFRD--TTPLVEPLSIDEAFLDVSGL  109 (398)
T ss_pred             HHHHHHHH--HCCCEEECCCCEEEEECCCC
T ss_conf             99999997--19751651477278854544


No 64 
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=43.30  E-value=12  Score=17.19  Aligned_cols=14  Identities=7%  Similarity=0.128  Sum_probs=7.3

Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             99999999716999
Q gi|254780455|r   60 LRTQLDHVRSLRIT   73 (418)
Q Consensus        60 L~~~i~~l~~~rft   73 (418)
                      ++..|+-|++-+=|
T Consensus       163 v~~fi~~m~das~~  176 (1032)
T PRK09853        163 MQQFIDNMMDASDH  176 (1032)
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             89999986633147


No 65 
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 .    Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=42.81  E-value=22  Score=15.23  Aligned_cols=111  Identities=11%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             EECCCC--HHHHHHHHHH-HHCCCCEEECCCCCHHHHH--HHHHHHHHHCCCCCC------------------------C
Q ss_conf             634689--8999998997-3100243412888878999--999999997798811------------------------3
Q gi|254780455|r  272 LPDSFG--TDFFLEHAPS-WMTQWKGFRHDSASPIEGG--EKIIAWWKKMNCNPQ------------------------N  322 (418)
Q Consensus       272 L~DTy~--~~~~l~~~~~-~~~~~~GVR~DSGD~~~~~--~k~~~~l~~~Gidp~------------------------~  322 (418)
                      +.||=+  .+....-... ....-.-+|+-||||.-++  .+-.+.|+++||+..                        +
T Consensus        49 ~~~sA~m~L~ei~~~m~~a~~~GK~VvRLHsGDPsIYGA~~EQ~~~L~~~gI~~e~vPGvSsf~AAAA~l~~ELT~P~vs  128 (252)
T TIGR01465        49 VVNSAAMSLEEIVDIMVDAVREGKLVVRLHSGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVS  128 (252)
T ss_pred             EEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCE
T ss_conf             86050269889999999998669849998508755776699999999867897798688738989999730014788403


Q ss_pred             EEEEE---CCCCC----HHHHHHHHHHHCCCCEEEEEECCCC---CCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             08997---38989----9999999997248973786334643---146566666655677732168985757681
Q gi|254780455|r  323 KFLVF---SDNLD----VDSIIYTYKHFENRVQMIFGWGTNL---TNDFDGCTPYQNLQTEKLQIVCKVTKANDK  387 (418)
Q Consensus       323 k~iv~---Sd~Ld----~e~i~~l~~~~~~~~~~~fGIGT~L---t~d~~~~~~~~~~~~~~l~~VyKlve~~g~  387 (418)
                      .+||+   |+.=.    -|++.+|-++  +...+.|==.+.+   -+|+-.  ..+.. .-|+-+|||.+.-+.+
T Consensus       129 QtvilTR~eG~RtPmPe~E~l~~lA~h--gaTm~IfLs~~~~~~vv~~L~~--~GY~~-DTPV~vVyratWPDE~  198 (252)
T TIGR01465       129 QTVILTRAEGRRTPMPEGEKLADLAKH--GATMAIFLSAHIIDKVVKELIE--GGYSE-DTPVAVVYRATWPDEK  198 (252)
T ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHH--CCCCC-CCCEEEEEEECCCCCE
T ss_conf             424467543435457766789988741--2313567789999999999983--77688-8878989851487565


No 66 
>pfam08519 RFC1 Replication factor RFC1 C terminal domain. This is the C terminal domain of replication factor C, RFC1. RFC complexes hydrolyse ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo.
Probab=42.15  E-value=23  Score=15.16  Aligned_cols=12  Identities=17%  Similarity=0.246  Sum_probs=4.5

Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999997798
Q gi|254780455|r  307 EKIIAWWKKMNC  318 (418)
Q Consensus       307 ~k~~~~l~~~Gi  318 (418)
                      +++++.+|+.++
T Consensus       106 ~~vi~~Md~Y~L  117 (155)
T pfam08519       106 EEVIELMDEYYL  117 (155)
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999998499


No 67 
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=42.00  E-value=23  Score=15.15  Aligned_cols=67  Identities=16%  Similarity=0.085  Sum_probs=47.0

Q ss_pred             CCCHHHHHHHHHHHHC--CC---------CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             6898999998997310--02---------434128888789999999999977988113089973898999999999972
Q gi|254780455|r  275 SFGTDFFLEHAPSWMT--QW---------KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       275 Ty~~~~~l~~~~~~~~--~~---------~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      +|+++-.+..-.....  .+         .--|-||.|+..+..++|+-|..-|+.++   +=.|++++.+.+..-..+.
T Consensus       216 sYs~eelL~lCek~~iPlVfD~HHh~v~~~l~~~~~~sl~~~~~r~r~TW~~~~lq~k---vHlSs~~~~~~dr~H~~~i  292 (347)
T COG4294         216 SYSTEELLPLCEKLNIPLVFDAHHHNVHPGLDREDSPSLMELIPRIRETWTRPGLQQK---VHLSSPASGTADRRHSDYI  292 (347)
T ss_pred             CCCHHHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE---EEECCCCCCCCCCHHHHHH
T ss_conf             3669999999887389879850123306888655781499999999974258787614---7756888754440266652


Q ss_pred             C
Q ss_conf             4
Q gi|254780455|r  344 E  344 (418)
Q Consensus       344 ~  344 (418)
                      .
T Consensus       293 ~  293 (347)
T COG4294         293 H  293 (347)
T ss_pred             C
T ss_conf             0


No 68 
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase; InterPro: IPR012801    Members of this family known so far are catechol 1,2-dioxygenases of the proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the actinobacteria, which are quite similar to each other and resolved by separate entries. This enzyme catalyses intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogues 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.; GO: 0005506 iron ion binding, 0018576 catechol 12-dioxygenase activity, 0019614 catechol catabolic process.
Probab=41.51  E-value=17  Score=16.05  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=31.1

Q ss_pred             HHHHHHHHHCCCCCHHHH----HHHHHCCCCCCCCCCCHH--HHHHH
Q ss_conf             999999997169998999----999837775555578988--99997
Q gi|254780455|r   60 LRTQLDHVRSLRITEKER----KWLVENSFYGKKQLFEPK--FLSWL  100 (418)
Q Consensus        60 L~~~i~~l~~~rft~eei----~yL~~~~~~~~~~~~~~~--fl~~L  100 (418)
                      |+.+-+.+++|=+|++|.    +||-+.+-.....++.+.  |-+||
T Consensus        33 l~Dlf~~IeDLdIT~~E~W~A~~YLn~lGq~~E~GLLaAGLG~eHfL   79 (288)
T TIGR02439        33 LSDLFRAIEDLDITPDEFWAAVNYLNRLGQSNEAGLLAAGLGFEHFL   79 (288)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             67787765532178678899999998713036620103212035787


No 69 
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=40.92  E-value=24  Score=15.04  Aligned_cols=19  Identities=11%  Similarity=0.312  Sum_probs=7.8

Q ss_pred             CCCCCCCEEEEEEEECCCC
Q ss_conf             6777321689857576811
Q gi|254780455|r  370 LQTEKLQIVCKVTKANDKH  388 (418)
Q Consensus       370 ~~~~~l~~VyKlve~~g~P  388 (418)
                      .-++++-.+-..+|+..+|
T Consensus       237 l~~d~~~L~aeViEik~kp  255 (353)
T cd06815         237 LYQDAFTLEAEIIEIKEKP  255 (353)
T ss_pred             CCCCCEEEEEEEEEEECCC
T ss_conf             0464189999999950467


No 70 
>KOG1495 consensus
Probab=40.72  E-value=24  Score=15.02  Aligned_cols=14  Identities=36%  Similarity=0.681  Sum_probs=6.0

Q ss_pred             EEHHHHHHHHHHCC
Q ss_conf             01247889999728
Q gi|254780455|r  211 FLGTSNALLAMNYK  224 (418)
Q Consensus       211 f~GTSNv~aa~~~g  224 (418)
                      |.-+.||.+.+-|.
T Consensus        71 f~~~~~V~~~~Dy~   84 (332)
T KOG1495          71 FLSTPNVVASKDYS   84 (332)
T ss_pred             CCCCCCEEECCCCC
T ss_conf             02688367667632


No 71 
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.18  E-value=24  Score=14.96  Aligned_cols=17  Identities=24%  Similarity=0.044  Sum_probs=7.6

Q ss_pred             EEECCCCCHHHHHHHHH
Q ss_conf             34128888789999999
Q gi|254780455|r  294 GFRHDSASPIEGGEKII  310 (418)
Q Consensus       294 GVR~DSGD~~~~~~k~~  310 (418)
                      +.++|.-+...+.++++
T Consensus       198 ~~~~~~~~~~~i~~~v~  214 (308)
T cd05292         198 GRPFDEEVREEIFEEVR  214 (308)
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             78899999999999998


No 72 
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps:  Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i   Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=39.83  E-value=24  Score=14.96  Aligned_cols=30  Identities=13%  Similarity=0.119  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf             678654999999999963988659863468989
Q gi|254780455|r  247 IETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTD  279 (418)
Q Consensus       247 ~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~  279 (418)
                      ..||.|-  -+-.+++-| +-+-|+++||-|-+
T Consensus       143 ~GYRKAL--rLm~~AerF-~~PIi~fiDT~GAY  172 (329)
T TIGR00513       143 EGYRKAL--RLMKMAERF-NLPIITFIDTPGAY  172 (329)
T ss_pred             CCHHHHH--HHHHHHHHC-CCCEEEEECCCCCC
T ss_conf             6047999--999877761-79858865388887


No 73 
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, 
Probab=39.56  E-value=25  Score=14.90  Aligned_cols=64  Identities=17%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             EEECCCCC-HHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             34128888-78999999999997798-811308997389899999999997248973786334643
Q gi|254780455|r  294 GFRHDSAS-PIEGGEKIIAWWKKMNC-NPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       294 GVR~DSGD-~~~~~~k~~~~l~~~Gi-dp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      +++...|- ...-.+++.+.+.+.+- ++....|++|||-+-...........+-.+-+||+|+..
T Consensus        70 ~l~~~GgT~i~~gl~~a~~~l~~~~~~~~~~~IiLlTDG~~n~~~~~~~~~~~~i~i~tiGiG~~~  135 (155)
T cd01466          70 GLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAVVLRADNAPIPIHTFGLGASH  135 (155)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             377688872679999999999843668983089998269864057789987179739999978867


No 74 
>pfam11557 DUF3233 Protein of unknown function (DUF3233). This is a bacterial family of uncharacterized proteins.
Probab=38.63  E-value=18  Score=15.93  Aligned_cols=56  Identities=20%  Similarity=0.155  Sum_probs=39.0

Q ss_pred             CCEEEEEECCCC---CCCCCCCCCCCCCCCCCCCEEEEEEEEC---CCCEEEEECCCCCCCC
Q ss_conf             973786334643---1465666666556777321689857576---8111673268875248
Q gi|254780455|r  346 RVQMIFGWGTNL---TNDFDGCTPYQNLQTEKLQIVCKVTKAN---DKHAVKLSDDPAKTTG  401 (418)
Q Consensus       346 ~~~~~fGIGT~L---t~d~~~~~~~~~~~~~~l~~VyKlve~~---g~P~~KlSd~~~K~tg  401 (418)
                      .-..++|+||+|   -||+.--+|.-.+-+|.|++++--+...   .+|.+|++=...|.=|
T Consensus       148 ~Wtl~~g~g~Hlm~Y~N~~~yns~~~~~~~~~lDg~~~NtsawA~~~ePn~kl~Y~~~~~wG  209 (327)
T pfam11557       148 NWTLSVGIGAHLMHYRNTYTYNSDVSKSYSSILDGLLVNTSAWAFIVEPNIKLKYTQEKSWG  209 (327)
T ss_pred             CEEEEECCCEEEEEEECCCEECCHHHHHHHHHHCCEEEECCCCEEEECCCEEEEEECCCCCC
T ss_conf             18997616307999835632168788865565357199533230665675068985578761


No 75 
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=36.59  E-value=28  Score=14.59  Aligned_cols=10  Identities=20%  Similarity=0.348  Sum_probs=4.9

Q ss_pred             HHHHHCCCCC
Q ss_conf             9999728987
Q gi|254780455|r  218 LLAMNYKINA  227 (418)
Q Consensus       218 ~aa~~~gi~~  227 (418)
                      ..|.+++++|
T Consensus       153 ~ia~~l~v~~  162 (306)
T cd05291         153 ALAEKLNVDP  162 (306)
T ss_pred             HHHHHHCCCH
T ss_conf             9999859995


No 76 
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=36.24  E-value=28  Score=14.56  Aligned_cols=31  Identities=23%  Similarity=0.207  Sum_probs=13.5

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             99999779881130899738989999999999724
Q gi|254780455|r  310 IAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE  344 (418)
Q Consensus       310 ~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~  344 (418)
                      .+..+++|+||..+    -++|+++.+..|.+...
T Consensus        39 ~~Ic~~lgId~~~k----~~~Lte~qi~~l~~~i~   69 (149)
T PRK04053         39 RAIARKLGLDPHAK----LGYLSDEEIEKIEEALE   69 (149)
T ss_pred             HHHHHHHCCCCCCC----CCCCCHHHHHHHHHHHH
T ss_conf             99999918998773----07499999999999997


No 77 
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=36.01  E-value=28  Score=14.53  Aligned_cols=38  Identities=8%  Similarity=0.135  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             999999999977988113089973898999999999972
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      -+++++++|++.|+++.. .-+..+.++.+.+..+.+..
T Consensus        11 ~~rka~~~L~~~~i~~~~-~d~~k~~~s~~eL~~~l~~~   48 (105)
T cd02977          11 TSRKALAWLEEHGIEYEF-IDYLKEPPTKEELKELLAKL   48 (105)
T ss_pred             HHHHHHHHHHHCCCCCEE-EHHHHCCCCHHHHHHHHHHC
T ss_conf             899999999857997388-60432269999999999975


No 78 
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=35.67  E-value=22  Score=15.32  Aligned_cols=38  Identities=21%  Similarity=0.230  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             999999999977988113089973898999999999972
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      -++|+++||++.|++... .-+..+.++.+.+..+....
T Consensus        12 t~rkA~~wL~~~~i~~~~-~d~~~~plt~~el~~~l~~~   49 (131)
T PRK01655         12 SCRKAKAWLEEHEIPFTE-RNIFSSPLTIDEIKQILSMT   49 (131)
T ss_pred             HHHHHHHHHHHCCCCCHH-HHHHHCCCCHHHHHHHHHHH
T ss_conf             899999999976998115-67876389999999999981


No 79 
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=35.43  E-value=29  Score=14.47  Aligned_cols=38  Identities=5%  Similarity=0.052  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             999999999977988113089973898999999999972
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      -+++++++|++.|+++.- .=+..+.++.+.+..+.+..
T Consensus        11 t~rka~~~L~~~~i~~~~-idy~~~p~~~~eL~~~~~~~   48 (112)
T cd03034          11 KSRNALALLEEAGIEPEI-VEYLKTPPTAAELRELLAKL   48 (112)
T ss_pred             HHHHHHHHHHHCCCCCEE-EECCCCCCCHHHHHHHHHHC
T ss_conf             899999999987998489-85014679999999999882


No 80 
>PRK10122 UTP--glucose-1-phosphate uridylyltransferase subunit GalF; Provisional
Probab=35.29  E-value=25  Score=14.88  Aligned_cols=56  Identities=11%  Similarity=0.049  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHCCCCCE-EEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf             9999999996398865-986346898999998997310024341288887899999999
Q gi|254780455|r  254 YQMMQQWNRLYDDNLL-IVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIA  311 (418)
Q Consensus       254 ~~a~~~~~~~yp~~~~-i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~  311 (418)
                      .+.|+...++-|+.-+ +-|+|....  ..+.-.-++..+.|-|.|+|++..|.+-.++
T Consensus       219 p~IF~~L~~~~p~~~GEiqLTDAi~~--l~~~~~v~~~~~~G~~~D~G~~~g~l~A~i~  275 (297)
T PRK10122        219 ADIWPELERTQPGAWGRIQLTDAIAE--LAKKQSVDAMLMTGDSYDCGKKMGYMQAFVK  275 (297)
T ss_pred             HHHHHHHHHCCCCCCCEEEHHHHHHH--HHCCCCEEEEEECCEEECCCCHHHHHHHHHH
T ss_conf             79999997089999985889999999--9701987999955179757986269999999


No 81 
>PRK05805 phosphate butyryltransferase; Validated
Probab=35.17  E-value=29  Score=14.44  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=23.1

Q ss_pred             HCCCCEEHHHHHHHH---HHCCCCCCCCCCHHHHHHH
Q ss_conf             212120124788999---9728987675204898764
Q gi|254780455|r  206 GIKDSFLGTSNALLA---MNYKINAIGTSAHELPMVA  239 (418)
Q Consensus       206 a~~~gf~GTSNv~aa---~~~gi~~~GTmaHs~v~a~  239 (418)
                      +.+.|...|++++.+   +.-|+++..+++|-++|-.
T Consensus        94 ~lv~G~~~t~~~lr~~l~~~~g~~~g~~~s~~~~~~~  130 (301)
T PRK05805         94 MVMKGLVDTATFLRAVLNKEIGLRTGKTMSHVAVFEV  130 (301)
T ss_pred             HHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf             7863875543899998510147778871789999996


No 82 
>PRK06223 malate dehydrogenase; Reviewed
Probab=35.02  E-value=29  Score=14.43  Aligned_cols=14  Identities=14%  Similarity=0.313  Sum_probs=8.3

Q ss_pred             HHHHHHCCCCCCCC
Q ss_conf             89999728987675
Q gi|254780455|r  217 ALLAMNYKINAIGT  230 (418)
Q Consensus       217 v~aa~~~gi~~~GT  230 (418)
                      ...|.+++++|.--
T Consensus       153 ~~ia~~l~v~~~~V  166 (312)
T PRK06223        153 YFLAEEFNVSVKDV  166 (312)
T ss_pred             HHHHHHHCCCHHHE
T ss_conf             99999969896574


No 83 
>PRK10853 hypothetical protein; Provisional
Probab=34.25  E-value=30  Score=14.34  Aligned_cols=37  Identities=14%  Similarity=0.028  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             99999999997798811308997389899999999997
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH  342 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~  342 (418)
                      -++|+++||++.||+..-.. +-.++++.+.+....++
T Consensus        12 TckKA~kwL~~~~i~y~f~D-~k~~~~~~~~l~~wl~~   48 (118)
T PRK10853         12 TIKKARRWLEENGIDYRFHD-YRVDGLDSELLNGFIAE   48 (118)
T ss_pred             HHHHHHHHHHHCCCCCEEEE-CCCCCCCHHHHHHHHHH
T ss_conf             99999999998799818963-11469899999999996


No 84 
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990    Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase     IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP .  Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH     IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=33.95  E-value=22  Score=15.25  Aligned_cols=102  Identities=14%  Similarity=0.056  Sum_probs=58.5

Q ss_pred             CCCCEEECCC--CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             0024341288--88789999999999977988113089973898999999999972489737863346431465666666
Q gi|254780455|r  290 TQWKGFRHDS--ASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPY  367 (418)
Q Consensus       290 ~~~~GVR~DS--GD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~  367 (418)
                      +.-+-|=|||  |+-.+..+-+++ -++.=.   ...||+.|=-+.+.+..|-+......+..-|=|-=.|--.     +
T Consensus       250 AGvDv~viDsshGhs~~vl~~ik~-~k~~Yp---~~~iiaGNVaT~~~a~~LI~AgADg~rVGiGpGSICTTr~-----V  320 (476)
T TIGR01302       250 AGVDVIVIDSSHGHSIYVLDSIKK-IKKTYP---DLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI-----V  320 (476)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH-HHHHCC---EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEE-----E
T ss_conf             596589981665453789999999-986388---0579943441178898898528887898368898110015-----6


Q ss_pred             CCCCCCCCCEEEEEEEE---CCCCEE-----EEECCCCCCC
Q ss_conf             55677732168985757---681116-----7326887524
Q gi|254780455|r  368 QNLQTEKLQIVCKVTKA---NDKHAV-----KLSDDPAKTT  400 (418)
Q Consensus       368 ~~~~~~~l~~VyKlve~---~g~P~~-----KlSd~~~K~t  400 (418)
                      ++.+.|=+-.||+-++.   .|.|||     |.|-|+-|+.
T Consensus       321 ~gVGvPQ~TAv~~Va~~A~~~Gi~VIADGGIr~SGDivKAl  361 (476)
T TIGR01302       321 AGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKAL  361 (476)
T ss_pred             EECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
T ss_conf             51276268899999999972799099837756255899999


No 85 
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.87  E-value=31  Score=14.30  Aligned_cols=75  Identities=11%  Similarity=-0.023  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-----HHHHH-HHHHHHCCCCEEEE
Q ss_conf             8999998997310024341288887899999999999779881130899738989-----99999-99997248973786
Q gi|254780455|r  278 TDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLD-----VDSII-YTYKHFENRVQMIF  351 (418)
Q Consensus       278 ~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld-----~e~i~-~l~~~~~~~~~~~f  351 (418)
                      -..|.+.+.+.-+...|+-.=+|--..+.++.++.+++.|..  .+.++..+.+-     .+... .+.+   ....-.|
T Consensus        39 ~e~~~~~a~e~~ad~i~vSsl~g~~~~~~~~l~~~L~e~G~~--di~vvvGG~i~i~~~d~~~~~~~l~~---~Gv~~vF  113 (128)
T cd02072          39 QEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLK--DILLYVGGNLVVGKQDFEDVEKRFKE---MGFDRVF  113 (128)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC--CCEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEE
T ss_conf             999999998739999998232025624899999999967999--99899789867783104899999996---6968574


Q ss_pred             EECCCC
Q ss_conf             334643
Q gi|254780455|r  352 GWGTNL  357 (418)
Q Consensus       352 GIGT~L  357 (418)
                      |=||.+
T Consensus       114 ~pGt~~  119 (128)
T cd02072         114 APGTPP  119 (128)
T ss_pred             CCCCCH
T ss_conf             998799


No 86 
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=33.54  E-value=31  Score=14.27  Aligned_cols=17  Identities=6%  Similarity=0.094  Sum_probs=9.4

Q ss_pred             EEECCCCCHHHHHHHHH
Q ss_conf             99738989999999999
Q gi|254780455|r  325 LVFSDNLDVDSIIYTYK  341 (418)
Q Consensus       325 iv~Sd~Ld~e~i~~l~~  341 (418)
                      |+.-.+++.+.+.-+.-
T Consensus       234 i~vl~~~~~~~~lPll~  250 (384)
T pfam03599       234 ILILRGDDIWELMPVLT  250 (384)
T ss_pred             EEEECCCCHHHHHHHHH
T ss_conf             89973798888605899


No 87 
>TIGR01907 cas_Cse3 CRISPR-associated protein, Cse3 family; InterPro: IPR010179   CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by CT1974 from Chlorobium tepidum, is found in a minority of Cas regions..
Probab=33.26  E-value=19  Score=15.73  Aligned_cols=27  Identities=30%  Similarity=0.785  Sum_probs=22.1

Q ss_pred             CC-CCHHHHCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             71-001244011789999999998489965
Q gi|254780455|r    9 DP-IISSLLDTDFYKILMLQLIWKFYPDIK   37 (418)
Q Consensus         9 ~p-iI~SlLdTD~YkltM~~a~~~~~~~~~   37 (418)
                      .| .+..|-+||.|.++  |..|+.||+++
T Consensus        14 ~P~~l~~l~~~~~Y~lH--q~lw~LFp~~~   41 (246)
T TIGR01907        14 RPADLKKLRSRDSYSLH--QWLWSLFPDVR   41 (246)
T ss_pred             CHHHHHHHHHCCCCHHH--HHHHHHCCCCC
T ss_conf             98999987414873122--46543178960


No 88 
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=33.03  E-value=31  Score=14.21  Aligned_cols=37  Identities=14%  Similarity=0.045  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             99999999997798811308997389899999999997
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH  342 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~  342 (418)
                      -++|++++|++.|++... .-+..+.++.+.+.++.+.
T Consensus        11 tcrkA~k~L~~~~i~~~~-~d~~~~p~~~~el~~~~~~   47 (105)
T cd03035          11 TVKKARKWLEARGVAYTF-HDYRKDGLDAATLERWLAK   47 (105)
T ss_pred             HHHHHHHHHHHCCCCCEE-EEEECCCCCHHHHHHHHHH
T ss_conf             899999999987998089-9756789899999999986


No 89 
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679   DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC).   This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=31.78  E-value=22  Score=15.27  Aligned_cols=144  Identities=14%  Similarity=0.154  Sum_probs=69.8

Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             424434797889999999984212120124788999972898767-5204898764001220367865499999999996
Q gi|254780455|r  185 FGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIG-TSAHELPMVAAAITRTDIETQNAPYQMMQQWNRL  263 (418)
Q Consensus       185 FG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~G-TmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~  263 (418)
                      ||-+.+...-   .++..+|.....      -++.  =+||+=+| |+|-.+.+.|+++.    ++.+|..+++..-...
T Consensus       497 ~g~~sa~nLl---~aIe~sK~~pl~------RlL~--aLGIr~VG~~~A~~La~~f~tl~----~L~~A~~e~~~~~~~f  561 (706)
T TIGR00575       497 FGEKSAQNLL---SAIEKSKKKPLA------RLLF--ALGIRHVGEVTAKLLAKHFGTLD----KLKAASLETLESIYQF  561 (706)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHH------HHHH--HCCCHHHHHHHHHHHHHHCCCHH----HHHHCCHHHHHHHHHH
T ss_conf             5568899999---999985210489------9998--62860357999999998558868----9985082167788751


Q ss_pred             CCCCCEEEEECCCCH------HHHHH--HHH--------HHHCCC--CEEECCCCCHHH-HHHH---HHHHHHHCCCCCC
Q ss_conf             398865986346898------99999--899--------731002--434128888789-9999---9999997798811
Q gi|254780455|r  264 YDDNLLIVLPDSFGT------DFFLE--HAP--------SWMTQW--KGFRHDSASPIE-GGEK---IIAWWKKMNCNPQ  321 (418)
Q Consensus       264 yp~~~~i~L~DTy~~------~~~l~--~~~--------~~~~~~--~GVR~DSGD~~~-~~~k---~~~~l~~~Gidp~  321 (418)
                      =+..+ .. +.-+|-      -+|++  ...        ....++  .||..+|-|..- +.++   -...-+..+-.-.
T Consensus       562 ~~s~L-~~-~~g~G~~vA~~~~~~F~~~~~~~~qPYRta~~~~~L~~~gv~~~~~D~~~~LL~~~~~~~~~~~~~~~~~~  639 (706)
T TIGR00575       562 DRSEL-LS-VEGVGPKVAESIVNFFHDPNNLSLQPYRTAELIEKLEELGVNMESEDEFCRLLDQALKEKVEAELAGSPLA  639 (706)
T ss_pred             CCHHH-HH-CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             60556-41-01402789999999871200013560468999999988316310113578777642011001000575202


Q ss_pred             CEEEEECCCCCH---HHHHHHHHHHCC
Q ss_conf             308997389899---999999997248
Q gi|254780455|r  322 NKFLVFSDNLDV---DSIIYTYKHFEN  345 (418)
Q Consensus       322 ~k~iv~Sd~Ld~---e~i~~l~~~~~~  345 (418)
                      .|++|+++.|+-   +.+.++.+...+
T Consensus       640 GK~fVlTG~L~~~sR~~a~~~~~~lGg  666 (706)
T TIGR00575       640 GKTFVLTGTLSQMSRDEAKELLEALGG  666 (706)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf             776899515688888999999998099


No 90 
>pfam08850 DUF1820 Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.
Probab=31.63  E-value=26  Score=14.75  Aligned_cols=27  Identities=7%  Similarity=0.258  Sum_probs=21.0

Q ss_pred             CCCCCEEEEEEEECCCCEEEEECCCCC
Q ss_conf             773216898575768111673268875
Q gi|254780455|r  372 TEKLQIVCKVTKANDKHAVKLSDDPAK  398 (418)
Q Consensus       372 ~~~l~~VyKlve~~g~P~~KlSd~~~K  398 (418)
                      .=|+..+.++-|++-+-+.|+|+..++
T Consensus        64 yIPm~~IiRIDeV~k~G~akI~~~~~~   90 (99)
T pfam08850        64 YIPMHSIIRIDEVEKEGTAKITEAKPK   90 (99)
T ss_pred             EEEHHHEEEEEEEHHCCCEEEEECCCC
T ss_conf             842112798765111583456405799


No 91 
>pfam03960 ArsC ArsC family. This family is related to glutaredoxins pfam00462.
Probab=31.56  E-value=33  Score=14.05  Aligned_cols=39  Identities=10%  Similarity=0.103  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             9999999999779881130899738989999999999724
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE  344 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~  344 (418)
                      -+++++++|++.|+++.- .-+..+.++.+.+..+.+...
T Consensus         8 t~rka~~~L~~~~i~~~~-~d~~~~p~s~~el~~~l~~~~   46 (111)
T pfam03960         8 TCRKALAWLEEHGIEYQE-IDYLETPPSKEELKDILSKTG   46 (111)
T ss_pred             HHHHHHHHHHHCCCCEEE-EECCCCCCCHHHHHHHHHHCC
T ss_conf             999999999987998089-732467999999999999839


No 92 
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=30.56  E-value=34  Score=13.94  Aligned_cols=54  Identities=15%  Similarity=0.143  Sum_probs=28.5

Q ss_pred             HHHHHHHHHCCCCCE-EEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
Q ss_conf             999999996398865-98634689899999899731002434128888789999999
Q gi|254780455|r  255 QMMQQWNRLYDDNLL-IVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKII  310 (418)
Q Consensus       255 ~a~~~~~~~yp~~~~-i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~  310 (418)
                      +-|+...++=|+.-+ +-|+|...  ..++.-.-++..+.|-|.|.|++.-|.+-.+
T Consensus       223 ~IF~~L~~~~p~~~GEiqLTDAi~--~l~~~~~v~~~~~~G~r~D~G~~~gyl~A~i  277 (302)
T PRK13389        223 DIWPLLAKTPPGAGDEIQLTDAID--MLIEKETVEAYHMKGKSHDCGNKLGYMQAFV  277 (302)
T ss_pred             HHHHHHHCCCCCCCCCEEHHHHHH--HHHHHCCEEEEEEEEEEECCCCCCHHHHHHH
T ss_conf             999999607999998084999999--9984297699996557978768013799999


No 93 
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=30.51  E-value=35  Score=13.94  Aligned_cols=38  Identities=5%  Similarity=0.055  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             999999999977988113089973898999999999972
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      -+++++++|++.|++..- .-+..+.++.+.+..+.+..
T Consensus        11 t~rka~~~L~~~~i~~~~-id~~k~plt~~eL~~~l~~~   48 (111)
T cd03036          11 TCRKAKKWLDEHGVDYTA-IDIVEEPPSKEELKKWLEKS   48 (111)
T ss_pred             HHHHHHHHHHHCCCCEEE-EECCCCCCCHHHHHHHHHHH
T ss_conf             899999999985998399-96147795999999999994


No 94 
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.23  E-value=35  Score=13.91  Aligned_cols=12  Identities=17%  Similarity=0.227  Sum_probs=6.3

Q ss_pred             HHHHHCCCCCCC
Q ss_conf             999972898767
Q gi|254780455|r  218 LLAMNYKINAIG  229 (418)
Q Consensus       218 ~aa~~~gi~~~G  229 (418)
                      +.|.++|++|.=
T Consensus       156 ~la~~l~v~~~~  167 (312)
T cd05293         156 LIAERLGVAPSS  167 (312)
T ss_pred             HHHHHHCCCHHH
T ss_conf             999996989443


No 95 
>cd03586 Pol_IV_kappa Pol_IV_kappa, a member of the Y-family of DNA polymerases. Pol_Y's can transverse replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at the cost of an elevated error rate. The Y-family has no 3'-5' exonuclease activity. In addition to possessing a topology akin to a right hand, with "thumb", "fingers" and "palm" motifs, like polymerases from the A-, B-, C- and X-families, the Y-family has a unique "little finger" motif. Expression of Y-family polymerases is often induced by DNA damage. These polymerases are phylogenetically unrelated to classical DNA polymerases. Originally called the DinB family, they belong to the recently described Y-family of DNA polymerases. Pol IV is mostly found in bacteria and archaea. Although the structure of Pol IV is similar to that of Pol eta, it shows markedly differenct efficiencies and fidelities in bypassing various DNA lesions. All Pol IV-like polymerases studied to date are able to b
Probab=30.23  E-value=35  Score=13.90  Aligned_cols=30  Identities=10%  Similarity=0.161  Sum_probs=13.6

Q ss_pred             CHHHHHHHHHCCCCCCEEEECCCCEEEEEECC
Q ss_conf             98899997508998416873399269998548
Q gi|254780455|r   93 EPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGL  124 (418)
Q Consensus        93 ~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp  124 (418)
                      ...+.+.|+.+  ++.+....=.|-.+.+++.
T Consensus        79 S~~i~~il~~~--~~~ve~~SIDE~flDlt~~  108 (337)
T cd03586          79 SAQIMEILREY--TPLIEPLSIDEAYLDVTGS  108 (337)
T ss_pred             HHHHHHHHHHH--CCCEEECCCCCEEEECCCC
T ss_conf             99999999973--9846774577248974542


No 96 
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.16  E-value=35  Score=13.90  Aligned_cols=179  Identities=12%  Similarity=0.045  Sum_probs=91.8

Q ss_pred             EEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             68733992699985487786778889999998888877531348667999999999999987776742699759984244
Q gi|254780455|r  109 DLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTR  188 (418)
Q Consensus       109 ~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~R  188 (418)
                      .-.+.+|+++++++||-......|=..||++..+...+|..               .++..++    ...+.++  ..||
T Consensus        74 G~~v~~g~~i~~i~G~a~~iL~~ER~aLN~l~~lSGIAT~T---------------~~~v~~~----~~~~~~i--~~TR  132 (281)
T PRK06543         74 GERFEAGDILATVTGSARSILTAERIALNFTQRMSGIATLT---------------AAFVDAV----NGTRARI--VDTR  132 (281)
T ss_pred             CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH----CCCCCEE--EEEC
T ss_conf             98817998999997368999998999999999999999999---------------9999984----3899889--8604


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCC----CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             34797889999999984212120124788999972898----76752048987640012203678654999999999963
Q gi|254780455|r  189 RRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKIN----AIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLY  264 (418)
Q Consensus       189 R~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~----~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~y  264 (418)
                      --.+-. -....   .|...||.   .|    +++|+.    ..-  -|  +-+++...       .+-..+...+-+..
T Consensus       133 KT~PGl-R~l~k---~AV~~GGg---~n----HR~~Lsd~iLIKd--NH--i~~~~g~~-------~~~~~~i~~~r~~~  190 (281)
T PRK06543        133 KTTPGL-RIFER---YAVRCGGG---HN----HRYSLSDAVMVKD--NH--LAALAAQG-------LSLTEALRHVRAQL  190 (281)
T ss_pred             CCCCCH-HHHHH---HHHHHCCC---CC----CCCCCCCEEEEEH--HH--HHHHCCCC-------HHHHHHHHHHHHHC
T ss_conf             788654-89999---99994684---56----6788775288706--46--98854760-------78999999999758


Q ss_pred             CCCCEE-EEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             988659-863468989999989973100243412888878999999999997798811308997389899999999997
Q gi|254780455|r  265 DDNLLI-VLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH  342 (418)
Q Consensus       265 p~~~~i-~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~  342 (418)
                      |...-| .=+||..  .+   ......+.+.|-+|--+|....+ +.+..     +++ ..+-+|+|+|.+.+.+.-+.
T Consensus       191 ~~~~~IeVEv~~l~--~~---~~a~~~g~D~ImLDnms~~~i~~-av~~i-----~~~-~~lEaSGgI~~~ni~~yA~t  257 (281)
T PRK06543        191 GHTTHVEVEVDRLD--QI---EPVLAAGVDTIMLDNFTLDQLRE-GVELI-----DGR-AIVEASGNVSLNTVPAIAST  257 (281)
T ss_pred             CCCCEEEEEECCHH--HH---HHHHHCCCCEEEECCCCHHHHHH-HHHHH-----CCC-EEEEEECCCCHHHHHHHHHC
T ss_conf             99870999966788--79---99997499999977989999999-99975-----793-79999889999999999973


No 97 
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=29.84  E-value=12  Score=17.18  Aligned_cols=55  Identities=22%  Similarity=0.332  Sum_probs=28.4

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             43412888878999999999997798811-308997389899999999997248973786334643
Q gi|254780455|r  293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      -|||+|||--  ...++-..     +||. .|.|+.+.+-+ +.+..+...... . .+.||-||+
T Consensus       362 ~gvRvDt~~~--~G~~v~~~-----YDsmlaKlI~~g~~R~-~Ai~rl~~AL~e-~-~I~Gv~TN~  417 (449)
T PRK08591        362 PGVRVDSHVY--TGYTIPPY-----YDSMIGKLIVHGETRE-EAIARMKRALSE-F-VIDGIKTTI  417 (449)
T ss_pred             CCEEEECCCC--CCCEECCC-----CCCHHCEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf             9889958815--68984887-----4553203889789999-999999999736-6-997966869


No 98 
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=29.74  E-value=36  Score=13.85  Aligned_cols=75  Identities=16%  Similarity=0.136  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             89999989973100243412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r  278 TDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       278 ~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      -+.+.+.+.+.-....|+=.=+|.-..+.++.++.+++.|.+  ...++..+-+-.+....|.+.  | ..-.||=||.+
T Consensus        39 ~eeiv~~A~~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~--di~v~vGG~Ip~~d~~~l~~~--G-v~~vf~pgt~~  113 (122)
T cd02071          39 PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAG--DILVVGGGIIPPEDYELLKEM--G-VAEIFGPGTSI  113 (122)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC--CCEEEEECCCCHHHHHHHHHC--C-CCEEECCCCCH
T ss_conf             999999999739989999646554478999999999976999--846999456498999999977--9-98898958899


No 99 
>pfam05985 EutC Ethanolamine ammonia-lyase light chain (EutC). This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) EC:4.3.1.7 sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia.
Probab=29.65  E-value=36  Score=13.84  Aligned_cols=39  Identities=18%  Similarity=0.176  Sum_probs=20.7

Q ss_pred             EECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
Q ss_conf             41288887899999999999779881130899738989999
Q gi|254780455|r  295 FRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDS  335 (418)
Q Consensus       295 VR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~  335 (418)
                      -|.|.|-  .++.+.++.+++..-.+-+..||.||||.-..
T Consensus        79 ~RPDlGR--~Ls~~s~~~L~~~~~~~~Dv~iVvaDGLSa~A  117 (237)
T pfam05985        79 QRPDLGR--RLDDESLARLKAKCVKGPDVQIVIADGLSARA  117 (237)
T ss_pred             CCCCCCC--CCCHHHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf             6998878--78989999998635899988999758889899


No 100
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=29.47  E-value=36  Score=13.82  Aligned_cols=12  Identities=8%  Similarity=0.296  Sum_probs=6.2

Q ss_pred             HHHHHCCCCCCC
Q ss_conf             999972898767
Q gi|254780455|r  218 LLAMNYKINAIG  229 (418)
Q Consensus       218 ~aa~~~gi~~~G  229 (418)
                      ..|.++|++|.-
T Consensus       157 ~la~~l~v~~~~  168 (309)
T cd05294         157 AIAKHFNVHISE  168 (309)
T ss_pred             HHHHHHCCCHHH
T ss_conf             999996949667


No 101
>KOG3153 consensus
Probab=29.36  E-value=36  Score=13.81  Aligned_cols=10  Identities=10%  Similarity=0.126  Sum_probs=3.5

Q ss_pred             EEECCCCCCC
Q ss_conf             6334643146
Q gi|254780455|r  351 FGWGTNLTND  360 (418)
Q Consensus       351 fGIGT~Lt~d  360 (418)
                      .-|-..+||+
T Consensus       180 ~~v~~~~~~~  189 (250)
T KOG3153         180 LHVNLGMTGK  189 (250)
T ss_pred             ECCCCCCCCC
T ss_conf             2566654567


No 102
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN; InterPro: IPR011975    This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation  which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardized in . This enzyme is related to aldehyde dehydrogenase family. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate entry, IPR011966 from INTERPRO..
Probab=28.38  E-value=37  Score=13.69  Aligned_cols=110  Identities=13%  Similarity=-0.001  Sum_probs=55.4

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH----HHHH--CCCC-----------------------CEEEEEC-
Q ss_conf             98767520489876400122036786549999999----9996--3988-----------------------6598634-
Q gi|254780455|r  225 INAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQ----WNRL--YDDN-----------------------LLIVLPD-  274 (418)
Q Consensus       225 i~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~----~~~~--yp~~-----------------------~~i~L~D-  274 (418)
                      .-+.=|..=.|||+||+-++      |+|=.-+++    |.+.  -|+.                       -||.||= 
T Consensus       133 hAVmhTtGQAFMMAFQAGGp------HAQDRGlEAvAYAy~em~~iP~~A~W~KPQGK~DPL~l~KrF~~VPRGiaLViG  206 (560)
T TIGR02288       133 HAVMHTTGQAFMMAFQAGGP------HAQDRGLEAVAYAYREMSRIPETAVWEKPQGKRDPLKLEKRFTIVPRGIALVIG  206 (560)
T ss_pred             HHHHHCCCHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEECCCEEEEEE
T ss_conf             88841123578988764786------511323689999999963277764630775424754454553550685057761


Q ss_pred             --CCCHHHHHHH-HHHHHCC-CCEEECCCCC--HHHHHHHH-HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             --6898999998-9973100-2434128888--78999999-99999779881130899738989999999999
Q gi|254780455|r  275 --SFGTDFFLEH-APSWMTQ-WKGFRHDSAS--PIEGGEKI-IAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYK  341 (418)
Q Consensus       275 --Ty~~~~~l~~-~~~~~~~-~~GVR~DSGD--~~~~~~k~-~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~  341 (418)
                        ||=|||..-- |-.++.. ..=|..--|=  |..++.|+ |+-|-++|+||.=+.+++.+ =.++....|--
T Consensus       207 C~TFPTWNtYPGLFASLATGN~VlVKpHp~AiLP~AltV~vAreVL~EaGfDP~lV~Laa~~-p~~~~Aq~LAl  279 (560)
T TIGR02288       207 CSTFPTWNTYPGLFASLATGNPVLVKPHPGAILPLALTVQVAREVLGEAGFDPNLVALAAED-PGEEVAQRLAL  279 (560)
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCC-CCCHHHHHHHC
T ss_conf             47888756754689998638935635888620026788899999987416773020011258-88437888513


No 103
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=28.34  E-value=38  Score=13.69  Aligned_cols=107  Identities=11%  Similarity=0.112  Sum_probs=51.6

Q ss_pred             EECCCCHHHHHHHHHHHHCCCCEEECCCCCHH----HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             63468989999989973100243412888878----99999999999779881130899738989999999999724897
Q gi|254780455|r  272 LPDSFGTDFFLEHAPSWMTQWKGFRHDSASPI----EGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRV  347 (418)
Q Consensus       272 L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~----~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~  347 (418)
                      |.+.++.+.|.+.+...-...+.+=+|-.-.+    .++.+   .|=.+||+|..+    .++|+++.+..|++....-.
T Consensus       148 l~~~~~~~~~~~~l~~~~~~IK~~LlDQ~~iaGIGNiyadE---iLf~a~I~P~~~----~~~Ls~~e~~~L~~~i~~vL  220 (283)
T PRK13945        148 FSPEFNVEYLKKKLKGRTRSIKTALLDQSIVAGIGNIYADE---SLFKAGIRPTTE----AGTLKKNQLERLREAIVEVL  220 (283)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCEEEECCCEECCCCHHHHHH---HHHHCCCCCCCC----CCCCCHHHHHHHHHHHHHHH
T ss_conf             12326899999887526754351775188523454999999---999859997786----03089999999999999999


Q ss_pred             EEEEEE-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEE
Q ss_conf             378633-4643146566666655677732168985757681116
Q gi|254780455|r  348 QMIFGW-GTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAV  390 (418)
Q Consensus       348 ~~~fGI-GT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~  390 (418)
                      ..+..- ||.+ .|+....+..+.-+..+ -||.   -+|+||-
T Consensus       221 ~~ai~~ggtt~-~d~~~~~g~~g~~~~~~-~Vy~---r~g~~C~  259 (283)
T PRK13945        221 KTSIGAGGTTF-SDFRDLEGVNGNYGGQA-WVYR---RTGQPCR  259 (283)
T ss_pred             HHHHHCCCCCC-CCCCCCCCCCCCCCCEE-EEEC---CCCCCCC
T ss_conf             99998489845-01347778768877538-8967---8989489


No 104
>pfam02785 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=28.09  E-value=2.4  Score=21.86  Aligned_cols=56  Identities=23%  Similarity=0.386  Sum_probs=26.4

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             43412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r  293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      .|||+|||-  +-..++-..||.+-    .|.|+.+.+-. +.+.++.....+-  ...||-||+
T Consensus        29 ~gvRvDt~v--~~G~~v~~~YDsml----AKvI~~g~~R~-~Ai~kl~~aL~~~--~I~Gv~TN~   84 (107)
T pfam02785        29 PGVRVDSGV--YEGDEVSPYYDSMI----AKLIVHGPDRE-EAIARLRRALAET--RIEGVKTNI   84 (107)
T ss_pred             CCEEEECCE--ECCCCCCCCCCHHH----HHHHHCCCCHH-HHHHHHHHHHHHH--EECCCCCCH
T ss_conf             998987485--15983584403699----99997089999-9999999999976--506856449


No 105
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=28.05  E-value=38  Score=13.66  Aligned_cols=12  Identities=25%  Similarity=0.385  Sum_probs=6.6

Q ss_pred             HHHHHCCCCCCC
Q ss_conf             999972898767
Q gi|254780455|r  218 LLAMNYKINAIG  229 (418)
Q Consensus       218 ~aa~~~gi~~~G  229 (418)
                      ..|.++|++|.-
T Consensus       151 ~la~~l~v~~~~  162 (300)
T cd00300         151 LLAEKLDVDPQS  162 (300)
T ss_pred             HHHHHHCCCCCC
T ss_conf             998761989000


No 106
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233   This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=27.08  E-value=36  Score=13.81  Aligned_cols=12  Identities=42%  Similarity=0.814  Sum_probs=7.3

Q ss_pred             CCCEEEEECCCC
Q ss_conf             997599842443
Q gi|254780455|r  178 SGLKIVDFGTRR  189 (418)
Q Consensus       178 ~~~~l~eFG~RR  189 (418)
                      +|.+|+|-|+=.
T Consensus        84 ~G~~vLDVGCGG   95 (275)
T TIGR01983        84 SGLRVLDVGCGG   95 (275)
T ss_pred             CCCEEEEECCCH
T ss_conf             897799842785


No 107
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=27.04  E-value=39  Score=13.54  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHC----CCC--CEEEEECCCCHH
Q ss_conf             99999999963----988--659863468989
Q gi|254780455|r  254 YQMMQQWNRLY----DDN--LLIVLPDSFGTD  279 (418)
Q Consensus       254 ~~a~~~~~~~y----p~~--~~i~L~DTy~~~  279 (418)
                      .+.|++.+...    |++  +.++|+.-||+.
T Consensus         8 ~~~f~~ivRI~gtdi~g~K~v~~aLt~I~GIG   39 (154)
T PTZ00134          8 SDQFQHILRILNTNVDGREKVTIALTAIKGIG   39 (154)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCC
T ss_conf             78833515403875899958899853220648


No 108
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.79  E-value=40  Score=13.51  Aligned_cols=10  Identities=20%  Similarity=0.571  Sum_probs=5.5

Q ss_pred             HHHHHCCCCC
Q ss_conf             9999728987
Q gi|254780455|r  218 LLAMNYKINA  227 (418)
Q Consensus       218 ~aa~~~gi~~  227 (418)
                      .+|.+++++|
T Consensus       155 ~la~~l~v~~  164 (307)
T cd05290         155 IVADKYGVDP  164 (307)
T ss_pred             HHHHHHCCCC
T ss_conf             9999849993


No 109
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.68  E-value=40  Score=13.49  Aligned_cols=75  Identities=12%  Similarity=-0.045  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC------CHHHHHHHHHHHCCCCEEEE
Q ss_conf             899999899731002434128888789999999999977988113089973898------99999999997248973786
Q gi|254780455|r  278 TDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNL------DVDSIIYTYKHFENRVQMIF  351 (418)
Q Consensus       278 ~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~L------d~e~i~~l~~~~~~~~~~~f  351 (418)
                      -+.|.+.+.+.-+...|+=.=||--..+.++.++.+++.|..  .+.++..+.+      -++....|.+   ....-.|
T Consensus        43 pe~~v~~A~~~~ad~igiSsl~G~~~~~~~~l~~~l~~~g~~--di~vvvGG~i~i~~~dp~~~~~~L~~---~Gv~~VF  117 (137)
T PRK02261         43 QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLG--DILLYVGGNLVVGKHDFEEVEKKFKE---MGFDRVF  117 (137)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCHHHHHHHHH---CCCCEEE
T ss_conf             999999998739999997111126612799999999967999--99699836216788783999999997---7979887


Q ss_pred             EECCCC
Q ss_conf             334643
Q gi|254780455|r  352 GWGTNL  357 (418)
Q Consensus       352 GIGT~L  357 (418)
                      |-||.+
T Consensus       118 ~pGT~~  123 (137)
T PRK02261        118 APGTDL  123 (137)
T ss_pred             CCCCCH
T ss_conf             978899


No 110
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=26.57  E-value=40  Score=13.48  Aligned_cols=16  Identities=25%  Similarity=0.426  Sum_probs=8.2

Q ss_pred             HHHHHHHHCCCCEEEE
Q ss_conf             9999998489965999
Q gi|254780455|r   25 MLQLIWKFYPDIKVTF   40 (418)
Q Consensus        25 M~~a~~~~~~~~~v~f   40 (418)
                      |...+-...|+.-++|
T Consensus        34 ~r~~l~~~~PDvvVv~   49 (313)
T PRK13370         34 ARERVAAFDPELVVLF   49 (313)
T ss_pred             HHHHHHHHCCCEEEEE
T ss_conf             9999998299989998


No 111
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=26.45  E-value=40  Score=13.47  Aligned_cols=37  Identities=16%  Similarity=0.307  Sum_probs=31.4

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH
Q ss_conf             34128888789999999999977988113089973898999
Q gi|254780455|r  294 GFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVD  334 (418)
Q Consensus       294 GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e  334 (418)
                      -||.+-|-|..-..+..+.|.+.|++    ..|+|||+.++
T Consensus       323 ~i~~g~g~ly~~v~~~~~~l~~~~~~----~~iasng~~~y  359 (459)
T PRK06698        323 NIKSGKGALYPNVKEIFTYIKENNCS----IYIASNGLTEY  359 (459)
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCC----EEEECCCHHHH
T ss_conf             98658986464799999999974996----79964856999


No 112
>pfam09822 ABC_transp_aux ABC-type uncharacterized transport system. This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=26.34  E-value=41  Score=13.45  Aligned_cols=48  Identities=15%  Similarity=0.236  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCHH--HH-------HHHHHHHHCCCCEEECCCC
Q ss_conf             654999999999963988659863468989--99-------9989973100243412888
Q gi|254780455|r  250 QNAPYQMMQQWNRLYDDNLLIVLPDSFGTD--FF-------LEHAPSWMTQWKGFRHDSA  300 (418)
Q Consensus       250 ~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~--~~-------l~~~~~~~~~~~GVR~DSG  300 (418)
                      -+.+..+++.|+.  .|+..+.+.|.+...  ..       ..++..++..| |||++++
T Consensus       206 s~~e~~~ldqyl~--~GG~ll~~~dp~~~~~~~~~~~~~~~~~~L~~lL~~~-Gi~~~~~  262 (266)
T pfam09822       206 SEQELYALDQYLM--RGGKLLVFLDPVSVDLDSLLATGGKRDSGLEDLLESY-GVRLNPG  262 (266)
T ss_pred             CHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH-CCCCCCC
T ss_conf             9999999999998--6995999977765554321134676679859999980-9630788


No 113
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=26.33  E-value=41  Score=13.45  Aligned_cols=13  Identities=23%  Similarity=0.279  Sum_probs=6.6

Q ss_pred             CCCC--CCCCCHHHH
Q ss_conf             8987--675204898
Q gi|254780455|r  224 KINA--IGTSAHELP  236 (418)
Q Consensus       224 gi~~--~GTmaHs~v  236 (418)
                      |+|.  ..++-|||.
T Consensus       121 gl~~~~~~~ryHS~~  135 (221)
T PRK07765        121 GLPDPFTATRYHSLT  135 (221)
T ss_pred             CCCCCEEEEEEEEEE
T ss_conf             899974788742189


No 114
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.94  E-value=41  Score=13.41  Aligned_cols=14  Identities=21%  Similarity=0.005  Sum_probs=8.4

Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             47889999728987
Q gi|254780455|r  214 TSNALLAMNYKINA  227 (418)
Q Consensus       214 TSNv~aa~~~gi~~  227 (418)
                      ||-.-++-..|+|.
T Consensus       118 sa~~Aaaa~~GiPL  131 (253)
T PRK06136        118 TAAIAAAAAAGIPL  131 (253)
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             59999999839885


No 115
>pfam03445 DUF294 Putative nucleotidyltransferase DUF294. This domain is found associated with pfam00571. This region is uncharacterized, however it seems to be similar to pfam01909, conserving the DXD motif. This strongly suggests that members of this family are also nucleotidyltransferases (Bateman A pers. obs.).
Probab=25.68  E-value=42  Score=13.37  Aligned_cols=13  Identities=15%  Similarity=0.245  Sum_probs=6.0

Q ss_pred             CCEEEEECCCCCC
Q ss_conf             9759984244347
Q gi|254780455|r  179 GLKIVDFGTRRRH  191 (418)
Q Consensus       179 ~~~l~eFG~RR~~  191 (418)
                      ++-++-||+=.|.
T Consensus        49 ~~a~l~mGS~GR~   61 (168)
T pfam03445        49 PFAWLVMGSEGRG   61 (168)
T ss_pred             CEEEEEECCCCCC
T ss_conf             9788865566456


No 116
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810    An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,.  10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate     Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=25.32  E-value=25  Score=14.93  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             HHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC------CCCH
Q ss_conf             4212120124788999972898767520489876400122036786549999999999639886598634------6898
Q gi|254780455|r  205 EGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPD------SFGT  278 (418)
Q Consensus       205 aa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~D------Ty~~  278 (418)
                      -+++..|.|--=..=|+.-|.+.||..||     |-+.          +   +       |.++ |.-=|      ||+.
T Consensus       204 HSFLPAFiGA~PY~rA~eRGVKiIGATAH-----YVt~----------~---L-------DeGP-IIeQDv~rVdH~~~~  257 (294)
T TIGR00655       204 HSFLPAFIGANPYQRAYERGVKIIGATAH-----YVTE----------E---L-------DEGP-IIEQDVVRVDHTDNV  257 (294)
T ss_pred             CCCCCCCCCCCCHHHHHCCCCEEEECCEE-----EECC----------C---C-------CCCC-CEEECCEEECCCCCH
T ss_conf             35245544676237887088337702001-----0033----------5---7-------8889-025330452766777


Q ss_pred             HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             9999989973100243412888878999999999997798811308997
Q gi|254780455|r  279 DFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVF  327 (418)
Q Consensus       279 ~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~  327 (418)
                      +.+.+.-...-.            .-||+-+.++|.+.=+=..+|+|||
T Consensus       258 e~l~r~GrDiEk------------~VLaRAv~~hL~dRv~Vy~NkTvVF  294 (294)
T TIGR00655       258 EDLIRAGRDIEK------------VVLARAVKLHLEDRVLVYENKTVVF  294 (294)
T ss_pred             HHHHHCCCCHHH------------HHHHHHHHHHHCCCEEEECCEEEEC
T ss_conf             899860675126------------7899999998328178877835749


No 117
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=24.53  E-value=26  Score=14.76  Aligned_cols=94  Identities=12%  Similarity=0.188  Sum_probs=39.2

Q ss_pred             CCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf             56567100124401178999999999848996599999965887554400002369999999971699989999998377
Q gi|254780455|r    5 FSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENS   84 (418)
Q Consensus         5 ~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~   84 (418)
                      +..+-|||.|-.||=- +-.|+-+.-+++=     --+..|+.+           +++|.+.++..+=.  |--+.. ..
T Consensus        38 i~L~iPivSS~MDTVT-e~~MAiamA~~GG-----lGVIHrn~s-----------ie~Q~~~V~~VKr~--e~g~i~-~P   97 (486)
T PRK05567         38 IRLNIPLLSAAMDTVT-EARLAIAMAQEGG-----IGVIHKNMS-----------IEEQAEEVRKVKRS--ESGVVT-DP   97 (486)
T ss_pred             CCCCCCEEECCCCCCC-CHHHHHHHHHCCC-----EEEECCCCC-----------HHHHHHHHHHHHHH--HCCCCC-CC
T ss_conf             1328877867876657-8999999998898-----799989999-----------99999999999753--067137-98


Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEE
Q ss_conf             7555557898899997508998416873399269
Q gi|254780455|r   85 FYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYV  118 (418)
Q Consensus        85 ~~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~  118 (418)
                      ...+...--.+-++....+++++..+...+|.++
T Consensus        98 ~tl~P~~tv~d~~~l~~~~~~sg~PVv~~~~kL~  131 (486)
T PRK05567         98 VTVTPDTTLAEALALMARYGISGVPVVDEEGKLV  131 (486)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEE
T ss_conf             6768988899999999972878614876799478


No 118
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=24.36  E-value=44  Score=13.21  Aligned_cols=64  Identities=8%  Similarity=0.083  Sum_probs=34.5

Q ss_pred             CCEEECCCCCHHHHHHHH-HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC--CCC-EEEEEECCCC
Q ss_conf             243412888878999999-99999779881130899738989999999999724--897-3786334643
Q gi|254780455|r  292 WKGFRHDSASPIEGGEKI-IAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE--NRV-QMIFGWGTNL  357 (418)
Q Consensus       292 ~~GVR~DSGD~~~~~~k~-~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~--~~~-~~~fGIGT~L  357 (418)
                      |.|+..|+.+  ....-+ ...++..++++......-++..|+..+.+..+...  |.+ ...-|||.+=
T Consensus        69 y~glp~~~~~--S~~~~l~~~l~~~v~i~~~~~~~~~~~~~~e~ec~~~~~~I~~~ggiDl~lLGiG~nG  136 (236)
T PRK09762         69 WVDLPLTMPG--TCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNG  136 (236)
T ss_pred             ECCCCCCCCH--HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             5488898604--2899999972454699799876999886559999999999986089768995257786


No 119
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase; InterPro: IPR005960    This entry represents the small, monomeric form of phenylalanine-4-hydroxylase (PAH; 1.14.16.1 from EC), as found in a certain Gram-negative bacteria. The enzyme is biopterin and metal dependent, and acts to irreversibly convert phenylalanine to tyrosine, the rate-limiting step in phenylalanine catabolism in some systems:    L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + dihydrobiopterin + H2O     The structure of PAH from Colwellia psychrerythraea (strain 34H / ATCC BAA-681), which binds tetrahydrobiopterin (BH4) as cofactor, is a cold-active form of the enzyme that has increased stability and flexibility around the active site .   More information about these proteins can be found at Protein of the Month: Phenylalanine Hydroxylase .; GO: 0004505 phenylalanine 4-monooxygenase activity, 0006559 L-phenylalanine catabolic process.
Probab=24.08  E-value=44  Score=13.20  Aligned_cols=20  Identities=15%  Similarity=0.263  Sum_probs=14.2

Q ss_pred             CCCHHHHHHHHHCCCCCCEE
Q ss_conf             78988999975089984168
Q gi|254780455|r   91 LFEPKFLSWLSDFQLPEYDL  110 (418)
Q Consensus        91 ~~~~~fl~~L~~~~f~~~~~  110 (418)
                      +....|+|.|.+-|||.-.+
T Consensus        77 IP~~~FFehLAnrrFPVt~w   96 (251)
T TIGR01267        77 IPADVFFEHLANRRFPVTTW   96 (251)
T ss_pred             CCCHHHHHHHHCCCCCCCCC
T ss_conf             88504568763478864221


No 120
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=23.89  E-value=35  Score=13.89  Aligned_cols=36  Identities=19%  Similarity=0.111  Sum_probs=18.0

Q ss_pred             CCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf             656710012440117899999999984899659999996588
Q gi|254780455|r    6 STSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQT   47 (418)
Q Consensus         6 ~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~   47 (418)
                      ..+=|||.|-.||=- +-.|+-+.=+++=     --+..|+.
T Consensus        47 ~L~iPivSs~MDTVT-e~~MAiamA~~GG-----iGVIHrn~   82 (499)
T PTZ00314         47 RLHIPIVSSPMDTVT-EHKMAIAMALMGG-----IGVIHNNC   82 (499)
T ss_pred             EECCCEEECCCCCCC-CHHHHHHHHHCCC-----EEEECCCC
T ss_conf             207877967887656-8999999997798-----69987999


No 121
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=23.69  E-value=45  Score=13.13  Aligned_cols=13  Identities=15%  Similarity=0.312  Sum_probs=6.6

Q ss_pred             HHHHHCCCCCCCC
Q ss_conf             9999728987675
Q gi|254780455|r  218 LLAMNYKINAIGT  230 (418)
Q Consensus       218 ~aa~~~gi~~~GT  230 (418)
                      ..|.+++++|.--
T Consensus       158 ~la~~l~v~~~~V  170 (315)
T PRK00066        158 MLAEKLDVDPRSV  170 (315)
T ss_pred             HHHHHHCCCCCCC
T ss_conf             9999849993031


No 122
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=23.63  E-value=20  Score=15.63  Aligned_cols=56  Identities=25%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             43412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r  293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      .|||+|||-  +...++-..||.+-    .|.|+.+.+-+ +.+..+...... . ..-||-|++
T Consensus       363 ~gvRvD~~v--~~G~~v~~~yDsml----aKli~~g~~R~-~Ai~r~~rAL~e-~-~I~Gv~Tni  418 (497)
T PRK08654        363 PGVRVDSGV--HMGYTIPPYYDSMI----SKLIVWGRTRE-EAIARMKRALYE-Y-IILGVKTNI  418 (497)
T ss_pred             CCEEEECCC--CCCCCCCCCCCCHH----CEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf             988996456--46897388654333----03679889999-999999999854-6-998954879


No 123
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=23.59  E-value=46  Score=13.11  Aligned_cols=71  Identities=10%  Similarity=-0.080  Sum_probs=45.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCC---EEECC--CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             865986346898999998997310024---34128--8887899999999999779881130899738989999999999
Q gi|254780455|r  267 NLLIVLPDSFGTDFFLEHAPSWMTQWK---GFRHD--SASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYK  341 (418)
Q Consensus       267 ~~~i~L~DTy~~~~~l~~~~~~~~~~~---GVR~D--SGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~  341 (418)
                      +..+..+=.|+..+.+-.+. .++.|.   -=|+|  .+|+.....++++.++..|.  .+|.+++|= =+.+.+.++.+
T Consensus       103 gi~vn~Tavys~~Qa~~Aa~-aGA~YvsPyvGR~~d~G~Dg~~~i~~i~~~~~~~~~--~tkILaASi-R~~~~v~~a~~  178 (220)
T PRK12655        103 GIPTLGTAVYSAAQGLLAAL-AGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAP--ESMVLAASF-KTPRQALDCLL  178 (220)
T ss_pred             CCCEEEEECCCHHHHHHHHH-CCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHCCC--CCEEEEEEC-CCHHHHHHHHH
T ss_conf             99789985178999999998-599789632105755589848999999999997599--968999838-99999999998


No 124
>KOG1710 consensus
Probab=23.34  E-value=46  Score=13.08  Aligned_cols=53  Identities=8%  Similarity=0.105  Sum_probs=42.7

Q ss_pred             CCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             400002369999999971699989999998377755555789889999750899
Q gi|254780455|r   52 SDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQL  105 (418)
Q Consensus        52 ~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f  105 (418)
                      ...+.|-|-++++.-++| .||.+-++|+.+...+.+.|-.+|...-++..+--
T Consensus       116 aqmAAFVG~H~CV~iINN-~~t~~~leyyt~p~g~~~ep~~Pp~La~~~H~~~t  168 (396)
T KOG1710         116 AQMAAFVGHHECVAIINN-HITIDVLEYYTRPKGYEGEPEYPPELAVFIHSLCT  168 (396)
T ss_pred             HHHHHHHCCHHHHHHHHC-CCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             999998551179999964-36188998750543457898898799899999871


No 125
>TIGR00875 talC transaldolase, putative; InterPro: IPR004731   Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated  in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.   Transaldolase is evolutionary related  to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process.
Probab=23.17  E-value=46  Score=13.06  Aligned_cols=42  Identities=10%  Similarity=0.065  Sum_probs=25.7

Q ss_pred             EECC--CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             4128--88878999999999997798811308997389899999999
Q gi|254780455|r  295 FRHD--SASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYT  339 (418)
Q Consensus       295 VR~D--SGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l  339 (418)
                      =|+|  |||=..+.+++.+.|+-.+++  +..|++|= =.+..+++-
T Consensus       134 gRlDdigg~G~~li~e~~~i~~~h~~~--t~vi~AS~-rhP~hvle~  177 (216)
T TIGR00875       134 GRLDDIGGDGLKLIEEVKTIFENHALD--TEVIAASV-RHPRHVLEA  177 (216)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCC--CEEEEEEC-CCHHHHHHH
T ss_conf             101312775057899999999730876--42665402-371789999


No 126
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=22.46  E-value=48  Score=12.97  Aligned_cols=75  Identities=16%  Similarity=0.151  Sum_probs=37.9

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-EEEEECCCCCCCCCH
Q ss_conf             9973898999999999972489737863346431465666666556777321689857576811-167326887524888
Q gi|254780455|r  325 LVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKH-AVKLSDDPAKTTGDI  403 (418)
Q Consensus       325 iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P-~~KlSd~~~K~tg~~  403 (418)
                      ++-++.+.++....|.+  .|+.-+++|-  .+  |-.|-...+......+|  .+|-+..-.| +|=+.-.+.|+    
T Consensus       224 ~~~~g~~~~~~~~~l~~--~gaVGdi~g~--ff--D~~G~~~~~~ln~r~ig--l~L~~l~~ip~vI~vAgG~~K~----  291 (321)
T COG2390         224 LVRSGFIYEEELEALLA--KGAVGDILGR--FF--DANGQPVDTPLNDRVIG--LSLDDLRQIPKVIAVAGGESKA----  291 (321)
T ss_pred             HHHHCCCCHHHHHHHHH--CCCCEECCCC--EE--CCCCCCCCCCCCCCEEC--CCHHHHHCCCCEEEEECCCCCH----
T ss_conf             34426978899999996--7930003066--23--27998855556571643--7788973278389995786028----


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780455|r  404 SEIKRYLK  411 (418)
Q Consensus       404 ~~~~~~~~  411 (418)
                      +.++.++|
T Consensus       292 ~AI~aaL~  299 (321)
T COG2390         292 EAILAALR  299 (321)
T ss_pred             HHHHHHHH
T ss_conf             99999984


No 127
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=22.36  E-value=48  Score=12.95  Aligned_cols=21  Identities=10%  Similarity=-0.069  Sum_probs=8.9

Q ss_pred             HHHHHHCCCCCCEEEECCCCE
Q ss_conf             999750899841687339926
Q gi|254780455|r   97 LSWLSDFQLPEYDLSHKKGQY  117 (418)
Q Consensus        97 l~~L~~~~f~~~~~~~~eg~~  117 (418)
                      ++.+..++.++.+++--+|.|
T Consensus        36 ~~~i~~~~pd~IiLSpGPg~p   56 (195)
T PRK07649         36 ISDIENMKPDFLMISPGPCSP   56 (195)
T ss_pred             HHHHHHCCCCEEEECCCCCCH
T ss_conf             999984198989988999995


No 128
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=22.14  E-value=40  Score=13.52  Aligned_cols=46  Identities=13%  Similarity=0.139  Sum_probs=33.7

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             9999999971699989999998377755555789889999750899
Q gi|254780455|r   60 LRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQL  105 (418)
Q Consensus        60 L~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f  105 (418)
                      -++.|.++..-.+|.|+.+.|.+.....-+....|.|++|.+.+.-
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~   52 (442)
T TIGR03372         7 SAHALHLIEKDTLDHDDMAALNQEVIECFKEHVNPGFLEYRKSVTA   52 (442)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf             7998636421668978887889999999983689461256655304


No 129
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.95  E-value=49  Score=12.90  Aligned_cols=31  Identities=13%  Similarity=0.229  Sum_probs=22.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             08997389899999999997248973786334643
Q gi|254780455|r  323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       323 k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      ..++.++|++.+-+.+-++   ... ..+|||..|
T Consensus       156 ~~~~ptGGV~~~N~~~~l~---aG~-~~vgvGs~l  186 (209)
T PRK06552        156 VNIMVTGGVSLDNVKDWFA---AGA-DAVGIGGEL  186 (209)
T ss_pred             CCEEECCCCCHHHHHHHHH---CCC-CEEEECHHH
T ss_conf             9288638999888999998---799-889986577


No 130
>PRK05586 biotin carboxylase; Validated
Probab=21.75  E-value=23  Score=15.18  Aligned_cols=56  Identities=27%  Similarity=0.409  Sum_probs=28.8

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             43412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r  293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      .|||+|||--  -..++-..||.+-    .|.|+.+.+-+ +.+..+...... . ...||-||+
T Consensus       364 ~gvRvDt~~~--~G~~v~~~yDsll----aK~I~~g~~R~-~Ai~rl~~aL~~-~-~i~Gv~Tni  419 (447)
T PRK05586        364 LGVRLDSAIY--SGYTIPPYYDSMI----GKLIVYGKDRE-EAIQKMKRALGE-F-IIEGVKTNI  419 (447)
T ss_pred             CCEEEECCCC--CCCCCCCCCCCHH----CEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf             9889878745--8796488646223----24779889999-999999999843-7-997934879


No 131
>PRK05282 peptidase E; Validated
Probab=21.73  E-value=49  Score=12.87  Aligned_cols=18  Identities=28%  Similarity=0.383  Sum_probs=7.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCEE
Q ss_conf             146566666655677732168
Q gi|254780455|r  358 TNDFDGCTPYQNLQTEKLQIV  378 (418)
Q Consensus       358 t~d~~~~~~~~~~~~~~l~~V  378 (418)
                      |||++=+.|   .+-++||.|
T Consensus       133 TNDMPIv~p---psf~aLglv  150 (233)
T PRK05282        133 TNDMPIVDP---PSFDALNLF  150 (233)
T ss_pred             CCCCCCCCC---CCCCCCCCE
T ss_conf             689874379---886632652


No 132
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=21.69  E-value=49  Score=12.86  Aligned_cols=30  Identities=20%  Similarity=0.139  Sum_probs=21.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             888789999999999977988113089973898
Q gi|254780455|r  299 SASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNL  331 (418)
Q Consensus       299 SGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~L  331 (418)
                      ++||  +++++|++|++.|+. .....|||+..
T Consensus       154 ~~dp--La~~vR~~Lrk~~~~-~gv~vVyS~E~  183 (231)
T cd00755         154 SGDP--LARKVRKRLRKRGIF-FGVPVVYSTEP  183 (231)
T ss_pred             CCCC--HHHHHHHHHHHCCCC-CCEEEEECCCC
T ss_conf             5761--699999999970686-87589974788


No 133
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=21.64  E-value=50  Score=12.86  Aligned_cols=48  Identities=17%  Similarity=0.247  Sum_probs=29.3

Q ss_pred             EHHHHH-HHHHHC--CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf             124788-999972--8987675204898764001220367865499999999996398865986346898
Q gi|254780455|r  212 LGTSNA-LLAMNY--KINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT  278 (418)
Q Consensus       212 ~GTSNv-~aa~~~--gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~  278 (418)
                      +-+.+. ..-...  ...++||.|++                  ++.-+..|.+.|++..-+.| |+-+.
T Consensus        84 IRs~~~v~~ll~~G~~rViiGt~av~------------------~p~~v~~~~~~~g~rivv~l-D~r~g  134 (241)
T COG0106          84 IRSLEDVEALLDAGVARVIIGTAAVK------------------NPDLVKELCEEYGDRIVVAL-DARDG  134 (241)
T ss_pred             CCCHHHHHHHHHCCCCEEEEECCEEC------------------CHHHHHHHHHHCCCCEEEEE-ECCCC
T ss_conf             67899999999879988998031216------------------99999999998598289999-71488


No 134
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=21.46  E-value=23  Score=15.16  Aligned_cols=55  Identities=16%  Similarity=0.096  Sum_probs=29.8

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             43412888878999999999997798811-308997389899999999997248973786334643
Q gi|254780455|r  293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      .|||+|||--.  ..++-..     +||. .|.|+...+ -++.+..+...... . .+-||-||+
T Consensus       364 ~gvRvDs~~~~--G~~v~~~-----yDsmiaKlI~~g~~-R~~Ai~rl~~AL~e-~-~I~Gv~Tni  419 (478)
T PRK08463        364 PSVRVDSHIYK--DYTIPPF-----YDSMLAKLIVKATS-YDLAVNKLERALKE-F-TIEGVRTTI  419 (478)
T ss_pred             CCEEEECCCCC--CCCCCCC-----CCHHHCEEEEECCC-HHHHHHHHHHHHHC-C-EEECCCCCH
T ss_conf             99898088678--6980897-----57045348898899-99999999999726-6-998955859


No 135
>pfam09024 consensus
Probab=21.20  E-value=40  Score=13.49  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=38.1

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCC--CCHH
Q ss_conf             73898999999999972489737863346431465666666556777321689857576811167326887524--8889
Q gi|254780455|r  327 FSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT--GDIS  404 (418)
Q Consensus       327 ~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~t--g~~~  404 (418)
                      -|+.+..+.+.+--+-.+.--...-|+.+.|++--     +   ...-.++ -.|+-..|...||.++..|+.|  |.++
T Consensus        30 ~s~~~~~~~l~~s~qvlKsvfVp~VGwAsQL~sG~-----V---wVQfnDG-SQl~vqagvs~I~Yt~~~G~~trYgend  100 (123)
T pfam09024        30 SSNSHKDDCLPKSAKLLKSIFVKNIGWASQLTSGA-----V---WVQFNDG-SQLMVQAGVSCIIFTSPEGHITRYGENE  100 (123)
T ss_pred             CCCCCCCCCCCCHHEEEEEEECCCCEEEEECCCCC-----E---EEEECCC-CEEEEECCCCEEEEECCCCCEEECCCCC
T ss_conf             88645323264222014468517842787516854-----8---9997688-6899954863599988999747747545


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780455|r  405 EIKRYLK  411 (418)
Q Consensus       405 ~~~~~~~  411 (418)
                      .+..+.|
T Consensus       101 ~LPe~Ik  107 (123)
T pfam09024       101 KLPDLIK  107 (123)
T ss_pred             CCCHHHH
T ss_conf             5519999


No 136
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=21.16  E-value=24  Score=15.07  Aligned_cols=56  Identities=20%  Similarity=0.280  Sum_probs=27.3

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             43412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r  293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      .|||+|||--.  ..++-..||.+    -.|.|+...+-+ +.+..+...... . ...||-||+
T Consensus       367 ~gvRvDt~v~~--G~~v~~~yDsl----laKlI~~g~~R~-~Ai~rl~~aL~e-~-~I~Gv~TNi  422 (458)
T PRK12833        367 PGVRVDSLLYP--GYAVPPFYDSL----LAKLIVHDESRA-AALARAARALEE-L-RIDGMKTTA  422 (458)
T ss_pred             CCEEEECCCCC--CCCCCCCCCCH----HHEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf             98888887027--79748875504----300368889999-999999999844-7-998933879


No 137
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.11  E-value=51  Score=12.79  Aligned_cols=35  Identities=14%  Similarity=0.192  Sum_probs=26.0

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             113089973898999999999972489737863346431
Q gi|254780455|r  320 PQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLT  358 (418)
Q Consensus       320 p~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt  358 (418)
                      |....++.++|++.+-+.+-.+.  |.  ..+|+|.+|+
T Consensus       149 P~~~~~~ptGGV~~~N~~~~l~a--Ga--~avG~Gs~L~  183 (206)
T PRK09140        149 PPDVPVFAVGGVTPENLAPYLAA--GA--AGFGLGSALY  183 (206)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHC--CC--CEEEECHHCC
T ss_conf             99998995379888889999986--99--1999606515


No 138
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=20.96  E-value=51  Score=12.76  Aligned_cols=38  Identities=11%  Similarity=0.110  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             999999999977988113089973898999999999972
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      -+++++++|++.|++..- .-+..+.++.+.+.++.+..
T Consensus        12 t~rkA~~~L~~~~i~~~~-~d~~k~~~s~~el~~~l~~~   49 (115)
T cd03032          12 SCRKAKQWLEEHQIPFEE-RNLFKQPLTKEELKEILSLT   49 (115)
T ss_pred             HHHHHHHHHHHCCCCEEE-EEEECCCCCHHHHHHHHHHC
T ss_conf             999999999986997189-97425896999999999983


No 139
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.90  E-value=51  Score=12.76  Aligned_cols=263  Identities=15%  Similarity=0.097  Sum_probs=125.9

Q ss_pred             CCCHHHHCCHHHHH--HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf             10012440117899--9999999848996599999965887554400002369999999971699989999998377755
Q gi|254780455|r   10 PIISSLLDTDFYKI--LMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYG   87 (418)
Q Consensus        10 piI~SlLdTD~Ykl--tM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~   87 (418)
                      |.+...|.-|.+.-  | .+|.+  -++.+++-.++.|..       .|++|+...-..++.+-   .+++.        
T Consensus         8 ~~v~~~L~ED~g~gDiT-t~al~--~~~~~a~a~i~ake~-------GvvaG~~~a~~~f~~l~---~~i~~--------   66 (280)
T COG0157           8 DLVDAALLEDLGRGDIT-TEALI--PEDRKAEAVIIAKEA-------GVVAGLDVAEEVFELLG---PSIEI--------   66 (280)
T ss_pred             HHHHHHHHHHCCCCCCC-CCCCC--CCCCEEEEEEEECCC-------CEEECHHHHHHHHHHHC---CCEEE--------
T ss_conf             99999998656787764-52125--789747999997379-------68876799999999809---76689--------


Q ss_pred             CCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             55578988999975089984168733992699985487786778889999998888877531348667999999999999
Q gi|254780455|r   88 KKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKL  167 (418)
Q Consensus        88 ~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (418)
                                     ...-.+.-.+.+|+.+++++||-.....-|=..||++..+...+|               ..+++
T Consensus        67 ---------------~~~~~DG~~v~~g~~i~~~~G~a~~lL~~ER~aLN~L~~lSGIAT---------------~T~~~  116 (280)
T COG0157          67 ---------------QWLVKDGDRVKPGDVLAEIEGPARALLTAERTALNFLQHLSGIAT---------------ATARM  116 (280)
T ss_pred             ---------------EEECCCCCEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_conf             ---------------887288888079978999956588899999999999999837999---------------99999


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CC-EE---HHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf             98777674269975998424434797889999999984212-12-01---247889999728987675204898764001
Q gi|254780455|r  168 WSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIK-DS-FL---GTSNALLAMNYKINAIGTSAHELPMVAAAI  242 (418)
Q Consensus       168 ~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~-~g-f~---GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~  242 (418)
                      .++....    +-++  ..||--.+-.  . .+  -++|.. || ..   |-|...+=+.=.|...|    +|-.     
T Consensus       117 V~~~~~~----~~~i--~~TRKT~Pgl--R-~l--eKyAV~~GGG~nHR~gLsDavliKDNHia~~g----~i~~-----  176 (280)
T COG0157         117 VEALRGT----NVRI--ADTRKTTPGL--R-LL--EKYAVRAGGGDNHRFGLSDAVLIKDNHIAAAG----SITE-----  176 (280)
T ss_pred             HHHHHCC----CCEE--EECCCCCCCH--H-HH--HHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHC----CHHH-----
T ss_conf             9983246----9689--8616789657--8-99--99999964974213777525776044788753----5999-----


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCHHHHHHHH-HHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             220367865499999999996398865-9863468989999989-97310024341288887899999999999779881
Q gi|254780455|r  243 TRTDIETQNAPYQMMQQWNRLYDDNLL-IVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNP  320 (418)
Q Consensus       243 ~~~~~~~~~~~~~a~~~~~~~yp~~~~-i~L~DTy~~~~~l~~~-~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp  320 (418)
                                   |.+.--..-|...- -.=+||.      ..+ ....++.+-|=+|--.|.. .+++.+.+   +...
T Consensus       177 -------------Av~~aR~~~~~~~kIEVEvesl------e~~~eAl~agaDiImLDNm~~e~-~~~av~~l---~~~~  233 (280)
T COG0157         177 -------------AVRRARAAAPFTKKIEVEVESL------EEAEEALEAGADIIMLDNMSPEE-LKEAVKLL---GLAG  233 (280)
T ss_pred             -------------HHHHHHHHCCCCCEEEEECCCH------HHHHHHHHCCCCEEEECCCCHHH-HHHHHHHH---CCCC
T ss_conf             -------------9999997589986289974999------99999997499999976999999-99999974---4477


Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             130899738989999999999724897378633464314656666665567773216898575
Q gi|254780455|r  321 QNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTK  383 (418)
Q Consensus       321 ~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve  383 (418)
                       ...+=+|++++.+.+...-+.    .+|.+-+|- |           -.+.|.|++-.++..
T Consensus       234 -~~~lEaSGgIt~~ni~~yA~t----GVD~IS~ga-l-----------ths~~~lDisl~~~~  279 (280)
T COG0157         234 -RALLEASGGITLENIREYAET----GVDVISVGA-L-----------THSAPALDISLDIVR  279 (280)
T ss_pred             -CEEEEEECCCCHHHHHHHHHC----CCCEEEECC-C-----------CCCCCCCCEEEEEEC
T ss_conf             -669997589787789998626----997998073-3-----------047753324888635


No 140
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=20.80  E-value=20  Score=15.57  Aligned_cols=55  Identities=24%  Similarity=0.478  Sum_probs=29.3

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             43412888878999999999997798811-308997389899999999997248973786334643
Q gi|254780455|r  293 KGFRHDSASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       293 ~GVR~DSGD~~~~~~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      .|||+|||--  -..++-..|     ||. .|.|+.+.+-+ +.+..+...... . ..-||-||+
T Consensus       363 ~gvRvDs~~~--~G~~v~~~y-----DsmlaKlI~~g~~R~-~Ai~rl~~aL~e-~-~I~Gv~Tni  418 (449)
T PRK06111        363 EGVRHDHAVE--NGVTVTPFY-----DPMIAKVIAHGETRE-EAIARLHDALEE-L-KVEGIKTNI  418 (449)
T ss_pred             CCEEEECCCC--CCCEECCCC-----CCHHHEEEEECCCHH-HHHHHHHHHHHC-C-EEECCCCCH
T ss_conf             9888853666--859708875-----653325679879999-999999999851-6-998943859


No 141
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=20.74  E-value=52  Score=12.73  Aligned_cols=31  Identities=6%  Similarity=0.028  Sum_probs=16.6

Q ss_pred             CCEEECCCCCHH--HHHHHHHHHHHHCCCCCCC
Q ss_conf             243412888878--9999999999977988113
Q gi|254780455|r  292 WKGFRHDSASPI--EGGEKIIAWWKKMNCNPQN  322 (418)
Q Consensus       292 ~~GVR~DSGD~~--~~~~k~~~~l~~~Gidp~~  322 (418)
                      +..|-+-.-|++  .+...+...+...++.|..
T Consensus       355 ~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQ  387 (524)
T COG4943         355 HVSINLSASDLASPRLIDRLNRKLAQYQVRPQQ  387 (524)
T ss_pred             EEEEEEEEHHHCCCHHHHHHHHHHHHCCCCHHH
T ss_conf             899865302202735889999998751867678


No 142
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.72  E-value=52  Score=12.73  Aligned_cols=24  Identities=4%  Similarity=-0.132  Sum_probs=9.6

Q ss_pred             EECCCCCHHHH-HHHHHHHHHHCCC
Q ss_conf             41288887899-9999999997798
Q gi|254780455|r  295 FRHDSASPIEG-GEKIIAWWKKMNC  318 (418)
Q Consensus       295 VR~DSGD~~~~-~~k~~~~l~~~Gi  318 (418)
                      +|+-+|-.+.+ +.++.+.+++.|+
T Consensus       564 ~rIGqgiEFDY~~v~a~~alk~~G~  588 (1063)
T PRK05294        564 NRIGQGIEFDYCCVHAALALREAGY  588 (1063)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             3204442300679999999996598


No 143
>KOG3303 consensus
Probab=20.70  E-value=52  Score=12.73  Aligned_cols=10  Identities=20%  Similarity=0.554  Sum_probs=3.9

Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999971
Q gi|254780455|r   60 LRTQLDHVRS   69 (418)
Q Consensus        60 L~~~i~~l~~   69 (418)
                      ++++++.+.+
T Consensus        30 ir~i~~E~~~   39 (192)
T KOG3303          30 IRQILEEIDA   39 (192)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 144
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=20.09  E-value=53  Score=12.64  Aligned_cols=17  Identities=6%  Similarity=0.079  Sum_probs=7.0

Q ss_pred             HHHCCCCCEEEEECCCC
Q ss_conf             67426997599842443
Q gi|254780455|r  173 KLKNFSGLKIVDFGTRR  189 (418)
Q Consensus       173 ~~~~~~~~~l~eFG~RR  189 (418)
                      .+.++.+.++.=.|+--
T Consensus       118 ~V~~av~vPLIi~G~~n  134 (322)
T PRK04452        118 EVLQAVDVPLIIGGSGN  134 (322)
T ss_pred             HHHHHCCCCEEEECCCC
T ss_conf             99975699989976788


Done!