Query gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 418 No_of_seqs 127 out of 1031 Neff 6.7 Searched_HMMs 23785 Date Mon May 30 11:45:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780455.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ybe_A Naprtase, nicotinate ph 100.0 0 0 950.9 45.2 414 4-417 20-433 (449) 2 2im5_A Nicotinate phosphoribos 100.0 0 0 857.9 40.5 382 10-417 2-393 (394) 3 1yir_A Naprtase 2, nicotinate 100.0 0 0 801.1 40.6 395 1-417 3-401 (408) 4 1vlp_A Naprtase, nicotinate ph 100.0 0 0 799.8 35.3 395 5-417 11-428 (441) 5 3os4_A Naprtase, nicotinate ph 100.0 0 0 780.0 43.6 389 6-416 3-395 (407) 6 2f7f_A Nicotinate phosphoribos 100.0 0 0 623.4 33.2 338 13-407 9-367 (494) 7 3dhf_A Nicotinamide phosphorib 100.0 0 0 525.7 26.4 365 8-402 5-427 (484) 8 2i1o_A Nicotinate phosphoribos 100.0 0 0 424.5 27.5 308 1-400 7-332 (398) 9 2i14_A Nicotinate-nucleotide p 100.0 0 0 421.4 25.4 313 1-398 7-327 (395) 10 2jbm_A Nicotinate-nucleotide p 99.4 2.4E-11 1E-15 95.8 16.3 256 34-392 40-298 (299) 11 2b7n_A Probable nicotinate-nuc 99.3 6.4E-10 2.7E-14 86.1 16.1 265 10-381 5-272 (273) 12 1qpo_A Quinolinate acid phosph 98.7 3.5E-06 1.5E-10 60.4 17.6 270 9-380 11-283 (284) 13 1o4u_A Type II quinolic acid p 98.7 4.9E-06 2.1E-10 59.4 17.0 204 108-381 79-283 (285) 14 3gnn_A Nicotinate-nucleotide p 98.6 5.2E-06 2.2E-10 59.2 15.0 243 34-383 53-298 (298) 15 3paj_A Nicotinate-nucleotide p 98.4 0.00011 4.7E-09 50.1 18.4 244 34-381 75-318 (320) 16 1qap_A Quinolinic acid phospho 98.4 8.3E-05 3.5E-09 51.0 16.9 241 34-380 51-294 (296) 17 3l0g_A Nicotinate-nucleotide p 98.3 0.00012 5E-09 49.9 17.1 270 9-386 27-299 (300) 18 3c2e_A Nicotinate-nucleotide p 98.1 0.00014 5.9E-09 49.4 13.6 248 34-382 36-293 (294) 19 1x1o_A Nicotinate-nucleotide p 98.1 0.00059 2.5E-08 45.2 16.6 268 9-383 15-285 (286) 20 3os4_A Naprtase, nicotinate ph 90.4 0.0079 3.3E-07 37.4 -3.7 79 61-146 68-153 (407) 21 2h9a_A Carbon monoxide dehydro 42.2 14 0.00058 15.2 10.0 55 168-228 144-204 (445) 22 3gkx_A Putative ARSC family re 40.5 15 0.00062 15.0 2.9 38 305-343 16-53 (120) 23 3fz4_A Putative arsenate reduc 39.1 15 0.00063 15.0 2.4 39 305-344 15-53 (120) 24 1z3e_A Regulatory protein SPX; 38.5 16 0.00066 14.8 2.5 39 305-344 13-51 (132) 25 2qv6_A MJ0145, GTP cyclohydrol 37.9 16 0.00068 14.7 2.7 32 324-355 185-218 (268) 26 2kok_A Arsenate reductase; bru 29.0 22 0.00093 13.8 2.1 37 305-342 17-53 (120) 27 1i1q_B Anthranilate synthase c 28.9 22 0.00094 13.8 6.1 52 270-330 3-56 (192) 28 1rw1_A Conserved hypothetical 27.4 24 0.00099 13.6 2.7 37 305-342 12-48 (114) 29 1s3c_A Arsenate reductase; ARS 26.5 24 0.001 13.5 3.1 12 329-340 74-85 (141) 30 3f0i_A Arsenate reductase; str 26.0 25 0.0011 13.4 2.2 36 306-342 17-52 (119) 31 2veb_A Protoglobin; hemoprotei 24.4 25 0.001 13.4 1.5 37 67-103 29-67 (195) 32 1lld_A L-lactate dehydrogenase 21.2 31 0.0013 12.8 4.0 13 217-229 159-171 (319) No 1 >1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Probab=100.00 E-value=0 Score=950.89 Aligned_cols=414 Identities=59% Similarity=1.100 Sum_probs=403.4 Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHC Q ss_conf 25656710012440117899999999984899659999996588755440000236999999997169998999999837 Q gi|254780455|r 4 YFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVEN 83 (418) Q Consensus 4 ~~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~ 83 (418) +-+.-+|||+||||||+|||||+||||+++|+++|+|+||||++++++++|++++||+++|++|++||||+|||+||+++ T Consensus 20 ~~~~~~pii~SLLdTDlYklTM~qa~~~~~~~~~a~f~~f~R~~~~~~~~~~v~~gL~~~i~~l~~l~ft~eei~yL~~~ 99 (449) T 1ybe_A 20 HTWKLDPIVRSLIDTDFYKLLMLQMIWKLYPEVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGN 99 (449) T ss_dssp --CCCCCSCCCTTCSBHHHHHHHHHHHHHCTTCBEEEEEEESCCSSCSTTTSCHHHHHHHHHHHTTCCCCHHHHHHHHHS T ss_pred CCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC T ss_conf 44688402114503278999999999986899759999997889877516889989999999997089799999999846 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 77555557898899997508998416873399269998548778677888999999888887753134866799999999 Q gi|254780455|r 84 SFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQA 163 (418) Q Consensus 84 ~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~ 163 (418) +++.+.+.|+++|++||++++|++.+++++||+++|+|+|||.+|||||||||+||||+|++++.+.+.....+..++.+ T Consensus 100 ~~~~~~~~f~~~fl~~L~~~~f~~~~~~~~eg~l~l~ieGp~~~~~L~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~ 179 (449) T 1ybe_A 100 TFYGRSQIFEPEFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARA 179 (449) T ss_dssp CSSSCSCCSCHHHHHHHHTCCCCCCEEEECSSCEEEEECSBHHHHGGGHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 87545566898999998617899847996088189999655435428878999999999999887410022578999999 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC Q ss_conf 99999877767426997599842443479788999999998421212012478899997289876752048987640012 Q gi|254780455|r 164 KKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAIT 243 (418) Q Consensus 164 ~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~ 243 (418) ..++.++++++++++|++++|||+|||||+++|++++.++|+++++||+|||||+||++|||||+|||||||||+|+++. T Consensus 180 ~~~~~~~a~~l~~~~g~~l~EFGtRRa~s~q~~d~~l~a~r~a~~ggf~GTSNV~aa~~~gip~~GTmAHs~v~~~~~~~ 259 (449) T 1ybe_A 180 KAKMWEKVERLRELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGPAFTGTSNVLLAMDSDLEAVGTNAHELPMVVAALA 259 (449) T ss_dssp HHHHHHHHHHHTTCTTCCEEECCTTTCSCHHHHHHHHHHHHHHHGGGEEEESBHHHHHHHTCCBCCCCCTHHHHHHHHHC T ss_pred HHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHH T ss_conf 99999999998745898230213322346378999999999982488821066999987699961441769999875131 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 20367865499999999996398865986346898999998997310024341288887899999999999779881130 Q gi|254780455|r 244 RTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNK 323 (418) Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k 323 (418) +.+.++++++..||++|+++||++++|+|+|||++++|++++.++..++.|||+|||||++|++|+|++||++|++|.+| T Consensus 260 ~~~~~~~~~~~~a~~~w~~~y~~~l~i~L~DT~g~~~fl~~~~~~~~~~~GVRlDSGDl~~~s~k~r~~~d~~G~~p~~K 339 (449) T 1ybe_A 260 QTNEELAAAPYQVLKDWNRLYGGNLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEWWRKMGRDPRTK 339 (449) T ss_dssp CSHHHHHHHHHHHHHHHHHHCCGGGCEECCCTTCHHHHHHTCCGGGGGSSEECCCSSCHHHHHHHHHHHHHHTTCCGGGS T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 10689998899999999986699635753064458999987787448788890799898999999999999869997875 Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCH Q ss_conf 89973898999999999972489737863346431465666666556777321689857576811167326887524888 Q gi|254780455|r 324 FLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDI 403 (418) Q Consensus 324 ~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~tg~~ 403 (418) .|||||||||++|.+|+++++++++++|||||+|||||+|..+.++.++|+|||||||||+||+|||||||+|||+|||+ T Consensus 340 ~iv~Sd~LD~~~i~~l~~~~~g~~~d~FGIGT~Lt~d~~g~~~~~~~~~p~l~~VyKLve~~G~P~~KlSd~~gK~tg~~ 419 (449) T 1ybe_A 340 MLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAPKTIASLKPISIVCKVSDANGRPAVKLSDNPQKATGDP 419 (449) T ss_dssp EEEECTTCCHHHHHHHHHHHTTTSEEEEEECHHHHCCCTTCCC-----CCCCCEEEEEEEETTEECCBCCSSGGGCBSCH T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCH T ss_conf 79992899999999999985698532896486306588666755446798653699988468932467248988766998 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 99999999809666 Q gi|254780455|r 404 SEIKRYLKIFKIKK 417 (418) Q Consensus 404 ~~~~~~~~~~~~~~ 417 (418) +.|++|+|+|++.+ T Consensus 420 ~~~~~~~r~~g~~~ 433 (449) T 1ybe_A 420 AEVERYLKFFGEED 433 (449) T ss_dssp HHHHHHHHHHCCCC T ss_pred HHHHHHHHHHCCCC T ss_conf 99999999837676 No 2 >2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Probab=100.00 E-value=0 Score=857.87 Aligned_cols=382 Identities=31% Similarity=0.410 Sum_probs=347.9 Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC Q ss_conf 10012440117899999999984899659999996588755440000236999999997169998999999837775555 Q gi|254780455|r 10 PIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKK 89 (418) Q Consensus 10 piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~ 89 (418) +||+||||||+|||||+|+||+++|+++|+|+||+|+++ .+++.+++||+++|++|++||||+|||+||++.+ T Consensus 2 ~iI~SlLdTD~YklTM~~a~~~~~~~~~a~f~~~~R~p~--~~~~~~~~gl~~~l~~l~~lrft~eei~yL~~~~----- 74 (394) T 2im5_A 2 GIIRSILDTDLYKFTTGYAYAKLFPRAYGEFRFIDRNRQ--GFTEEFAELVRGEIRAMAALSLTRDEKEFLQREL----- 74 (394) T ss_dssp -CCCCTTCSBHHHHHHHHHHHHHCTTCEEEEEEEETTCC--CCCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHC----- T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----- T ss_conf 710124033789999999999868995799999952886--5305899999999999986699999999998607----- Q ss_pred CCCCHHHHHHHHHCCCCCC---EEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 5789889999750899841---6873399269998548778677888999999888887753134866799999999999 Q gi|254780455|r 90 QLFEPKFLSWLSDFQLPEY---DLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKK 166 (418) Q Consensus 90 ~~~~~~fl~~L~~~~f~~~---~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (418) ++|+++|++||++|||+++ ++..+||+++|+|+|||.+|||||||||+||||++++++.+.+........ T Consensus 75 ~~~~~~fl~yL~~frf~~~e~~i~~~~eg~l~i~v~Gp~~~~~l~Et~lL~iin~~~~~~~~~~~~~~~~~~~------- 147 (394) T 2im5_A 75 PYLPPIYIDFLDGFRFDPEEVTVSIDAQGHLDIRAQGLLYRVTLWETPILAVISELYYRFIGAEPDWKQVEEV------- 147 (394) T ss_dssp TTSCHHHHHHHHHCCCCGGGEEEEECTTSCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHTTCCCCHHHHHHH------- T ss_pred CCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------- T ss_conf 8789899999985787744589996689879999973247889999999999999999876424779999999------- Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCH Q ss_conf 99877767426997599842443479788999999998421212012478899997289876752048987640012203 Q gi|254780455|r 167 LWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTD 246 (418) Q Consensus 167 ~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~ 246 (418) ..+|..++ .+++++++|||+|||||+.+|++++.++++++++||+|||||+||++|||||+|||||||||+|+++. T Consensus 148 ~~~k~~~~-~~~~~~~~eFG~RRa~~~~~~~~~~~~~~a~~~~G~~gTSNv~aa~~~gip~~GTmAHs~i~~~~~~~--- 223 (394) T 2im5_A 148 TRSKGELM-REHRATFSIFGMRRRFSLEVEDRVTDILKQYAGESLFGTSNVHLAHKHGLRVSGTHPHEWIQFHGAIY--- 223 (394) T ss_dssp HHHHHHHH-HHTTCCEEECCSTTCSCHHHHHHHHHHHHHHSGGGEEEESBHHHHHHHTCEECCCCCHHHHHHHHHHH--- T ss_pred HHHHHHHH-HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH--- T ss_conf 99999997-35899778776766664326699999999983388653346889986699984101339999754465--- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 6786549999999999639886598634689899999899-731002434128888789999999999977988113089 Q gi|254780455|r 247 IETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAP-SWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFL 325 (418) Q Consensus 247 ~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~-~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~i 325 (418) +++++|..||++|+++||++++|+|+|||++++|++++. ..+..++|||||||||++|++++|++||++|++|.+|+| T Consensus 224 -~~~~a~~~Af~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~~GvRlDSGDl~~ls~~~r~~~d~~G~~~~~k~I 302 (394) T 2im5_A 224 -GYKMANYVAMEDWINVYDGDLGTVLTDTYTTDVFMRNFSKKHAMLFTSLRHDSGDPEIFIEKAVRRYEELRVDPKIKYI 302 (394) T ss_dssp -CTTTHHHHHHHHHHHHHTTSSCEEECCTTCHHHHHHHCCHHHHHHCCEEEECSSCHHHHHHHHHHHHHHTTCCGGGCEE T ss_pred -HHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf -6788899999999997599874543010013999998898732044764548998799999999999977979884399 Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC------CCCEEEEECCCCCC Q ss_conf 973898999999999972489737863346431465666666556777321689857576------81116732688752 Q gi|254780455|r 326 VFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKAN------DKHAVKLSDDPAKT 399 (418) Q Consensus 326 v~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~------g~P~~KlSd~~~K~ 399 (418) ||||||||++|.+|+++++++++++|||||+|||| |+.++|+||+|||||+|+ |+||||+||+|+|+ T Consensus 303 v~S~~Lde~~i~~l~~~~~~~~~~~fGVGT~L~~d-------t~~~~p~L~~VyKLv~~~~~~~~~~~P~~KlSd~~~K~ 375 (394) T 2im5_A 303 IFSDSLTPQRAIEIQKLCAGRIKASFGIGTNLTND-------VGGGVEPLNIVMKLWKCKMTAKDDWHYCVKLSDVDGKH 375 (394) T ss_dssp EECSSCCHHHHHHHHHHHTTTSEEEEEECHHHHSC-------CSTTCCCCCEEEEEEEEESSTTSCCEECCBCCSSTTCC T ss_pred EECCCCCHHHHHHHHHHHCCCCCCEEECCCCEECC-------CCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCC T ss_conf 98399999999999998668987278867131646-------88899977579988775355566895127945898776 Q ss_pred CCCHHHHHHHHHHCCCCC Q ss_conf 488899999999809666 Q gi|254780455|r 400 TGDISEIKRYLKIFKIKK 417 (418) Q Consensus 400 tg~~~~~~~~~~~~~~~~ 417 (418) |||++.+++|++.|++++ T Consensus 376 tg~~~~~~~~~~~~g~~~ 393 (394) T 2im5_A 376 TGEPEEILLAMNTLGIKP 393 (394) T ss_dssp BSCHHHHHHHHHHHTC-- T ss_pred CCCHHHHHHHHHHHCCCC T ss_conf 799999999999839767 No 3 >1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Probab=100.00 E-value=0 Score=801.13 Aligned_cols=395 Identities=29% Similarity=0.489 Sum_probs=349.3 Q ss_pred CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 95225656710012440117899999999984899659999996588755440000236999999997169998999999 Q gi|254780455|r 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL 80 (418) Q Consensus 1 m~~~~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL 80 (418) |+|... ++|||+||||||+|||||+|+||+++|+++++|+||+|+++. ++.+++||+++|++|+++|||++||+|| T Consensus 3 ~~~~~~-~~~ii~SlLdTD~YklTM~~~~~~~~~~~~~~f~~~~R~~~~---~~~~~~gL~~~l~~l~~l~ft~eei~yL 78 (408) T 1yir_A 3 LAESAF-SERIVQNLLDTDFYKLTMMQAVLHNYPNAEVEWEFRCRNQED---LRLYLPAIREQLEYLAGLAISDEQLAFL 78 (408) T ss_dssp CCCBSC-CSCSSCSTTSSBHHHHHHHHHHHHHCTTCEEEEEEEETTCCC---CGGGHHHHHHHHHHHHHCCCCHHHHHHH T ss_pred CCCCCC-CHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC---CCCHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 774568-804412350306659999999998689966999999678986---4459999999999997189999999999 Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCEE--EECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 837775555578988999975089984168--733992699985487786778889999998888877531348667999 Q gi|254780455|r 81 VENSFYGKKQLFEPKFLSWLSDFQLPEYDL--SHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDL 158 (418) Q Consensus 81 ~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~--~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~ 158 (418) ++. ++|+++|++||++|+|++..+ .+.+++|+|+|+|||.+++|||||||+|||++++++|.+.+....... T Consensus 79 ~~~------~~f~~~fl~~L~~~~~~~~~~~~~v~~~ep~l~I~gp~~~~~l~Et~LL~ii~~~~~~at~~~~~~~~a~~ 152 (408) T 1yir_A 79 ERI------PFLAPDFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAATVEQARE 152 (408) T ss_dssp HTS------TTSCHHHHHHHHHCCCCGGGEEEEEETTEEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHCTTCBHHHHHH T ss_pred HHC------CCCCHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 838------99998999986436156479888764996899999551574169999999999999998600478999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf 99999999998777674269975998424434797889999999984212120124788999972898767520489876 Q gi|254780455|r 159 LYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMV 238 (418) Q Consensus 159 ~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a 238 (418) .......++..++.. ....|++++|||+|||||+++|++++.++|+++++||+|||||++|++||+||+|||||||||+ T Consensus 153 ~~~~~~~~~~~~~~~-~~~~g~~l~eFG~RRa~s~~~~~~~~~~~raa~iggf~GTSNv~aa~~~gi~~~GTmaHs~i~~ 231 (408) T 1yir_A 153 RLQEKFDWLRREASA-EELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDLKPLGTMAHEWLMA 231 (408) T ss_dssp HHHHHHHHHHTTSCH-HHHTTCEEEECCSTTCSCHHHHHHHHHHHHHHCSSEEEEESBHHHHHHTTCCBCCCCCHHHHHH T ss_pred HHHHHHHHHHHHHHH-HCCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCHHHHHH T ss_conf 999999999877543-1158982743144233627889999999999840884347388899973999877644099998 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEECCCCCHHHHHHHHHHHHHHCC Q ss_conf 4001220367865499999999996398865986346898999998997310-024341288887899999999999779 Q gi|254780455|r 239 AAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMT-QWKGFRHDSASPIEGGEKIIAWWKKMN 317 (418) Q Consensus 239 ~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~-~~~GVR~DSGD~~~~~~k~~~~l~~~G 317 (418) |+++.+ .++++|..||++|+++||++++|+|+|||+++++++++....+ .+.|||+|||||.++++|+|++|+++| T Consensus 232 ~~~~~~---~~~~~e~~Af~~~~~~yp~~~~i~l~Dt~~~~~~~~~~~~~~~~~~~gvR~DSGD~~~~~~k~~~~l~~~g 308 (408) T 1yir_A 232 HQQLGP---RLIDSQSAALDCWVREYRGLLGIALTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYLKLG 308 (408) T ss_dssp HHHHSB---CGGGHHHHHHHHHHHHHTTSSCEEESCSSCHHHHHHHCCHHHHHHCCEEEECSSCHHHHHHHHHHHHHHHT T ss_pred HHHCCC---HHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 750030---12569999999989858997346521016588899999998755157766678874999999999999769 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCC Q ss_conf 88113089973898999999999972489737863346431465666666556777321689857576811167326887 Q gi|254780455|r 318 CNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPA 397 (418) Q Consensus 318 idp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~ 397 (418) ++|.+|+||+|||||+++++.++++++++++++|||||+||||++ ++|++|+||||||+||+||||+||+|| T Consensus 309 ~~~~~k~ii~Sdgld~e~i~~~~~~~~~~~~~~fGVGT~l~~~~~--------~~~~l~~v~Klv~~~g~p~~KiS~~~g 380 (408) T 1yir_A 309 IDPLTKTLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFTCDLP--------GVEPMNIVVKMSACNGHPVAKISDTPG 380 (408) T ss_dssp CCGGGSEEEECSSCCHHHHHHHHHHHTTTSEEEEEECHHHHSCCT--------TCCCCCEEEEEEEETTEECCCCCSCC- T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCEECCCC--------CCCCCEEEEEEHHCCCEEEEEECCCCC T ss_conf 998752799956998999999999847997728970756033899--------999860899772108853357328987 Q ss_pred CCCCCHHHHHHH-HHHCCCCC Q ss_conf 524888999999-99809666 Q gi|254780455|r 398 KTTGDISEIKRY-LKIFKIKK 417 (418) Q Consensus 398 K~tg~~~~~~~~-~~~~~~~~ 417 (418) |+|||++.+.++ ++||++.+ T Consensus 381 K~~~~~~~~~~~~k~v~~~~~ 401 (408) T 1yir_A 381 KAQCRDPDFIHYLKHVFQVAE 401 (408) T ss_dssp ------CHHHHHHHHHHTC-- T ss_pred CCCCCCHHHHHHHHHHCCCCC T ss_conf 603898789998757203455 No 4 >1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Probab=100.00 E-value=0 Score=799.84 Aligned_cols=395 Identities=33% Similarity=0.490 Sum_probs=341.5 Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCC Q ss_conf 56567100124401178999999999848996599999965887554400002369999999971699989999998377 Q gi|254780455|r 5 FSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENS 84 (418) Q Consensus 5 ~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~ 84 (418) -+-+||||+||||||+|||||+|+||+++|+++|+|+||+|++|. .++|.+++||+++|++|++||||+|||+||++.+ T Consensus 11 ~~~~~pii~SLLdTDlYklTM~~a~~~~~~~~~~~f~~f~R~~~~-~~~~~v~~gL~~~l~~l~~l~ft~eei~yL~~~~ 89 (441) T 1vlp_A 11 HHMSEPVIKSLLDTDMYKITMHAAVFTNFPDVTVTYKYTNRSSQL-TFNKEAINWLKEQFSYLGNLRFTEEEIEYLKQEI 89 (441) T ss_dssp CCCCCCSCCCTTSSBHHHHHHHHHHHHHCTTCEEEEEEEESCTTC-CBCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHC T ss_pred CCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC T ss_conf 234654211041108899999999997299966999999678987-6425899999999999985899999999997457 Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCC---EEE---------ECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 755555789889999750899841---687---------33992699985487786778889999998888877531348 Q gi|254780455|r 85 FYGKKQLFEPKFLSWLSDFQLPEY---DLS---------HKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMN 152 (418) Q Consensus 85 ~~~~~~~~~~~fl~~L~~~~f~~~---~~~---------~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~ 152 (418) ++|+++|++||++++|... .+. +..+++.|+|+|||.+|||||||||+|||+++++++.+.++ T Consensus 90 -----~~f~~~fl~~L~~~~f~~~peg~i~f~~ep~~~~~~~~~l~i~V~gp~~e~~L~Et~lL~iI~~~~~~at~~~~~ 164 (441) T 1vlp_A 90 -----PYLPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTHYKLKILVSGSWKDTILYEIPLLSLISEAYFKFVDIDWD 164 (441) T ss_dssp -----TTSCHHHHHHHHSTTCCCCHHHHEEEEEEEETTEEEEEEEEEEEEEEHHHHTTSHHHHHHHHHHHHHHHTCCCCC T ss_pred -----CCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf -----889989999985499675654169970666556566771489998459999999999999999999998501114 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-------HCCCCEEHHHHHHHHHHCCC Q ss_conf 66799999999999998777674269975998424434797889999999984-------21212012478899997289 Q gi|254780455|r 153 PFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQE-------GIKDSFLGTSNALLAMNYKI 225 (418) Q Consensus 153 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~ra-------a~~~gf~GTSNv~aa~~~gi 225 (418) ..... .+++++...+ ++++++++|||+|||||+++|+.++.++++ ++++||+|||||++|++||| T Consensus 165 ~~~~~-------~~~~~k~~~l-~~~~~~~~eFG~RRa~s~~~~~~v~~~~~aa~~~~~~~~~~gf~GTSNv~aa~~~gi 236 (441) T 1vlp_A 165 YENQL-------EQAEKKAETL-FDNGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNPDRNKSLLLGTSNILFAKKYGV 236 (441) T ss_dssp CTTHH-------HHHHHHHHHH-HHTTCCEEECCSTTCSCHHHHHHHHHHHHHHHHHSHHHHTTTEEEESBHHHHHHHTC T ss_pred HHHHH-------HHHHHHHHHH-HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHCCC T ss_conf 99999-------9999999998-618983884447666884289999999999985144653478664127899998199 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHH-HHHHCCCCEEECCCCCHH Q ss_conf 87675204898764001220367865499999999996398-8659863468989999989-973100243412888878 Q gi|254780455|r 226 NAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDD-NLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPI 303 (418) Q Consensus 226 ~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~-~~~i~L~DTy~~~~~l~~~-~~~~~~~~GVR~DSGD~~ 303 (418) ||+|||||||||+|+++.+ +++.++..+++.|+++|++ +++|+|+|||+++.|++++ ...+.++.|||+|||||+ T Consensus 237 p~~GTmaHs~v~~~~~~~e---a~~~a~~~~~~~~~~~y~~~~~gi~l~Dt~~~~~~l~~~~~~~~~~~~GVRlDSGDl~ 313 (441) T 1vlp_A 237 KPIGTVAHEWVMGVASISE---DYLHANKNAMDCWINTFGAKNAGLALTDTFGTDDFLKSFRPPYSDAYVGVRQDSGDPV 313 (441) T ss_dssp CBCCCCCHHHHHHHHHHHT---CCTTHHHHHHHHHHHHHCGGGCCEEECCTTCHHHHHTTCCTTHHHHSCEEEECSSCHH T ss_pred CCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCHH T ss_conf 7645530588997423118---8999998768889987177555310220213699998766864000225532788767 Q ss_pred HHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 999999999997798811-3089973898999999999972-48973786334643146566666655677732168985 Q gi|254780455|r 304 EGGEKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHF-ENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV 381 (418) Q Consensus 304 ~~~~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~-~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl 381 (418) +|++|+|++|+++|++|. +|+||||||||+|+++.|.+.+ +++++|+|||||+||||+.+... .+.+.||||+|||| T Consensus 314 ~~~~k~~~~~~~~~~~~~~~~~Iv~S~~Ld~e~~~~i~~~~~~~~~id~fGVGT~L~t~~~~~~~-~~~~~~pl~~VyKL 392 (441) T 1vlp_A 314 EYTKKISHHYHDVLKLPKFSKIICYSDSLNVEKAITYSHAAKENGMLATFGIGTNFTNDFRKKSE-PQVKSEPLNIVIKL 392 (441) T ss_dssp HHHHHHHHHHHTTSCCCTTSSEEEECSSCCHHHHHHHHHHHHHTTCEEEEEECHHHHSCEECSSS-TTSEECCCCEEEEE T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC-CCCCCCCCCEEEEE T ss_conf 89999999999716898776499997999888999999998669960489727753447866665-56789844679998 Q ss_pred EEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 757681116732688752488899999999809666 Q gi|254780455|r 382 TKANDKHAVKLSDDPAKTTGDISEIKRYLKIFKIKK 417 (418) Q Consensus 382 ve~~g~P~~KlSd~~~K~tg~~~~~~~~~~~~~~~~ 417 (418) ||+||+|||||||+|+|+|||+..+++++|+|++.+ T Consensus 393 v~~~g~p~~KlSd~~~K~t~~~~~v~~~~~~~g~~~ 428 (441) T 1vlp_A 393 LEVNGNHAIKISDNLGKNMGDPATVKRVKEELGYTE 428 (441) T ss_dssp EEETTEECCBCCSSTTCCBSCHHHHHHHHHHTTCC- T ss_pred EEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC T ss_conf 978883247840898776799999999999728540 No 5 >3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Probab=100.00 E-value=0 Score=780.00 Aligned_cols=389 Identities=32% Similarity=0.528 Sum_probs=338.0 Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC Q ss_conf 65671001244011789999999998489965999999658875544000023699999999716999899999983777 Q gi|254780455|r 6 STSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF 85 (418) Q Consensus 6 ~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~ 85 (418) +..+|||+||||||+|||||+|+||+++|+.+++|+||+|+++ +.++| ++||+++|++|+++|||+|||+||++. T Consensus 3 ~~~spii~SlLdTD~YklTM~~~~~~~~~~~~~~f~~f~R~~~-~~~~~--~~gL~~~l~~l~~l~ft~eei~yL~~~-- 77 (407) T 3os4_A 3 QDASPILTSLLDTDAYKLHMQQAVFHHYRHITVAAEFRCRSDE-LLGVY--ADEIRHQVTLMGQLALTSDEFIYLSSL-- 77 (407) T ss_dssp CTTSCSCCCTTSSBHHHHHHHHHHHHHCTTCEEEEEEEECSSC-CCGGG--HHHHHHHHHHHTTCCCCHHHHHHHHTS-- T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHC-- T ss_conf 9999633255000677999999999878996699999968998-62228--999999999998569999999999857-- Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEE--EECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 5555578988999975089984168--73399269998548778677888999999888887753134866799999999 Q gi|254780455|r 86 YGKKQLFEPKFLSWLSDFQLPEYDL--SHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQA 163 (418) Q Consensus 86 ~~~~~~~~~~fl~~L~~~~f~~~~~--~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~ 163 (418) ++|+++|++||+++||++..+ .+.+|+|.++|+|||.++++||+|||+|+|+++....+............... T Consensus 78 ----~~~~~~fl~~L~~~rf~~~~~~~~~~~g~l~i~i~gp~~~~v~~e~plL~I~~~l~~~~~~~~~~~~~~~~~~~~~ 153 (407) T 3os4_A 78 ----PFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRIAGLWCEVIMWEVPLLAVISEIVHRRRSTQVTTDQAVQQLRTK 153 (407) T ss_dssp ----SSCCHHHHHHHHHCCCCGGGEEEEEETTEEEEEEEEEHHHHTTSHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH T ss_pred ----CCCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf ----9986899999973888801678852799467999730110550540588860007766665668999999999999 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC Q ss_conf 99999877767426997599842443479788999999998421212012478899997289876752048987640012 Q gi|254780455|r 164 KKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAIT 243 (418) Q Consensus 164 ~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~ 243 (418) ..+ ..+.....++.+++++|||+|||||+++|.+ +.++++++++||+|||||++|++||+||+|||||||+|+|+++. T Consensus 154 ~~~-~~~~~~~~~~~~~~l~eFG~RR~~s~~~~~~-~~~a~aa~~~G~~gTSNv~aa~~ygi~~~GTmaHs~v~~~~~~~ 231 (407) T 3os4_A 154 LEQ-FNALSADIDITHFKLMDFGTRRRFSREIQHT-VVSTLKDEFPYLVGTSNYDLARTLALAPVGTQAHEWFQAHQQIS 231 (407) T ss_dssp HHH-HHHHTTTSCCTTCCEEECCSTTCSCHHHHHH-HHHHHHHHCTTEEEESBHHHHHHHTCCBCCCCCHHHHHHHTTTS T ss_pred HHH-HHHHHHHHCCCCCCHHHHHHCCCCCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH T ss_conf 999-9998633124898376643044456788999-99999986488537689999998299986631558999875132 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 2036786549999999999639886598634689899999899-731002434128888789999999999977988113 Q gi|254780455|r 244 RTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAP-SWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQN 322 (418) Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~-~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~ 322 (418) + .++++|..||+.|+++||++++++|+|||+++.+++++. ..+.++.|||+|||||+++++++|++||++|++|.+ T Consensus 232 ~---~~~~se~~Af~~~~~~yp~~~~~~l~Dt~~~~~~l~~~~~~~~~~~~GVR~DSGD~~~l~~~~r~~ld~~G~~~~~ 308 (407) T 3os4_A 232 P---TLANSQRVALQVWLDEYPNQLGIALTDCITMDAFLRDFDLAFANRYQGLRHDSGDPIEWGEKAIAHYEKLGIDPMK 308 (407) T ss_dssp S---SGGGHHHHHHHHHHHHCSSSSCEEECCSSCHHHHHHHCCHHHHHHSCEEEECSSCHHHHHHHHHHHHHHTTCCGGG T ss_pred H---HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 7---8999999999999986699727982524758889999999856578870208998789999999999976998787 Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCC Q ss_conf 08997389899999999997248973786334643146566666655677732168985757681116732688752488 Q gi|254780455|r 323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGD 402 (418) Q Consensus 323 k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~tg~ 402 (418) |+||+|||||+|+|++|+++++++++++|||||+||||+ .++|+||+||||||+||+||||+||+|+|+||| T Consensus 309 k~Ii~Sd~Ld~e~i~~l~~~~~~~~~~~FGvGT~L~~~~--------~~~p~l~~VyKLv~~~g~P~~KlSd~~~K~t~~ 380 (407) T 3os4_A 309 KVLVFSDNLDLEKALFLYRHFYQRIKLVFGIGTRLTCDI--------PDVKPLNIVIKLVECNDKPVAKLSDSPGKTICQ 380 (407) T ss_dssp SEEEECSSCCHHHHHHHHHHHTTTSEEEEEECHHHHSCC--------TTCCCCCEEEEEEEETTEECCCCCSSTTCCCCC T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCC--------CCCCCCCEEEEEEEECCEEEEEECCCCCCCCCC T ss_conf 089996999999999999975588770896785503589--------999976578877667885347713898664789 Q ss_pred -HHHHHHHHHHCCCC Q ss_conf -89999999980966 Q gi|254780455|r 403 -ISEIKRYLKIFKIK 416 (418) Q Consensus 403 -~~~~~~~~~~~~~~ 416 (418) +..+.+++|+|++- T Consensus 381 ~~~~~~~~~~~~~~~ 395 (407) T 3os4_A 381 DPAFVDQLRKAFALP 395 (407) T ss_dssp CHHHHHHHHHHTTCC T ss_pred CHHHHHHHHHHCCCC T ss_conf 989999999980994 No 6 >2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI, protein structure initiative; 2.00A {Enterococcus faecalis V583} SCOP: c.1.17.1 d.41.2.1 Probab=100.00 E-value=0 Score=623.43 Aligned_cols=338 Identities=22% Similarity=0.274 Sum_probs=290.7 Q ss_pred HHHHCCHHHHHHHHHHHHHH-CCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 12440117899999999984-89965999999658875544000023699999999716999899999983777555557 Q gi|254780455|r 13 SSLLDTDFYKILMLQLIWKF-YPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQL 91 (418) Q Consensus 13 ~SlLdTD~YkltM~~a~~~~-~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~ 91 (418) +..||||+|||||+|+||++ +|+++|+|++|+|+.| +.++|++++||+++|++|++++||+|||+||++.+ . T Consensus 9 ~~~L~TD~YkltM~~~~~~~~~~~~~~~f~~~~R~~p-~~~~~~v~~GL~~~l~~l~~~~ft~eei~yl~~~~------~ 81 (494) T 2f7f_A 9 SLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMP-FNHGYAIFAGLERLVNYLENLTFTESDIAYLREVE------E 81 (494) T ss_dssp CSTTCSCHHHHHHHHHHHHTTCTTCEEEEEEECSSCG-GGCSCEECCCHHHHHHHHHTCCCCHHHHHHHHHTS------C T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC-CCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCC------C T ss_conf 6235426559999999985099997699999977899-88754640749999999863999999999998389------9 Q ss_pred CCHHHHHHHHHCCCCCCEEEECCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 8988999975089984168733992------6999854877867788899999988888775313486679999999999 Q gi|254780455|r 92 FEPKFLSWLSDFQLPEYDLSHKKGQ------YVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKK 165 (418) Q Consensus 92 ~~~~fl~~L~~~~f~~~~~~~~eg~------~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~ 165 (418) |+++|++||++|||++.+++++||+ |+++|+|||.+++|+||+||++||+.+..+|.+ . T Consensus 82 f~~~~~~~L~~~~~~~~i~av~EGt~v~~~~p~l~V~G~~~~~~~~Et~lL~~l~~~s~iAT~a---------------~ 146 (494) T 2f7f_A 82 YPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGPLAQCQLVETALLNMVNFQTLIATKA---------------A 146 (494) T ss_dssp CCHHHHHHHHTCCCCCEEEECCTTCEECTTSCSEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH---------------H T ss_pred CCHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------H T ss_conf 9879999997489997599835866833995799999479999999999999975889999999---------------9 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC Q ss_conf 99987776742699759984244347978899999999842121201247889999728987675204898764001220 Q gi|254780455|r 166 KLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRT 245 (418) Q Consensus 166 ~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~ 245 (418) +.. ..+.+++++|||+||+|+++++ ..+.+++++|||+|||||++|++||+||+|||||||||+|++ T Consensus 147 ~~~------~~a~~~~~~~FGtRR~~~~~~~---~~~~~a~~~gG~~gTSnv~~a~~~gl~~~GT~aHs~i~a~g~---- 213 (494) T 2f7f_A 147 RIK------SVIGDDPLLEFGTRRAQELDAA---IWGTRAAYIGGADATSNVRAGKIFGIPVSGTHAHSLVQSYGN---- 213 (494) T ss_dssp HHH------HHHTTSCEEECCGGGSSSHHHH---HHHHHHHHHHTCCEESCHHHHHHHCCCBCCCCCHHHHHHHTS---- T ss_pred HHH------HHHCCCCEEEECCCCCCCHHHH---HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCC---- T ss_conf 999------9816997145368766777899---999999864884133679999975999703263799974477---- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH-----HHHHHHHHHHHC--CCCEEECCCCCHHHHHHHHHHHHHHCCC Q ss_conf 367865499999999996398865986346898-----999998997310--0243412888878999999999997798 Q gi|254780455|r 246 DIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT-----DFFLEHAPSWMT--QWKGFRHDSASPIEGGEKIIAWWKKMNC 318 (418) Q Consensus 246 ~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~-----~~~l~~~~~~~~--~~~GVR~DSGD~~~~~~k~~~~l~~~Gi 318 (418) +..||++|++.||. .+.|+|||++ ++++..+..+.. .+.|||+|||||.++++++|++||++|+ T Consensus 214 -------e~~a~~~~~~~~~~--~~~lidt~D~~~~~~~~a~~~~~~l~~~~~~~gVR~DSGDp~~~~~~vr~~ld~~G~ 284 (494) T 2f7f_A 214 -------DYEAFMAYAKTHRD--CVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVREQLDEAGF 284 (494) T ss_dssp -------HHHHHHHHHHHCSE--EEEECCSSCTTTTHHHHHHHHHHHHGGGSEEEEEEECSSCHHHHHHHHHHHHHHTTC T ss_pred -------HHHHHHHHHHHCCC--CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf -------99999999986789--826999961334679999997998652456666456679859999999999986799 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-----CCEEEEE Q ss_conf 81130899738989999999999724897378633464314656666665567773216898575768-----1116732 Q gi|254780455|r 319 NPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKAND-----KHAVKLS 393 (418) Q Consensus 319 dp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g-----~P~~KlS 393 (418) ++ ++|++|||||+++|.++..+ ++.+++|||||+|+|+ .+.|++|+|||||+++| +|++|+| T Consensus 285 ~~--v~Ii~Sdglde~~i~~l~~~--ga~i~~FGiGT~l~~~---------~~~~~l~~v~Kl~~~~g~~g~~~p~~K~s 351 (494) T 2f7f_A 285 TE--AKIYASNDLDENTILNLKMQ--KSKIDVWGVGTKLITA---------YDQPALGAVFKLVSIEGEDGQMKDTIKLS 351 (494) T ss_dssp TT--CEEEECSSCCHHHHHHHHHT--TCCCCEEEECHHHHTT---------TTSCCCCCEEEEEEEECTTSSEEECCCCC T ss_pred CC--EEEEECCCCCHHHHHHHHHC--CCCCEEEEECCCEEEC---------CCCCCCCCCHHHHHHCCCCCCEEEEEECC T ss_conf 86--08999099899999999975--9970698405513436---------99997667086676227887554112147 Q ss_pred CCCCCCC--CCHHHHH Q ss_conf 6887524--8889999 Q gi|254780455|r 394 DDPAKTT--GDISEIK 407 (418) Q Consensus 394 d~~~K~t--g~~~~~~ 407 (418) |+++|.| |.+..+| T Consensus 352 ~~~~K~t~pG~k~v~R 367 (494) T 2f7f_A 352 SNAEKVTTPGKKQVWR 367 (494) T ss_dssp SSTTSSCCCSCEEEEE T ss_pred CCCCCCCCCCCEEEEE T ss_conf 9988757766528999 No 7 >3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Probab=100.00 E-value=0 Score=525.69 Aligned_cols=365 Identities=16% Similarity=0.103 Sum_probs=272.9 Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCC-------CCCCCEEHHHHHHHH-HHHHCCCCCHHHHH Q ss_conf 67100124401178999999999848996-5999999658875-------544000023699999-99971699989999 Q gi|254780455|r 8 SDPIISSLLDTDFYKILMLQLIWKFYPDI-KVTFSLFNRQTQL-------HLSDKIDESELRTQL-DHVRSLRITEKERK 78 (418) Q Consensus 8 ~~piI~SlLdTD~YkltM~~a~~~~~~~~-~v~f~~~~R~~~~-------~~~~~~v~~gL~~~i-~~l~~~rft~eei~ 78 (418) +.+.++++|+||+|||||+++|+ ++. .+.+.|.+|++.. ....+.+++||+++| +++++++|+++|++ T Consensus 5 ~~~~~n~~L~TD~YKlTm~~~y~---~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~v~~GL~~~l~~~L~~~~ft~edi~ 81 (484) T 3dhf_A 5 AEAEFNILLATDSYKVTHYKQYP---PNTSKVYSYFECREKKTENSKLRKVKYEETVFYGLQYILNKYLKGKVVTKEKIQ 81 (484) T ss_dssp ----CCGGGSSBGGGGGGGGTSC---TTEEEEEEEEEECC------------CCEEECCCHHHHHHHHTSSCCCCHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHH T ss_conf 54666713733454660887566---665168999996167431100243324523356799999999984899999999 Q ss_pred HHHHCC-CCCCCCCCCHHHHHHHHH---CCCCCCEEEECCCCE------EEEEECCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998377-755555789889999750---899841687339926------9998548778677888999999888887753 Q gi|254780455|r 79 WLVENS-FYGKKQLFEPKFLSWLSD---FQLPEYDLSHKKGQY------VLNFHGLWKDVTLWEIPSLIIISTLYSRITV 148 (418) Q Consensus 79 yL~~~~-~~~~~~~~~~~fl~~L~~---~~f~~~~~~~~eg~~------~i~ieGp~~~~~l~EtplL~iine~~~~~~~ 148 (418) ||++.. .+.+.+.|+++|++||+. ++++..+.+++||++ +++||||+.+++|++++|.++|+++++..+. T Consensus 82 yl~~~~~~~~~~~~f~~~~~~yL~~~~~~~l~v~I~A~pEGt~vf~~ePll~Veg~~~~~~~~~~~lET~Ll~i~~~s~v 161 (484) T 3dhf_A 82 EAKDVYKEHFQDDVFNEKGWNYILEKYDGHLPIEIKAVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQSWYPITV 161 (484) T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHTTCCCEEEEECCTTCEEETTSCCEEEEESSGGGTTHHHHTHHHHHTTHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99988876247655797899999985089750799981698560599878999917478878888999999985137789 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHH----HCC Q ss_conf 1348667999999999999987776742699759984244347978899999999842121201247889999----728 Q gi|254780455|r 149 RSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAM----NYK 224 (418) Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~----~~g 224 (418) ++. ...+.........+.....++.+++++|||+||+||.+ +++.+ ++++++||.|||||.++. .|| T Consensus 162 AT~-----A~r~r~~~~~~~~~~~~~~~~~~~~~~dFG~Rr~~~~~---a~~~~-~~a~l~~F~Gtsnv~a~~~~~~~y~ 232 (484) T 3dhf_A 162 ATN-----SREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQE---TAGIG-ASAHLVNFKGTDTVAGLALIKKYYG 232 (484) T ss_dssp HHH-----HHHHHHHHHHHHHHHHSSCTTGGGSEEECCTTTSSCHH---HHHHH-HHHHTTTCCBBSBTHHHHHHHHHTC T ss_pred HHH-----HHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHH---HHHHH-HHHHHCCCCCCCHHHHHHHHHHCCC T ss_conf 999-----99999999999874035500157611126767748089---99999-9998617777545888887664048 Q ss_pred C----C--CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------HHHH--- Q ss_conf 9----8--76752048987640012203678654999999999963988659863468989999989------9731--- Q gi|254780455|r 225 I----N--AIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHA------PSWM--- 289 (418) Q Consensus 225 i----~--~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~------~~~~--- 289 (418) . + ++|||+|||+|+|++. .|.+||++|+++||++++++|+||||+++++.+. .... T Consensus 233 ~~~~~~~~~i~a~~Hs~~~a~~~~---------~E~~Af~~~~~~yp~~~~~ll~DTYd~~~~~~~~~~~~lk~~~~~~~ 303 (484) T 3dhf_A 233 TKDPVPGYSVPAAEHSTITAWGKD---------HEKDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDLRHLIVSRS 303 (484) T ss_dssp CSSSCSCBCCCBCCHHHHHTTCGG---------GHHHHHHHHHHHTSSSCEEEECCSSCHHHHHHTCCCCCTHHHHTTSC T ss_pred CCCCCCCCCCCHHHHHHHHHCCCH---------HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 777654566442678999870672---------79999999999768872899965653788888879999999984212 Q ss_pred -CCCCEEECCCCCHHHHHHHHHHHHHHCCC-C---------CCCEEEEECCCCCHHHHHHHHHHHCCC----CEEEEEEC Q ss_conf -00243412888878999999999997798-8---------113089973898999999999972489----73786334 Q gi|254780455|r 290 -TQWKGFRHDSASPIEGGEKIIAWWKKMNC-N---------PQNKFLVFSDNLDVDSIIYTYKHFENR----VQMIFGWG 354 (418) Q Consensus 290 -~~~~GVR~DSGD~~~~~~k~~~~l~~~Gi-d---------p~~k~iv~Sd~Ld~e~i~~l~~~~~~~----~~~~fGIG 354 (418) ..+.|||+|||||.++++++|++|++.|. + |..+.||+|||||+++|.+|++++.++ .+++|||| T Consensus 304 ~~~~~gvR~DSGD~~~~~~~~~~~l~~~~g~~~~~kg~kvl~~~v~Ii~sd~ld~~~i~~i~~~l~~~g~~~~~~~fGVG 383 (484) T 3dhf_A 304 TQAPLIIRPDSGNPLDTVLKVLEILGKKFPVTENSKGYKLLPPYLRVIQGDGVDINTLQEIVEGMKQKMWSIENIAFGSG 383 (484) T ss_dssp TTSCEEEECCSSCHHHHHHHHHHHHHHHSCCEECTTSCEECCTTEEEEECSSCSHHHHHHHHHHHHHTTBCGGGEEEEES T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEC T ss_conf 78863786899888999999999999864873132223257664379976999999999999999866887876447545 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEE--EEECCC--CEEEE-ECCCCCCCCC Q ss_conf 643146566666655677732168985--757681--11673-2688752488 Q gi|254780455|r 355 TNLTNDFDGCTPYQNLQTEKLQIVCKV--TKANDK--HAVKL-SDDPAKTTGD 402 (418) Q Consensus 355 T~Lt~d~~~~~~~~~~~~~~l~~VyKl--ve~~g~--P~~Kl-Sd~~~K~tg~ 402 (418) |+| +|+.++|++|+|||| +|+||+ |++|. +.+++|.+-| T Consensus 384 t~l---------~t~~~~~~lg~vyKl~ave~~g~~~~~~K~p~~~~~K~s~~ 427 (484) T 3dhf_A 384 GGL---------LQKLTRDLLNCSFKCSYVVTNGLGINVFKDPVADPNKRSKK 427 (484) T ss_dssp HHH---------HTSCCTTTTTEEEEEEEEEETTEEEECCCCCTTCGGGCCCC T ss_pred CCC---------CCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCC T ss_conf 641---------01478875672367888867890334321466899773677 No 8 >2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger motif, structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Probab=100.00 E-value=0 Score=424.54 Aligned_cols=308 Identities=16% Similarity=0.138 Sum_probs=249.1 Q ss_pred CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 95225656710012440117899999999984899659999996588755440000236999999997169998999999 Q gi|254780455|r 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL 80 (418) Q Consensus 1 m~~~~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL 80 (418) |+-+-...+.-|.|.|+||.|+++|+|++++++++..|+|++|+|.++ .++++++|++++++.++.+++ T Consensus 7 ~~~~~~a~~edI~~g~~tD~Y~~~t~~~l~~~~~~~~v~~e~~~r~~~---~~~~v~aGl~e~~~~l~~l~~-------- 75 (398) T 2i1o_A 7 MNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSGPL---DTWINFTGLDEVLKLLEGLDV-------- 75 (398) T ss_dssp CCSSSCCCHHHHHHTCSSCTHHHHHHHHHGGGGGGCEEEEEEEECSCC---SSCEECCCHHHHHHHHTTSSC-------- T ss_pred HHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCC---CCCEEEECHHHHHHHHHCCCC-------- T ss_conf 566742499987366166888999999999758997199999996268---755798089999999845998-------- Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCC------------CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 83777555557898899997508998416873399------------269998548778677888999999888887753 Q gi|254780455|r 81 VENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKG------------QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITV 148 (418) Q Consensus 81 ~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg------------~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~ 148 (418) ++++++|| .|+++|+|||.+++++||++|++|++.+..+|. T Consensus 76 ---------------------------~I~av~EG~~v~~~e~~~~~~pll~I~G~~~~~~~~Et~lLn~l~~~s~IAT~ 128 (398) T 2i1o_A 76 ---------------------------DLYAIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTK 128 (398) T ss_dssp ---------------------------EEEECCTTCEECSBCTTSCBCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHH T ss_pred ---------------------------EEEECCCCCEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ---------------------------18984796286378635668648999977999999999999998588999999 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCC Q ss_conf 13486679999999999999877767426997599842443479788999999998421212012478899997289876 Q gi|254780455|r 149 RSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAI 228 (418) Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~ 228 (418) + .+.. ..+++.+++|||+||++|... + ...+|+++|||.||||++++++|++|++ T Consensus 129 a---------------~~~~------~~~~~~~v~~fgtRr~~p~~~---~-~~~~Aa~igG~~gtsn~~~~~~~~~~~~ 183 (398) T 2i1o_A 129 A---------------SKVR------LAAGDSPFFSFGIRRMHPAIS---P-MIDRSAYIGGADGVSGILGAKLIDQDPV 183 (398) T ss_dssp H---------------HHHH------HHHTTSCEEECCGGGSCGGGH---H-HHHHHHHHTTCSEECCHHHHHHHTSCCC T ss_pred H---------------HHHH------HHHCCCCEEECCCCCCCHHHH---H-HHHHHHCCCCCCCCCHHHHHHHCCCCHH T ss_conf 9---------------9999------981897257565544797789---9-8507760578876431887977599637 Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH-HHHHHCCCCEEECCC-----CCH Q ss_conf 75204898764001220367865499999999996398865986346898999998-997310024341288-----887 Q gi|254780455|r 229 GTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEH-APSWMTQWKGFRHDS-----ASP 302 (418) Q Consensus 229 GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~-~~~~~~~~~GVR~DS-----GD~ 302 (418) |||+|||+|+|+... .+...+...+|+...++|+|||++..+... ....+.+..|||+|| ||+ T Consensus 184 gt~~Hs~i~~~g~~~-----------~~~~~~~~~~~~~~~~~lvDt~~~~~~~a~~~~~~~~~~~~irlDs~~pd~gd~ 252 (398) T 2i1o_A 184 GTMPHALSIMLGDEE-----------AWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNF 252 (398) T ss_dssp CCCCHHHHHHHCHHH-----------HHHHHHHTCCTTSCCEEECCSSSCHHHHHHHHHTTCSCCCEEEECCCGGGCSCH T ss_pred HHHHHHHHHHCCHHH-----------HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCH T ss_conf 764234887558399-----------999999962666886999997342799999999861426744126878777779 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 89999999999977988113089973898999999999972489737863346431465666666556777321689857 Q gi|254780455|r 303 IEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVT 382 (418) Q Consensus 303 ~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlv 382 (418) .++++++|++||+.|++ ...|++|||||+++|.++.++ + +|+|||||.|+| .|++++|||+| T Consensus 253 ~~l~~~~r~~Ld~~g~~--~v~I~~Sggi~~~~I~~l~~~--g--vD~~GvGt~l~~------------~~~ld~~~klv 314 (398) T 2i1o_A 253 EALIREVRWELALRGRS--DIKIMVSGGLDENTVKKLREA--G--AEAFGVGTSISS------------AKPFDFAMDIV 314 (398) T ss_dssp HHHHHHHHHHHHHTTCT--TSEEEEESSCCHHHHHHHHHT--T--CCEEEECHHHHT------------CCCCCEEEEEE T ss_pred HHHHHHHHHHHHHCCCC--CEEEEEECCCCHHHHHHHHHC--C--CCEEEECCCCCC------------CCCCCEEEEEE T ss_conf 99999999987546898--549999699999999999963--9--988974465056------------88786699999 Q ss_pred EECCCCEEEEECCCCCCC Q ss_conf 576811167326887524 Q gi|254780455|r 383 KANDKHAVKLSDDPAKTT 400 (418) Q Consensus 383 e~~g~P~~KlSd~~~K~t 400 (418) ++||+|++|.|++|||-. T Consensus 315 ~i~g~p~~K~~~~pG~k~ 332 (398) T 2i1o_A 315 EVNGKPETKRGKMSGRKN 332 (398) T ss_dssp EETTEECCCTTSCCSCEE T ss_pred EECCEEEEEECCCCCCCE T ss_conf 989986245147886504 No 9 >2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Probab=100.00 E-value=0 Score=421.42 Aligned_cols=313 Identities=15% Similarity=0.090 Sum_probs=256.7 Q ss_pred CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 95225656710012440117899999999984899659999996588755440000236999999997169998999999 Q gi|254780455|r 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL 80 (418) Q Consensus 1 m~~~~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL 80 (418) ||.++..++.-|.|.++||.|+++|+|++++++++..|+|++|+|+.+ +..+++|++|+++++++++.++++ T Consensus 7 m~~~~~a~~e~I~~g~~tD~Y~~~~~~il~~~~~~~~v~~e~~~r~~~-~~~~~~vlaGl~~~~~~l~~l~~~------- 78 (395) T 2i14_A 7 MKRFYIANEDEIKAGKTTDVYFLRTKKILEVKNIRKKVLADVTTTSLP-NNWRWGVLVGVEEVAKLLEGIPVN------- 78 (395) T ss_dssp CCSSSCCCHHHHHHTTTSBHHHHHHHHHHHHTTCCCEEEEEEECSCCG-GGCSCEECCCHHHHHHHHTTSSEE------- T ss_pred HHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-CCCCCEEECCHHHHHHHHHCCCCC------- T ss_conf 777527697784735044787999999999748998279999995277-678767981799999999619994------- Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 83777555557898899997508998416873399269998548778677888999999888887753134866799999 Q gi|254780455|r 81 VENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLY 160 (418) Q Consensus 81 ~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~ 160 (418) .+.-++...+++|+|+++|+|||.+++|+|+++|++|++.+.++|.+. T Consensus 79 ----------------------i~av~EG~~v~~g~pil~I~G~~~~~~~~Et~lLn~l~~~s~iAT~a~---------- 126 (395) T 2i14_A 79 ----------------------VYAMPEGTIFHPYEPVLQIEGDYADFGIYETALLGMLSQASGIATAAL---------- 126 (395) T ss_dssp ----------------------EEECCTTCEECTTSCSEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHH---------- T ss_pred ----------------------EEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH---------- T ss_conf ----------------------698179738659976999982799999999999999989999998799---------- Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 99999999877767426997599842443479788999999998421212012478899997289876752048987640 Q gi|254780455|r 161 AQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAA 240 (418) Q Consensus 161 ~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~ 240 (418) +. ...+.+.+++|||+||++|..+ + ...+|+++|||.||||+++++.|++|+.|||+|||||+|+ T Consensus 127 -----~~------~~~~~~~~~~~fgtRk~~p~~~---~-~~~~A~~~gG~~~ts~~l~~~~~~~~~~gt~~Hs~i~~~~ 191 (395) T 2i14_A 127 -----RI------KIAAKFKPVYSFGIRHMHPAIA---P-MIDRAAFIGGCDGVSGVLGAEMMGEKAVGTMPHALIITVG 191 (395) T ss_dssp -----HH------HHHTTTCCEEECGGGGSCGGGH---H-HHHHHHHHTTCSEESBHHHHHHHTCCCCCCCCHHHHHHHT T ss_pred -----HH------HHHHHCCCCCCCCCCCCCHHHH---H-HHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHCH T ss_conf -----99------9986296340188755797799---9-9535360388755562777976599741315556887050 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCH--HHHHHHHHHHHCCCCEEECCC-----CCHHHHHHHHHHH Q ss_conf 012203678654999999999963988-65986346898--999998997310024341288-----8878999999999 Q gi|254780455|r 241 AITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSFGT--DFFLEHAPSWMTQWKGFRHDS-----ASPIEGGEKIIAW 312 (418) Q Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~--~~~l~~~~~~~~~~~GVR~DS-----GD~~~~~~k~~~~ 312 (418) + +..||++|.+.||.+ ..++|+||+.. ..+...+.....+..|||+|| ||+.++++++|+. T Consensus 192 ~-----------~~~A~~~~~~~~~~~~~~i~lvd~~~~~~~~~~~~~~~~~~~~~~VRlDSg~~~~gd~~~l~~~~r~~ 260 (395) T 2i14_A 192 D-----------QVKAWKYFDEVIEEEVPRIALVDTFYDEKVEAVMAAEALGKKLFAVRLDTPSSRRGNFRKIIEEVRWE 260 (395) T ss_dssp C-----------HHHHHHHHHHHSCSSSCCEEECCSSBCHHHHHHHHHTTTGGGCCEEEECCCTTTCSCHHHHHHHHHHH T ss_pred H-----------HHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHH T ss_conf 6-----------99999999999764146434367752318779999997255564897888986444399999999998 Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEE Q ss_conf 99779881130899738989999999999724897378633464314656666665567773216898575768111673 Q gi|254780455|r 313 WKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKL 392 (418) Q Consensus 313 l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~Kl 392 (418) +|+.|++ . .+|++|||||+++|.++.+ .+|.|||||.+. ..|++++|||+++++|+|++|. T Consensus 261 ld~~g~~-~-v~I~~SggI~~~~i~~~~~-----~iD~~gvGt~l~------------~~~~ld~~~klv~i~g~p~~K~ 321 (395) T 2i14_A 261 LKVRGYD-W-VKIFVSGGLDEEKIKEIVD-----VVDAFGVGGAIA------------SAKPVDFALDIVEVEGKPIAKR 321 (395) T ss_dssp HHHTTCC-S-CEEEEESSCCHHHHHTTGG-----GCSEEEECHHHH------------TCCCCCCEEEEEEETTEECCCT T ss_pred HHCCCCC-C-EEEEEECCCCHHHHHHHHH-----HCCEEEECCCCC------------CCCCCCCEEEEEEECCEECCCC T ss_conf 6215898-5-6999979979999999996-----478975465226------------7887762646888899475555 Q ss_pred ECCCCC Q ss_conf 268875 Q gi|254780455|r 393 SDDPAK 398 (418) Q Consensus 393 Sd~~~K 398 (418) |..||| T Consensus 322 ~~~~G~ 327 (395) T 2i14_A 322 GKLSGR 327 (395) T ss_dssp TSCCSC T ss_pred CCCCCC T ss_conf 478866 No 10 >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} Probab=99.41 E-value=2.4e-11 Score=95.81 Aligned_cols=256 Identities=12% Similarity=-0.019 Sum_probs=160.8 Q ss_pred CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC Q ss_conf 99659999996588755440000236999999997169998999999837775555578988999975089984168733 Q gi|254780455|r 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK 113 (418) Q Consensus 34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~ 113 (418) .+..++..++.|.+ .+++|++...+.++.+-. +++| +-++.-.+. T Consensus 40 ~~~~~~a~i~ake~-------gvlaG~~~~~~i~~~~~~---~v~~-------------------------~~~dG~~v~ 84 (299) T 2jbm_A 40 GAGPSQAALWAKSP-------GVLAGQPFFDAIFTQLNC---QVSW-------------------------FLPEGSKLV 84 (299) T ss_dssp CSCEEEEEEEECSC-------EECCCHHHHHHHHHHTTC---EEEE-------------------------SSCTTCEEC T ss_pred CCCEEEEEEEECCC-------EEEECHHHHHHHHHHCCC---EEEE-------------------------EECCCCEEE T ss_conf 99718999998899-------799878999999996697---8999-------------------------966799885 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH Q ss_conf 99269998548778677888999999888887753134866799999999999998777674269975998424434797 Q gi|254780455|r 114 KGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSL 193 (418) Q Consensus 114 eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~ 193 (418) +|+++++++||.......|..+||+|+.+...+|.+ .+...++. ..+.++.=++||+.++- T Consensus 85 ~g~~I~~i~G~a~~il~~Er~~LN~L~~~SGIAT~t---------------~~~v~~~~----~~~~~~~i~~TRKt~Pg 145 (299) T 2jbm_A 85 PVARVAEVRGPAHCLLLGERVALNTLARCSGIASAA---------------AAAVEAAR----GAGWTGHVAGTRKTTPG 145 (299) T ss_dssp SSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH----HTTCCSEEECCSCCCTT T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH----CCCCCEEEEECCCCCCC T ss_conf 385799997079999999999999999876444445---------------89999973----37980599865513536 Q ss_pred HHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCC--CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-CCEE Q ss_conf 889999999984212120124788999972898--7675204898764001220367865499999999996398-8659 Q gi|254780455|r 194 TWQKWCIEALQEGIKDSFLGTSNALLAMNYKIN--AIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDD-NLLI 270 (418) Q Consensus 194 ~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~--~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~-~~~i 270 (418) . ..-.-+|...||+... ++|+. +.....| +.++++.. .+.+...+..+. ..-. T Consensus 146 ~----r~l~k~Av~~GGg~~H-------R~~L~d~vlikdnH--i~~~g~~~-----------~a~~~~~~~~~~~~~Ie 201 (299) T 2jbm_A 146 F----RLVEKYGLLVGGAASH-------RYDLGGLVMVKDNH--VVAAGGVE-----------KAVRAARQAADFALKVE 201 (299) T ss_dssp C----HHHHHHHHHHTTCBCC-------CCSTTSSEEECHHH--HHHHTSHH-----------HHHHHHHHHHTTTSCEE T ss_pred H----HHHHHHHHHHCCCCCE-------ECCCCCCCCCCCCH--HHHCCCHH-----------HHHHHHHHHCCCCEEEE T ss_conf 2----8999999986387524-------31576433014217--77628999-----------99999986316743789 Q ss_pred EEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEE Q ss_conf 86346898999998997310024341288887899999999999779881130899738989999999999724897378 Q gi|254780455|r 271 VLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMI 350 (418) Q Consensus 271 ~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~ 350 (418) .-+||+ +.+. .....+.++|++|..+|.. .+++++.+++.+ | ...|.+|+|+|++.+.+. +...+|. T Consensus 202 vEv~~~--~ea~---~a~~~g~d~I~LDn~s~e~-l~~~v~~l~~~~--~-~v~ieaSGGI~~~ni~~y----a~~GVD~ 268 (299) T 2jbm_A 202 VECSSL--QEAV---QAAEAGADLVLLDNFKPEE-LHPTATVLKAQF--P-SVAVEASGGITLDNLPQF----CGPHIDV 268 (299) T ss_dssp EEESSH--HHHH---HHHHTTCSEEEEESCCHHH-HHHHHHHHHHHC--T-TSEEEEESSCCTTTHHHH----CCTTCCE T ss_pred EECCCH--HHHH---HHHHCCCCEEEEECCCHHH-HHHHHHHHHCCC--C-CEEEEEECCCCHHHHHHH----HHCCCCE T ss_conf 704889--9999---9997299999980889999-999999984648--9-769999899999999999----9729899 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEE Q ss_conf 633464314656666665567773216898575768111673 Q gi|254780455|r 351 FGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKL 392 (418) Q Consensus 351 fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~Kl 392 (418) +++|. || .+.|++++-+++++.+|.|+.|+ T Consensus 269 is~G~-lt-----------~~a~~~D~sl~i~~~~~~p~~k~ 298 (299) T 2jbm_A 269 ISMGM-LT-----------QAAPALDFSLKLFAKEVAPVPKI 298 (299) T ss_dssp EECTH-HH-----------HSCCCCCEEEEEEEEC------- T ss_pred EECCH-HH-----------CCCCCCCEEEEEEECCCCCCCCC T ss_conf 98296-54-----------59986431799775588777777 No 11 >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Probab=99.25 E-value=6.4e-10 Score=86.05 Aligned_cols=265 Identities=14% Similarity=0.061 Sum_probs=165.5 Q ss_pred CCCHHHHCCHHHHH--HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC Q ss_conf 10012440117899--9999999848996599999965887554400002369999999971699989999998377755 Q gi|254780455|r 10 PIISSLLDTDFYKI--LMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYG 87 (418) Q Consensus 10 piI~SlLdTD~Ykl--tM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~ 87 (418) .+|+..|.-|.... |- +. ...+.+++..++.|.+ .+++|+++..+.++.+-. ++. T Consensus 5 ~~i~~~l~ED~~~gD~Tt-~~---~~~~~~~~a~i~~r~~-------gv~~G~~~~~~~~~~~~~---~v~--------- 61 (273) T 2b7n_A 5 TFLERALKEDLGHGDLFE-RV---LEKDFKATAFVRAKQE-------GVFSGEKYALELLEMTGI---ECV--------- 61 (273) T ss_dssp HHHHHHHHHHHTTCCSHH-HH---CSCCCEEEEEEEESSC-------EECCCHHHHHHHHHHTTC---EEE--------- T ss_pred HHHHHHHHCCCCCCCCCC-CC---CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHHCC---CCE--------- T ss_conf 999999960799986512-23---6999879999996899-------999739999999986155---308--------- Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 55578988999975089984168733992699985487786778889999998888877531348667999999999999 Q gi|254780455|r 88 KKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKL 167 (418) Q Consensus 88 ~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (418) .+-++.-.+.+|+++++|+||..+....|+.+||+|+.+...+|. ..+. T Consensus 62 ----------------~~~~dG~~v~~g~~Il~i~G~~~~il~~Er~~Ln~L~~~SGIAT~---------------t~~~ 110 (273) T 2b7n_A 62 ----------------QTIKDKERFKPKDALMEIRGDFSMLLKVERTLLNLLQHSSGIATL---------------TSRF 110 (273) T ss_dssp ----------------EECCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH T ss_pred ----------------EEECCCCEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH T ss_conf ----------------973376375089899999860999999999999999999999999---------------9999 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH Q ss_conf 98777674269975998424434797889999999984212120124788999972898767520489876400122036 Q gi|254780455|r 168 WSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDI 247 (418) Q Consensus 168 ~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~ 247 (418) ..+ +.+.++.-|+||+.++-. -.-..+|...||..+.+ +|+.......+..+-+++... T Consensus 111 v~~------a~~~~i~i~~TRKt~Pg~----r~l~k~Av~~GGg~~hR-------~~l~d~ilikdnHi~~~g~~~---- 169 (273) T 2b7n_A 111 VEA------LNSHKVRLLDTRKTRPLL----RIFEKYSVLNGGASNHR-------LGLDDALMLKDTHLRHVKDLK---- 169 (273) T ss_dssp HHH------HCCSSSEEECCSCCCTTC----HHHHHHHHHTTTCCCCC-------SSTTTCEEECHHHHTTCSSHH---- T ss_pred HHH------HCCCCEEEEECCCCCCCH----HHHHHHHHHHCCCCCCC-------CCCCCCCCCCHHHHHHCCCHH---- T ss_conf 887------259965997268687356----89999999966875645-------676543410522677626999---- Q ss_pred HHHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 78654999999999963988-65986346898999998997310024341288887899999999999779881130899 Q gi|254780455|r 248 ETQNAPYQMMQQWNRLYDDN-LLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLV 326 (418) Q Consensus 248 ~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv 326 (418) .+.....+..|.. .-..-+||+ +.+... ...+.+.|++|..+|.. .+++++..+... | ...|. T Consensus 170 -------~~~~~~~~~~~~~~~I~vEv~~~--~ea~~a---~~~g~d~i~LDn~~~~~-~~~~v~~~~~~~--~-~v~ie 233 (273) T 2b7n_A 170 -------SFLTHARKNLPFTAKIEIECESF--EEAKNA---MNAGADIVMCDNLSVLE-TKEIAAYRDAHY--P-FVLLE 233 (273) T ss_dssp -------HHHHHHGGGSCTTCCEEEEESSH--HHHHHH---HHHTCSEEEEETCCHHH-HHHHHHHHHHHC--T-TCEEE T ss_pred -------HHHHHHHHHCCCCCEEEEEECCH--HHHHHH---HHCCCCEEECCCCCHHH-HHHHHHHHHCCC--C-CEEEE T ss_conf -------99999887479871599997689--999999---87488588318989999-999999973769--9-66999 Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 7389899999999997248973786334643146566666655677732168985 Q gi|254780455|r 327 FSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV 381 (418) Q Consensus 327 ~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl 381 (418) +|+|+|++.+.+.- ...+|.+++|. ||. +.|++++-.++ T Consensus 234 aSGGI~~~~i~~ya----~~GVD~isvg~-lt~-----------~a~~~Disl~i 272 (273) T 2b7n_A 234 ASGNISLESINAYA----KSGVDAISVGA-LIH-----------QATFIDMHMKM 272 (273) T ss_dssp EESSCCTTTHHHHH----TTTCSEEECTH-HHH-----------TCCCCCEEEEC T ss_pred EECCCCHHHHHHHH----HCCCCEEECCH-HHC-----------CCCCCCEEEEC T ss_conf 97999999999999----76999998586-545-----------99662337855 No 12 >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Probab=98.71 E-value=3.5e-06 Score=60.43 Aligned_cols=270 Identities=14% Similarity=0.043 Sum_probs=153.7 Q ss_pred CCCCHHHHCCHH-H--HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC Q ss_conf 710012440117-8--9999999998489965999999658875544000023699999999716999899999983777 Q gi|254780455|r 9 DPIISSLLDTDF-Y--KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF 85 (418) Q Consensus 9 ~piI~SlLdTD~-Y--kltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~ 85 (418) ..+|+..|.-|. | -+|.. +. .-++..++.+++.|.+ .+++|++.....++.+ +... T Consensus 11 ~~~i~~al~ED~~~g~D~Tt~-~l--~~~~~~~~a~i~are~-------gV~~G~~~a~~~f~~l---------~~~~-- 69 (284) T 1qpo_A 11 RAAIARGLDEDLRYGPDVTTL-AT--VPASATTTASLVTREA-------GVVAGLDVALLTLNEV---------LGTN-- 69 (284) T ss_dssp HHHHHHHHHHHHTTCCCHHHH-HH--SCTTCEEEEEEEESSC-------EECCCHHHHHHHHHHH---------HCTT-- T ss_pred HHHHHHHHHHCCCCCCCCCCC-CC--CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHHH---------CCCC-- T ss_conf 999999998569999883532-21--7899759999996899-------8998099999999985---------5666-- Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 55555789889999750899841687339926999854877867788899999988888775313486679999999999 Q gi|254780455|r 86 YGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKK 165 (418) Q Consensus 86 ~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~ 165 (418) + ++-...-++.-.+.+|+++++|+||.......|..+||++..+...+|.+ . T Consensus 70 --~-----------~~v~~~~~dG~~v~~g~~il~i~G~~~~il~~ER~~LN~L~~~SGIAT~T---------------~ 121 (284) T 1qpo_A 70 --G-----------YRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATAT---------------A 121 (284) T ss_dssp --S-----------EEEEEECCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH---------------H T ss_pred --C-----------EEEEEECCCCCEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------H T ss_conf --7-----------37988828899986486799999889999999999999999998999999---------------8 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC Q ss_conf 99987776742699759984244347978899999999842121201247889999728987675204898764001220 Q gi|254780455|r 166 KLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRT 245 (418) Q Consensus 166 ~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~ 245 (418) +...+ +.+.+..=++||+.++-. -.-..+|...||+.. +++++...--.-.-.+-+++++. T Consensus 122 ~~v~~------~~~~~~~i~~TRKt~Pg~----r~~~k~Av~~GGg~~-------HR~~L~d~ilikdNHi~~~g~i~-- 182 (284) T 1qpo_A 122 AWVDA------VRGTKAKIRDTRKTLPGL----RALQKYAVRTGGGVN-------HRLGLGDAALIKDNHVAAAGSVV-- 182 (284) T ss_dssp HHHHH------TTTSSCEEECCSCCCTTC----HHHHHHHHHHTTCBC-------CCCSSSSSEEECHHHHHHHSSHH-- T ss_pred HHHHH------CCCCCCEEEECCCCCCCH----HHHHHHHHHHCCCCC-------CCCCCCCCEEEECCEEEECCCHH-- T ss_conf 88753------157885698346666465----899999999759744-------56765554155345100047289-- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 36786549999999999639886598634689899999899731002434128888789999999999977988113089 Q gi|254780455|r 246 DIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFL 325 (418) Q Consensus 246 ~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~i 325 (418) .+.....+..|...-..-+++. .. .......+.+.|.+|-..|... +++++..+... | ...| T Consensus 183 ---------~~~~~~~~~~~~~~i~vEv~~~--~e---~~~a~~~gad~imLDn~~pe~~-~~~v~~~~~~~--~-~v~i 244 (284) T 1qpo_A 183 ---------DALRAVRNAAPDLPCEVEVDSL--EQ---LDAVLPEKPELILLDNFAVWQT-QTAVQRRDSRA--P-TVML 244 (284) T ss_dssp ---------HHHHHHHHHCTTSCEEEEESSH--HH---HHHHGGGCCSEEEEETCCHHHH-HHHHHHHHHHC--T-TCEE T ss_pred ---------HHHHHHHHHCCCCCEEEEECCH--HH---HHHHHHHCCCEEEECCCCHHHH-HHHHHHHHCCC--C-CEEE T ss_conf ---------9999999848998739998149--98---8888751332899568897999-99999973769--9-4799 Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 9738989999999999724897378633464314656666665567773216898 Q gi|254780455|r 326 VFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCK 380 (418) Q Consensus 326 v~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyK 380 (418) .+|+|+|++.+.+.-+ ..+|.+++|. +| .+.|++++-.+ T Consensus 245 eaSGGI~~~ni~~ya~----~GVD~Is~g~-lt-----------~~a~~~D~sld 283 (284) T 1qpo_A 245 ESSGGLSLQTAATYAE----TGVDYLAVGA-LT-----------HSVRVLDIGLD 283 (284) T ss_dssp EEESSCCTTTHHHHHH----TTCSEEECGG-GT-----------SSBCCCCEEEE T ss_pred EEECCCCHHHHHHHHH----CCCCEEECCH-HH-----------CCCCCCCEEEE T ss_conf 9989998999999986----6989998396-75-----------59987042864 No 13 >1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Probab=98.65 E-value=4.9e-06 Score=59.40 Aligned_cols=204 Identities=12% Similarity=0.036 Sum_probs=118.5 Q ss_pred CEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 16873399269998548778677888999999888887753134866799999999999998777674269975998424 Q gi|254780455|r 108 YDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGT 187 (418) Q Consensus 108 ~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~ 187 (418) +.-.+.+|+++++++||.......|..+||++..+...+|. ..+...+ +.+.++. +| T Consensus 79 dG~~v~~g~~i~~i~G~~~~il~~ER~~LN~L~~~SGIAT~---------------T~~~v~~------~~~~~i~--~T 135 (285) T 1o4u_A 79 DGEYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATT---------------TRRFAEK------LKHAKIA--AT 135 (285) T ss_dssp TTCEEESCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHT------CSSSEEE--CC T ss_pred CCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH------HCCCCCC--CC T ss_conf 99882178378999966899999999999999988646579---------------9999998------6457766--43 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-C Q ss_conf 434797889999999984212120124788999972898767520489876400122036786549999999999639-8 Q gi|254780455|r 188 RRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYD-D 266 (418) Q Consensus 188 RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp-~ 266 (418) |..++-. -.-..+|...||.....+ |+...--.-...+-++++.. .+.....+..| . T Consensus 136 RKt~Pgl----R~l~k~Av~~GGg~~HR~-------gL~d~iLIkdNHi~~~g~~~-----------~~~~~~~~~~~~~ 193 (285) T 1o4u_A 136 RKILPGL----GVLQKIAVVHGGGDPHRL-------DLSGCVMIKDNHLKMYGSAE-----------RAVQEVRKIIPFT 193 (285) T ss_dssp SCCCTTT----HHHHHHHHHHHTCC---------------CEEECHHHHHHHSSHH-----------HHHHHHHTTSCTT T ss_pred CCCCCCH----HHHHHHHHHHHCCCCCCC-------CCCCCEEECHHHHHHCCCHH-----------HHHHHHHHHCCCC T ss_conf 5178354----899999998607003457-------67712577243464417877-----------8999888756888 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC Q ss_conf 86598634689899999899731002434128888789999999999977988113089973898999999999972489 Q gi|254780455|r 267 NLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENR 346 (418) Q Consensus 267 ~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~ 346 (418) ..-..-++|. +.+ ......+.++|++|..+|.. .+++++.++..+ |+ ..|.+|+|+|++.+.+. +.. T Consensus 194 ~~i~vEv~~l--~ea---~~a~~~g~d~I~LDn~~~~~-i~~~v~~l~~~~--~~-v~ieaSGGI~~~ni~~y----a~~ 260 (285) T 1o4u_A 194 TKIEVEVENL--EDA---LRAVEAGADIVMLDNLSPEE-VKDISRRIKDIN--PN-VIVEVSGGITEENVSLY----DFE 260 (285) T ss_dssp SCEEEEESSH--HHH---HHHHHTTCSEEEEESCCHHH-HHHHHHHHHHHC--TT-SEEEEEECCCTTTGGGG----CCT T ss_pred CEEEEEECHH--HHH---HHHHHCCCCEEECCCCCHHH-HHHHHHHHHHHC--CC-EEEEEECCCCHHHHHHH----HHC T ss_conf 6279973329--999---99997699999428998788-999999999758--97-79999899979999999----865 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 73786334643146566666655677732168985 Q gi|254780455|r 347 VQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV 381 (418) Q Consensus 347 ~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl 381 (418) .+|.+.+|.-- .+.|++++-.++ T Consensus 261 GVD~Is~g~lt------------~~a~~~D~sl~i 283 (285) T 1o4u_A 261 TVDVISSSRLT------------LQEVFVDLSLEI 283 (285) T ss_dssp TCCEEEEGGGT------------SSCCCCCEEEEE T ss_pred CCCEEECCHHH------------CCCCCCCEEEEE T ss_conf 98999869776------------599862138998 No 14 >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Probab=98.56 E-value=5.2e-06 Score=59.21 Aligned_cols=243 Identities=8% Similarity=-0.043 Sum_probs=140.0 Q ss_pred CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC---CCCCEE Q ss_conf 99659999996588755440000236999999997169998999999837775555578988999975089---984168 Q gi|254780455|r 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQ---LPEYDL 110 (418) Q Consensus 34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~---f~~~~~ 110 (418) ++..+...++.|.. .+++|+...-.-++.+ . .+.+ +-.+.- T Consensus 53 ~~~~~~a~i~ake~-------gVl~G~~~~~~v~~~~----------~-------------------~~~~v~~~~~dG~ 96 (298) T 3gnn_A 53 DGAPRRARVIVRED-------AVLCGVPWFDAVVRAV----------D-------------------PSIEVDWRHREGD 96 (298) T ss_dssp CCSEEEEEEEECSC-------EECCCHHHHHHHHHHH----------C-------------------TTCEEEESSCTTC T ss_pred CCCEEEEEEEECCC-------EEEECHHHHHHHHHHH----------C-------------------CCCEEEEECCCCC T ss_conf 99769999997899-------8998689999999983----------9-------------------7626876648898 Q ss_pred EECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC Q ss_conf 73399269998548778677888999999888887753134866799999999999998777674269975998424434 Q gi|254780455|r 111 SHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRR 190 (418) Q Consensus 111 ~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~ 190 (418) .+.+|+++++++||.......|..+||++..+...+|.+ .+...+ +.+.++.=++||.. T Consensus 97 ~v~~g~~i~~i~G~~~~il~~ER~~LN~L~~~SGIAT~T---------------~~~v~~------~~~~~~~i~~TRKt 155 (298) T 3gnn_A 97 RMSADSTVCELRGPARALLTAERNALNFLQLLSGVASAT---------------RQYVDR------IADTRARILDTRKT 155 (298) T ss_dssp EECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH------TTTSSCCEECCSCC T ss_pred EEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH------HCCCCCEEEECCCC T ss_conf 963798899999679999999999999999998899999---------------999886------35987557635755 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 79788999999998421212012478899997289876752048987640012203678654999999999963988659 Q gi|254780455|r 191 HSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLI 270 (418) Q Consensus 191 ~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i 270 (418) ++-. ..-..+|...||....+ +|+...-..-+..+.+++... ++.+...+..|...-. T Consensus 156 ~Pg~----r~l~k~Av~~GGg~~HR-------~gL~d~vlikdNHi~~~g~i~-----------~ai~~~~~~~~~~~I~ 213 (298) T 3gnn_A 156 LPGL----RLAQKYAVRVGGGANQR-------LALYAGILIKENHIAAAGGVG-----------EALDAAFALNAEVPVQ 213 (298) T ss_dssp CTTC----HHHHHHHHHHTTCCCC--------------------------CHH-----------HHHHHHHHHC--CCCE T ss_pred CHHH----HHHHHHHHHHCCCCCCC-------CCCCCCCCCCCCHHHHHCCHH-----------HHHHHHHHHCCCCCEE T ss_conf 2342----78988885652734345-------776522514555788854078-----------8877677643686167 Q ss_pred EEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEE Q ss_conf 86346898999998997310024341288887899999999999779881130899738989999999999724897378 Q gi|254780455|r 271 VLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMI 350 (418) Q Consensus 271 ~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~ 350 (418) .-+||. +. .......+.+.|.+|...|... +++.+..+ ++ ..|-+|+|+|++.+.+.-+. .+|. T Consensus 214 VEv~~~--~e---~~~a~~~g~d~I~LDn~s~~~~-~~~v~~~~-----~~-~~ieaSGGI~~~ni~~yA~~----GVD~ 277 (298) T 3gnn_A 214 IEVETL--DQ---LRTALAHGARSVLLDNFTLDMM-RDAVRVTE-----GR-AVLEVSGGVNFDTVRAIAET----GVDR 277 (298) T ss_dssp EEESSH--HH---HHHHHHTTCEEEEEESCCHHHH-HHHHHHHT-----TS-EEEEEESSCSTTTHHHHHHT----TCSE T ss_pred EECCCH--HH---HHHHHHCCCCEEEECCCCHHHH-HHHHHHHC-----CC-EEEEEECCCCHHHHHHHHHC----CCCE T ss_conf 851889--99---9999965987785458999999-99999858-----96-89999789999999999974----9999 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE Q ss_conf 633464314656666665567773216898575 Q gi|254780455|r 351 FGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTK 383 (418) Q Consensus 351 fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve 383 (418) +++|.-- .+.|++++-.+++| T Consensus 278 Is~G~lt------------~sa~~~D~sl~ive 298 (298) T 3gnn_A 278 ISIGALT------------KDVRATDYSMRIVE 298 (298) T ss_dssp EECGGGG------------TSCCCCCEEEEEC- T ss_pred EECCHHH------------CCCCCCCEEEEEEC T ss_conf 9869765------------59987121589759 No 15 >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Probab=98.39 E-value=0.00011 Score=50.08 Aligned_cols=244 Identities=11% Similarity=-0.048 Sum_probs=139.2 Q ss_pred CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC Q ss_conf 99659999996588755440000236999999997169998999999837775555578988999975089984168733 Q gi|254780455|r 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK 113 (418) Q Consensus 34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~ 113 (418) ++..++..++.|.+ .|++|++..-+-++.+ ..- +.---.-.+.-.+. T Consensus 75 ~~~~~~a~iiare~-------gV~~G~~~~~~vf~~l-------------~~~-------------~~v~~~~~dG~~v~ 121 (320) T 3paj_A 75 ADRISTATIITREA-------GVFCGQLWADEVFKQL-------------GGQ-------------VSIEWHVQDGDTLT 121 (320) T ss_dssp TTCEEEEEEEESSC-------EECCCHHHHHHHHHHT-------------TSC-------------CEEEESSCTTCEEC T ss_pred CCCEEEEEEEECCC-------EEEECHHHHHHHHHHH-------------CCC-------------CEEEEECCCCCEEE T ss_conf 89779999997899-------9998589999999983-------------997-------------46988818999873 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH Q ss_conf 99269998548778677888999999888887753134866799999999999998777674269975998424434797 Q gi|254780455|r 114 KGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSL 193 (418) Q Consensus 114 eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~ 193 (418) +|+++++++||.......|..+||++..+...+|.+ .+...++ .....++ ++||..++- T Consensus 122 ~g~~i~~i~G~a~~il~~ER~~LN~Lq~lSGIAT~T---------------~~~v~~~----~~~~~~i--~dTRKT~PG 180 (320) T 3paj_A 122 PNQTLCTLTGPARILLTGERNAMNFIQTLSGCATAT---------------ARYVQEL----KGTQCRL--LDTRKTIPG 180 (320) T ss_dssp TTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH----TTSSCEE--ECCSCCCTT T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH----CCCCCEE--EECCCCCCC T ss_conf 896899981318899999999999998886687999---------------9998762----4987169--526744772 Q ss_pred HHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 88999999998421212012478899997289876752048987640012203678654999999999963988659863 Q gi|254780455|r 194 TWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLP 273 (418) Q Consensus 194 ~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~ 273 (418) . -.-..+|...||... .++|+...--.-.-.+.++++.. .+.....+..|...-..-+ T Consensus 181 l----R~l~k~AV~~GGG~n-------HR~gL~d~iLIKdNHi~~~g~i~-----------~a~~~~~~~~p~~~IeVEv 238 (320) T 3paj_A 181 L----RSALKYAVACGGGYN-------HRIGVFDAYLIKENHIIACGGIR-----------QAISTAKQLNPGKPVEVET 238 (320) T ss_dssp C----HHHHHHHHHHTTCBC-------CCSSSSSCEEECHHHHHHHTSHH-----------HHHHHHHHHSTTSCEEEEE T ss_pred H----HHHHHHHHHHCCCCC-------CCCCCCHHHCCCCCHHHHHCCHH-----------HHHHHHHHHCCCCEEEEEC T ss_conf 5----799999999658656-------55663265514420676524089-----------9999999748997799932 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 46898999998997310024341288887899999999999779881130899738989999999999724897378633 Q gi|254780455|r 274 DSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGW 353 (418) Q Consensus 274 DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGI 353 (418) ++. +.. ......+.+.|.+|-..|.... ++++. .+ ++ ..|-+|+|+|++.+.+.- ...+|.+.+ T Consensus 239 ~~l--~e~---~ea~~agaDiImLDn~s~e~lk-~aV~~---~~--~~-v~lEaSGGI~~~ni~~yA----~tGVD~Isv 302 (320) T 3paj_A 239 ETL--AEL---EEAISAGADIIMLDNFSLEMMR-EAVKI---NA--GR-AALENSGNITLDNLKECA----ETGVDYISV 302 (320) T ss_dssp SSH--HHH---HHHHHTTCSEEEEESCCHHHHH-HHHHH---HT--TS-SEEEEESSCCHHHHHHHH----TTTCSEEEC T ss_pred CCH--HHH---HHHHHCCCCEEEECCCCHHHHH-HHHHH---HC--CC-EEEEEECCCCHHHHHHHH----HCCCCEEEC T ss_conf 868--999---9998538888986589999999-99997---58--97-799997899899999999----819899987 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 4643146566666655677732168985 Q gi|254780455|r 354 GTNLTNDFDGCTPYQNLQTEKLQIVCKV 381 (418) Q Consensus 354 GT~Lt~d~~~~~~~~~~~~~~l~~VyKl 381 (418) |.- ..+.|++++-+++ T Consensus 303 Gal------------t~~a~~lDisl~i 318 (320) T 3paj_A 303 GAL------------TKHLKALDLSMRF 318 (320) T ss_dssp THH------------HHSBCCCCEEEEE T ss_pred CHH------------HCCCCCCCEEEEE T ss_conf 976------------6699654227895 No 16 >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Probab=98.35 E-value=8.3e-05 Score=50.98 Aligned_cols=241 Identities=13% Similarity=0.037 Sum_probs=135.5 Q ss_pred CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC---CCCCEE Q ss_conf 99659999996588755440000236999999997169998999999837775555578988999975089---984168 Q gi|254780455|r 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQ---LPEYDL 110 (418) Q Consensus 34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~---f~~~~~ 110 (418) ++.++...++.|.+ .+++|++..-+-+.. |-. .+.+ +..+.- T Consensus 51 ~~~~~~a~i~are~-------gv~~G~~~~~~if~~----------l~~------------------~~~~v~~~~~dG~ 95 (296) T 1qap_A 51 ADTQAHATVITRED-------GVFCGKRWVEEVFIQ----------LAG------------------DDVRLTWHVDDGD 95 (296) T ss_dssp TTCEECCEEEESSC-------EECCCHHHHHHHHHH----------HHT------------------TSSEEEESCCTTC T ss_pred CCCEEEEEEEECCC-------EEEECHHHHHHHHHH----------CCC------------------CCEEEEEECCCCC T ss_conf 99779999997899-------899888999999997----------289------------------9759999648985 Q ss_pred EECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC Q ss_conf 73399269998548778677888999999888887753134866799999999999998777674269975998424434 Q gi|254780455|r 111 SHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRR 190 (418) Q Consensus 111 ~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~ 190 (418) .+.+|+++++++||.......|..+||+|..+...+|. ..+...+ +.+.++.=++||+. T Consensus 96 ~v~~g~~i~~i~G~~~~il~~ER~~ln~L~~~SGIAT~---------------T~~~v~~------~~~~~~~i~~TRKt 154 (296) T 1qap_A 96 AIHANQTVFELQGPARVLLTGERTALNFVQTLSGVASE---------------VRRYVGL------LAGTQTQLLDTRKT 154 (296) T ss_dssp EECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHT------TTTSSCEEECCSCC T ss_pred EEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH------HCCCCEEEEECCCC T ss_conf 88718657999955899999999999999898767489---------------9999998------45997399835875 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 79788999999998421212012478899997289876752048987640012203678654999999999963988659 Q gi|254780455|r 191 HSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLI 270 (418) Q Consensus 191 ~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i 270 (418) ++... .-..+|...||.... ++|+...--.-...+.+.+.+. .++.......|...-. T Consensus 155 ~Pg~r----~l~k~Av~~GGg~~H-------R~~Lsd~ilikdNHi~~~g~~~-----------~~i~~~~~~~~~~~I~ 212 (296) T 1qap_A 155 LPGLR----TALKYAVLCGGGANH-------RLGLTDAFLIKENHIIASGSVR-----------QAVEKAFWLHPDVPVE 212 (296) T ss_dssp CTTCH----HHHHHHHHHHTCBCC-------CSSSSSCEEECHHHHHHHSSHH-----------HHHHHHHHHSTTSCEE T ss_pred CCCHH----HHHHHHHHHCCCCCC-------CCCCCHHEEECCCCCCCCCCHH-----------HHHHHHHHHCCCCEEE T ss_conf 63279----999999997498543-------7886244165367414576277-----------8899999738875499 Q ss_pred EEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEE Q ss_conf 86346898999998997310024341288887899999999999779881130899738989999999999724897378 Q gi|254780455|r 271 VLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMI 350 (418) Q Consensus 271 ~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~ 350 (418) .-++|. ..+.. ....+.+.|.+|-.+|..+.+ +++ . ++|+ ..|.+|+|+|++.+.+.-+ ..+|. T Consensus 213 VEv~~~--~~~~~---a~~~g~D~I~lDn~~~~~l~~-~V~---~--~~~~-v~ieaSGGI~~~ni~~ya~----~GVD~ 276 (296) T 1qap_A 213 VEVENL--DELDD---ALKAGADIIMLDNFNTDQMRE-AVK---R--VNGQ-ARLEVSGNVTAETLREFAE----TGVDF 276 (296) T ss_dssp EEESSH--HHHHH---HHHTTCSEEEESSCCHHHHHH-HHH---T--TCTT-CCEEECCCSCHHHHHHHHH----TTCSE T ss_pred EECHHH--HHHHH---HHHCCCCEEEECCCCHHHHHH-HHH---H--HCCC-EEEEEECCCCHHHHHHHHH----CCCCE T ss_conf 833278--87777---773699799864899999999-999---8--5796-7999979999999999997----69899 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 633464314656666665567773216898 Q gi|254780455|r 351 FGWGTNLTNDFDGCTPYQNLQTEKLQIVCK 380 (418) Q Consensus 351 fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyK 380 (418) +++|. || .+.|++++-++ T Consensus 277 Is~g~-lt-----------~~a~~~Disl~ 294 (296) T 1qap_A 277 ISVGA-LT-----------KHVRALDLSMR 294 (296) T ss_dssp EECSH-HH-----------HEEECCCEEEE T ss_pred EECCH-HH-----------CCCCCCCCEEE T ss_conf 98285-54-----------69966361583 No 17 >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Probab=98.33 E-value=0.00012 Score=49.91 Aligned_cols=270 Identities=13% Similarity=-0.005 Sum_probs=151.6 Q ss_pred CCCCHHHHCCHHH---HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC Q ss_conf 7100124401178---9999999998489965999999658875544000023699999999716999899999983777 Q gi|254780455|r 9 DPIISSLLDTDFY---KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF 85 (418) Q Consensus 9 ~piI~SlLdTD~Y---kltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~ 85 (418) +.+|+..|.-|+. -+|. ++. .++..+...+..|.+ .+++|+...-+.++.+- .++ T Consensus 27 ~~~i~~aL~ED~g~~gD~Tt-~~l---~~~~~~~a~i~are~-------gv~~G~~~~~~v~~~~~---~~~-------- 84 (300) T 3l0g_A 27 SEIIHNALKEDLGDKGDITT-NSI---LINEKVNFAINTREN-------LVVCGIPILEEVFNMNK---EHV-------- 84 (300) T ss_dssp HHHHHHHHHHHHTTTCCHHH-HHH---CSSCEEEEEEEESSC-------EECCCHHHHHHHHHHTT---TTE-------- T ss_pred HHHHHHHHHHHCCCCCCCCC-CCC---CCCCEEEEEEEECCC-------EEEECHHHHHHHHHHHC---CCE-------- T ss_conf 99999999977889999050-333---889747999997899-------79987999999999849---967-------- Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 55555789889999750899841687339926999854877867788899999988888775313486679999999999 Q gi|254780455|r 86 YGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKK 165 (418) Q Consensus 86 ~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~ 165 (418) +-.-+-.+.-.+.+|+++++++||.......|..+||++..+...+| ... T Consensus 85 ---------------~~~~~~~dG~~v~~g~~i~~i~G~a~~il~~ER~~LN~L~~~SGIAT---------------~T~ 134 (300) T 3l0g_A 85 ---------------KYEIHKKDGDITGKNSTLVSGEALAIYLLPIERVILNFIQHASGIAS---------------ITR 134 (300) T ss_dssp ---------------EEEECCCTTCEECSSCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHH---------------HHH T ss_pred ---------------EEEEEECCCCEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH T ss_conf ---------------99998179996212400899940799999999999999999999999---------------999 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC Q ss_conf 99987776742699759984244347978899999999842121201247889999728987675204898764001220 Q gi|254780455|r 166 KLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRT 245 (418) Q Consensus 166 ~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~ 245 (418) +...+ +.+.++.=++||..++-. -.-..+|...||.... ++|+...=-.=-..+-+++.. T Consensus 135 ~~v~~------~~~~~~~i~~TRKT~PGl----R~l~k~Av~~GGg~~H-------R~~L~d~iLikdNHi~~~g~~--- 194 (300) T 3l0g_A 135 QFVDE------VSGTKVKIRSTRKTTPGL----RMLDKYSVCIGGGESY-------RDNLCDGVLIKDNHIASCGSI--- 194 (300) T ss_dssp HHHHH------TTTSSCEEECCSCCCTTC----HHHHHHHHHHTTCBCS-------CSSTTSCEEECHHHHHHHSCH--- T ss_pred HHHHH------HCCCCCEEECCCCCCCCH----HHHHHHHHHHCCCCCC-------CCCCCHHHEECCCHHHHCCCH--- T ss_conf 99998------469984660277347427----9999999996698751-------476434440354335430528--- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 36786549999999999639886598634689899999899731002434128888789999999999977988113089 Q gi|254780455|r 246 DIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFL 325 (418) Q Consensus 246 ~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~i 325 (418) ..+.....+..|...-..=+|| .+... .....+.+.|.+|-..|... +++++.. + ++ ..| T Consensus 195 --------~~ai~~~~~~~~~~~IeVEv~~--~~~~~---~a~~~gad~ImLDn~~~~~~-~~~v~~i---~--~~-v~i 254 (300) T 3l0g_A 195 --------TLAIQRLRKNLKNEYIAIECDN--ISQVE---ESLSNNVDMILLDNMSISEI-KKAVDIV---N--GK-SVL 254 (300) T ss_dssp --------HHHHHHHHHHSSSCCEEEEESS--HHHHH---HHHHTTCSEEEEESCCHHHH-HHHHHHH---T--TS-SEE T ss_pred --------HHHHHHHHHHCCCCEEEEEECC--HHHHH---HHHHCCCEEEECCCCCHHHH-HHHHHHH---C--CC-EEE T ss_conf --------9999999974898629999376--99988---76414864886089998999-9999985---7--96-799 Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC Q ss_conf 9738989999999999724897378633464314656666665567773216898575768 Q gi|254780455|r 326 VFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKAND 386 (418) Q Consensus 326 v~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g 386 (418) .+|+|++++.+.+.- ...+|.+++|. .-.+.|++++-.++-..|+ T Consensus 255 eaSGGI~~~ni~~yA----~~GVD~IS~G~------------lt~sa~~~D~sl~Ie~~~~ 299 (300) T 3l0g_A 255 EVSGCVNIRNVRNIA----LTGVDYISIGC------------ITNSFQNKDIGLDIEYNNN 299 (300) T ss_dssp EEESSCCTTTHHHHH----TTTCSEEECGG------------GTSSCCCCCEEEEEC---- T ss_pred EEECCCCHHHHHHHH----HCCCCEEECCH------------HHCCCCCCCEEEEEEECCC T ss_conf 997999999999999----75999998697------------6669976572899770689 No 18 >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Probab=98.11 E-value=0.00014 Score=49.42 Aligned_cols=248 Identities=15% Similarity=0.035 Sum_probs=131.9 Q ss_pred CCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC Q ss_conf 99659999996588755440000236999999997169998999999837775555578988999975089984168733 Q gi|254780455|r 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK 113 (418) Q Consensus 34 ~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~ 113 (418) ++..+...++.|.+ .+++|++.....++.+-. +++|+ + .+.-.+. T Consensus 36 ~~~~~~a~i~ake~-------gv~~G~~~~~~if~~~~~---~v~~~------------------------~-~dG~~v~ 80 (294) T 3c2e_A 36 GSDLKEANLYCKQD-------GMLCGVPFAQEVFNQCEL---QVEWL------------------------F-KEGSFLE 80 (294) T ss_dssp CSCEEEEEEEECSS-------EECCCHHHHHHHHHHTTC---EEEES------------------------S-CTTCEEC T ss_pred CCCCEEEEEEECCC-------CEEECHHHHHHHHHHCCC---EEEEE------------------------E-ECCCEEC T ss_conf 88844999998899-------299679999999997498---18999------------------------8-2598850 Q ss_pred CCC------EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 992------69998548778677888999999888887753134866799999999999998777674269975998424 Q gi|254780455|r 114 KGQ------YVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGT 187 (418) Q Consensus 114 eg~------~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~ 187 (418) +|+ ++++++||.......|..+||++..+...+|.+ .++..++. ..+.++.=++| T Consensus 81 ~g~~~~~~~vi~~i~G~~~~il~~ER~~LN~L~~~SGIAT~t---------------~~~v~~~~----~~~~~~~i~~T 141 (294) T 3c2e_A 81 PSKNDSGKIVVAKITGPAKNILLAERTALNILSRSSGIATAS---------------HKIISLAR----STGYKGTIAGT 141 (294) T ss_dssp GGGSSSSCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH----HTTCCSEEECC T ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH----CCCCCCEEEEC T ss_conf 343677666999993548999999999999999988999999---------------99999875----16986479734 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 4347978899999999842121201247889999728987--67520489876400122036786549999999999639 Q gi|254780455|r 188 RRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINA--IGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYD 265 (418) Q Consensus 188 RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~--~GTmaHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp 265 (418) |..++-. -.-..+|...||.... ++|+-. .---.| +.+.+++. .++..+.+..+ T Consensus 142 RKt~Pg~----R~l~k~Av~~GGg~~H-------R~~Lsd~ilikdnH--i~~~g~~~-----------~~~~~~~~~~~ 197 (294) T 3c2e_A 142 RKTTPGL----RRLEKYSMLVGGCDTH-------RYDLSSMVMLKDNH--IWATGSIT-----------NAVKNARAVCG 197 (294) T ss_dssp SCCCTTC----HHHHHHHHHHTTCBCC-------CCSTTTSEEECHHH--HHHHSSHH-----------HHHHHHHHHHC T ss_pred CCCCCCC----HHHHHHHHHHCCCCCC-------CCCCHHHHEECCCC--HHHCCCHH-----------HHHHHHHHHCC T ss_conf 7667674----1999999996286463-------35633543222550--22047599-----------99999977414 Q ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCHHHHHHHHHHH Q ss_conf 88-659863468989999989973100243412888878999999999997-7988113089973898999999999972 Q gi|254780455|r 266 DN-LLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKK-MNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418) Q Consensus 266 ~~-~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~-~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418) .. .-..-+||. +.+.. ....+.+.|.+|-.+|... +++.+.++. .+..| ...|.+|+|+|++.+.+. T Consensus 198 ~~~~ieVEv~~~--~ea~~---a~~~g~d~i~LDn~~~~~~-k~~v~~l~~~~~~~~-~v~ieaSGGI~~~ni~~y---- 266 (294) T 3c2e_A 198 FAVKIEVECLSE--DEATE---AIEAGADVIMLDNFKGDGL-KMCAQSLKNKWNGKK-HFLLECSGGLNLDNLEEY---- 266 (294) T ss_dssp TTSCEEEECSSS--HHHHH---HHHHTCSEEECCC-----------------------CCEEEEECCCCC---------- T ss_pred CCEEEEECCCCH--HHHHH---HHHCCCCEEEECCCCHHHH-HHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHH---- T ss_conf 764999625458--88999---9975999663268997999-999999987754488-579999899999999999---- Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 489737863346431465666666556777321689857 Q gi|254780455|r 344 ENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVT 382 (418) Q Consensus 344 ~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlv 382 (418) ....+|.+.+|. + -.+.|++++-+++. T Consensus 267 a~tGvD~Is~g~-l-----------t~~a~~~D~sl~i~ 293 (294) T 3c2e_A 267 LCDDIDIYSTSS-I-----------HQGTPVIDFSLKLA 293 (294) T ss_dssp CCCSCSEEECGG-G-----------TSSCCCCCEEEEEC T ss_pred HHCCCCEEEECH-H-----------HCCCCCCCEEEECC T ss_conf 984989999397-7-----------71998610278636 No 19 >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} Probab=98.10 E-value=0.00059 Score=45.15 Aligned_cols=268 Identities=11% Similarity=-0.010 Sum_probs=152.7 Q ss_pred CCCCHHHHCCHHHH--HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC Q ss_conf 71001244011789--9999999984899659999996588755440000236999999997169998999999837775 Q gi|254780455|r 9 DPIISSLLDTDFYK--ILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFY 86 (418) Q Consensus 9 ~piI~SlLdTD~Yk--ltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~ 86 (418) +..|++.|.-|... +| .++. .-++.++...+..|.+ .+++|++..-..++. +.... T Consensus 15 ~~~i~~~L~ED~~~gDlT-t~~l--~~~~~~~~a~i~are~-------gi~~G~~~~~~i~~~----------~~~~~-- 72 (286) T 1x1o_A 15 EEALRAWLREDLGQGDLT-SLLV--VPEDLEGEAVILAKEG-------GVLAGLWVAERVFAL----------ADPRT-- 72 (286) T ss_dssp HHHHHHHHHHHHTTCCHH-HHHH--SCTTCEEEEEEEESSC-------EECCCHHHHHHHHHH----------HCTTC-- T ss_pred HHHHHHHHHCCCCCCCCC-CCCC--CCCCCEEEEEEEECCC-------EEEECHHHHHHHHHH----------HCCCE-- T ss_conf 999999997089999768-5653--8999759999996879-------899868999999998----------37764-- Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 55557898899997508998416873399269998548778677888999999888887753134866799999999999 Q gi|254780455|r 87 GKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKK 166 (418) Q Consensus 87 ~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (418) +--.+-.+.-.+.+|+++++++||-......|-.+||++..+...+|. ..+ T Consensus 73 --------------~v~~~~~dG~~v~~g~~i~~i~G~a~~il~~ER~~LN~L~~~SGIAT~---------------T~~ 123 (286) T 1x1o_A 73 --------------AFTPLVAEGARVAEGTEVARVRGPLRGILAGERLALNLLQRLSGIATL---------------TRA 123 (286) T ss_dssp --------------EEEESSCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH T ss_pred --------------EEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH T ss_conf --------------898784899886589899999977899999999999999998568899---------------999 Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCH Q ss_conf 99877767426997599842443479788999999998421212012478899997289876752048987640012203 Q gi|254780455|r 167 LWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTD 246 (418) Q Consensus 167 ~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~ 246 (418) ...++ .+....=++||..++-. -.-..+|...||... +++++...--+-+.++-++++.. T Consensus 124 ~v~~~------~~~~~~i~~TRKt~Pg~----r~l~k~Av~~GGg~~-------HR~~Lsd~iLIkdNHi~~~g~~~--- 183 (286) T 1x1o_A 124 YVEAL------AGTKAQILDTRKTTPGL----RALEKYAVRVGGGRN-------HRYGLFDGILLKENHVRAAGGVG--- 183 (286) T ss_dssp HHHHT------TTSSCEEECCSCCCTTC----HHHHHHHHHHHTCBC-------CCSSSSSCEEECHHHHHHHTSHH--- T ss_pred HHHHH------CCCCCEEECCCCCCCCH----HHHHHHHHHHCCCCC-------CCCCCCHHHCCCHHHHHHHCCHH--- T ss_conf 99984------69874352464135449----999999999679734-------35885121012576887616888--- Q ss_pred HHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 678654999999999963988-6598634689899999899731002434128888789999999999977988113089 Q gi|254780455|r 247 IETQNAPYQMMQQWNRLYDDN-LLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFL 325 (418) Q Consensus 247 ~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~i 325 (418) .+.....+..|.. .-..-+||. +.+. .....+.+.|.+|-..|....+ +.+.. + ++ ..| T Consensus 184 --------~a~~~~k~~~~~~~~IeVEv~~~--~e~~---~a~~~gad~I~LDn~~~e~i~~-~v~~~---~--~~-v~i 243 (286) T 1x1o_A 184 --------EAVRRAKARAPHYLKVEVEVRSL--EELE---EALEAGADLILLDNFPLEALRE-AVRRV---G--GR-VPL 243 (286) T ss_dssp --------HHHHHHHHHSCTTSCEEEEESSH--HHHH---HHHHHTCSEEEEESCCHHHHHH-HHHHH---T--TS-SCE T ss_pred --------HHHHHHHHHHCCCCEEEEEECCH--HHHH---HHHHCCCCEEEECCCCHHHHHH-HHHHH---C--CC-EEE T ss_conf --------89999998725775189995879--9999---9986599877328989999999-99987---7--96-699 Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE Q ss_conf 9738989999999999724897378633464314656666665567773216898575 Q gi|254780455|r 326 VFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTK 383 (418) Q Consensus 326 v~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve 383 (418) .+|+|+|++.+.+.-+. | +|.+.+|. | ..+.|++++-.+++. T Consensus 244 eaSGGI~~~ni~~ya~~--G--VD~Is~g~-l-----------t~~a~~~Disl~ivr 285 (286) T 1x1o_A 244 EASGNMTLERAKAAAEA--G--VDYVSVGA-L-----------THSAKALDLSLLVVR 285 (286) T ss_dssp EEESSCCHHHHHHHHHH--T--CSEEECTH-H-----------HHSCCCCCEEEEEEE T ss_pred EEECCCCHHHHHHHHHC--C--CCEEECCH-H-----------HCCCCCCCEEEEEEC T ss_conf 99799999999999976--9--99998397-7-----------659976242898656 No 20 >3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Probab=90.41 E-value=0.0079 Score=37.43 Aligned_cols=79 Identities=10% Similarity=-0.030 Sum_probs=50.9 Q ss_pred HHHHHHHHCCC-CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECC------CCEEEEEECCHHHHHHHHH Q ss_conf 99999997169-9989999998377755555789889999750899841687339------9269998548778677888 Q gi|254780455|r 61 RTQLDHVRSLR-ITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKK------GQYVLNFHGLWKDVTLWEI 133 (418) Q Consensus 61 ~~~i~~l~~~r-ft~eei~yL~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~e------g~~~i~ieGp~~~~~l~Et 133 (418) ++.|+||+++. |.++-++||+..++ +++.+.....-.-+...+..++ ++|+|+|++|+.+++|+|+ T Consensus 68 ~eei~yL~~~~~~~~~fl~~L~~~rf-------~~~~~~~~~~~g~l~i~i~gp~~~~v~~e~plL~I~~~l~~~~~~~~ 140 (407) T 3os4_A 68 SDEFIYLSSLPFFQDDYLHWLRDFRF-------KPEQVSVAVHDGKLDIRIAGLWCEVIMWEVPLLAVISEIVHRRRSTQ 140 (407) T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHCCC-------CGGGEEEEEETTEEEEEEEEEHHHHTTSHHHHHHHHHHHHHHHHCTT T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCC-------CCEEEEEECCCCCEEEEEEEECCCEECCCCHHHHHHCCHHHHHHHHH T ss_conf 99999998579986899999973888-------80167885279946799973011055054058886000776666566 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999998888877 Q gi|254780455|r 134 PSLIIISTLYSRI 146 (418) Q Consensus 134 plL~iine~~~~~ 146 (418) ++++.+++..... T Consensus 141 ~~~~~~~~~~~~~ 153 (407) T 3os4_A 141 VTTDQAVQQLRTK 153 (407) T ss_dssp CCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8999999999999 No 21 >2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} Probab=42.20 E-value=14 Score=15.17 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=26.0 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCEEHHHH----HHHHHHCCCCCC Q ss_conf 987776742699759984244347978899999999842--1212012478----899997289876 Q gi|254780455|r 168 WSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEG--IKDSFLGTSN----ALLAMNYKINAI 228 (418) Q Consensus 168 ~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa--~~~gf~GTSN----v~aa~~~gi~~~ 228 (418) ++.++.+.++...++.=-| ..++-.+++++...- .+.+.. -.| ..+|+.||.|.+ T Consensus 144 ak~Vk~VaeavdvPLIL~s-----D~evlkaale~~~~~rpLL~aAt-~dNy~~m~~lAk~y~~plv 204 (445) T 2h9a_A 144 AKAVATAREVTDLPFILIG-----TPEQLAAALETEGANNPLLYAAT-ADNYEQMVELAKKYNVPLT 204 (445) T ss_dssp HHHHHHHHHHCCSCEEEES-----CHHHHHHHHHHHGGGCCEEEEEC-TTTHHHHHHHHHHHTCCEE T ss_pred HHHHHHHHHCCCCCEEEEC-----CHHHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHHHCCCEEE T ss_conf 9999999824797789968-----89999999998477787553677-8689999999997597399 No 22 >3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} Probab=40.51 E-value=15 Score=15.00 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH Q ss_conf 999999999977988113089973898999999999972 Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF 343 (418) Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~ 343 (418) -+++++++|++.|+++.- .-+..+.++.+.+..+.+.. T Consensus 16 t~rka~~~L~~~~i~~~~-~d~~~~p~~~~eL~~~~~~~ 53 (120) T 3gkx_A 16 TCQKAKKWLIENNIEYTN-RLIVDDNPTVEELKAWIPLS 53 (120) T ss_dssp HHHHHHHHHHHTTCCCEE-EETTTTCCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEE-EEEECCCCCHHHHHHHHHHC T ss_conf 899999999987998399-95405798999999999985 No 23 >3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} Probab=39.14 E-value=15 Score=14.95 Aligned_cols=39 Identities=5% Similarity=-0.114 Sum_probs=27.4 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC Q ss_conf 9999999999779881130899738989999999999724 Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE 344 (418) Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~ 344 (418) -+++++++|++.|+++.- .-+.-+.++.+.+..+.+... T Consensus 15 t~rka~~~L~~~gi~~~~-~d~~~~p~s~~eL~~ll~~~g 53 (120) T 3fz4_A 15 TCRRAKAELDDLAWDYDA-IDIKKNPPAASLIRNWLENSG 53 (120) T ss_dssp HHHHHHHHHHHHTCCEEE-EETTTSCCCHHHHHHHHHHSC T ss_pred HHHHHHHHHHHCCCCCEE-EEECCCCCCHHHHHHHHHHCC T ss_conf 899999999967998589-850036969999999999849 No 24 >1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A Probab=38.48 E-value=16 Score=14.79 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHC Q ss_conf 9999999999779881130899738989999999999724 Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFE 344 (418) Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~ 344 (418) -++++.++|++.|+++.- .-+..+.++++.+..+.+... T Consensus 13 t~rka~~~L~~~~i~~~~-~d~~k~pls~~eL~~l~~~~~ 51 (132) T 1z3e_A 13 SCRKARAWLEEHEIPFVE-RNIFSEPLSIDEIKQILRMTE 51 (132) T ss_dssp HHHHHHHHHHHTTCCEEE-EETTTSCCCHHHHHHHHHTCS T ss_pred HHHHHHHHHHHCCCCEEE-EEHHHCCCCHHHHHHHHHHCC T ss_conf 899999999976998077-203213899999999999829 No 25 >2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} Probab=37.86 E-value=16 Score=14.72 Aligned_cols=32 Identities=13% Similarity=0.436 Sum_probs=19.4 Q ss_pred EEEECCCCCHHHHHHHHHHHCC--CCEEEEEECC Q ss_conf 8997389899999999997248--9737863346 Q gi|254780455|r 324 FLVFSDNLDVDSIIYTYKHFEN--RVQMIFGWGT 355 (418) Q Consensus 324 ~iv~Sd~Ld~e~i~~l~~~~~~--~~~~~fGIGT 355 (418) .+++++++++....++.+.... .+..--|||+ T Consensus 185 ~m~v~~~~~~~~~~d~i~~i~~~~~i~LkvGIG~ 218 (268) T 2qv6_A 185 FMAPSNGMSEEDFLDIFNRINKKYKIELKAGIGI 218 (268) T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHCCCEEEEEEE T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECC T ss_conf 9998899767789999998776508328986556 No 26 >2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella abortus} Probab=29.00 E-value=22 Score=13.77 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 99999999997798811308997389899999999997 Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342 (418) Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418) -++++.++|++.|+++.- .-+..+.++++.+..+.+. T Consensus 17 t~rkal~~L~~~~i~~~~-~d~~~~p~s~~eL~~l~~~ 53 (120) T 2kok_A 17 TMKKARIWLEDHGIDYTF-HDYKKEGLDAETLDRFLKT 53 (120) T ss_dssp HHHHHHHHHHHHTCCEEE-EEHHHHCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEE-EEECCCCCCHHHHHHHHHH T ss_conf 999999999987997699-9713789899999999871 No 27 >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Probab=28.88 E-value=22 Score=13.75 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=29.3 Q ss_pred EEEECCCC--HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC Q ss_conf 98634689--89999989973100243412888878999999999997798811308997389 Q gi|254780455|r 270 IVLPDSFG--TDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDN 330 (418) Q Consensus 270 i~L~DTy~--~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~ 330 (418) |+++|.|| |.+..+.+...+....-+|.|..+.... +.++... |. .||.|+| T Consensus 3 iliiD~~dSFt~Niv~~l~~~g~~v~V~~~~~~~~~~~-----~~~~~~~--~d--giILsgG 56 (192) T 1i1q_B 3 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLI-----DRLATMK--NP--VLMLSPG 56 (192) T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHH-----HHHTTCS--SE--EEEECCC T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCH-----HHHHHCC--CC--EEEEECC T ss_conf 99997888279999999997899079998998773679-----9998349--69--6998199 No 28 >1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structural genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.12 Probab=27.36 E-value=24 Score=13.57 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=26.8 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 99999999997798811308997389899999999997 Q gi|254780455|r 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342 (418) Q Consensus 305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418) -+++++++|++.|+++.- .-+..+.++.+.+..+.+. T Consensus 12 ~~rka~~~L~~~~i~~~~-id~~k~pls~~eL~~~~~~ 48 (114) T 1rw1_A 12 TMKKARTWLDEHKVAYDF-HDYKAVGIDREHLRRWCAE 48 (114) T ss_dssp HHHHHHHHHHHTTCCEEE-EEHHHHCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEE-EECCCCCCCHHHHHHHHHH T ss_conf 899999999986997699-9720359999999999987 No 29 >1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A Probab=26.50 E-value=24 Score=13.47 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=5.4 Q ss_pred CCCCHHHHHHHH Q ss_conf 898999999999 Q gi|254780455|r 329 DNLDVDSIIYTY 340 (418) Q Consensus 329 d~Ld~e~i~~l~ 340 (418) +.++++.++++. T Consensus 74 ~~ls~~e~i~ll 85 (141) T 1s3c_A 74 DKFTDDQLIDFM 85 (141) T ss_dssp SCCCHHHHHHHH T ss_pred CCCCHHHHHHHH T ss_conf 359999999999 No 30 >3f0i_A Arsenate reductase; structural genomics, IDP01300, center for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae} Probab=25.96 E-value=25 Score=13.41 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=18.8 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 9999999997798811308997389899999999997 Q gi|254780455|r 306 GEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342 (418) Q Consensus 306 ~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~ 342 (418) ++|++++|++.|+++.. .=+..+.++.+.+..+.+. T Consensus 17 ~rka~~~L~~~~i~~~~-~d~~~~~~s~~eL~~~l~~ 52 (119) T 3f0i_A 17 SRETLALLENQGIAPQV-IKYLETSPSVEELKRLYQQ 52 (119) T ss_dssp HHHHHHHHHHTTCCCEE-ECHHHHCCCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEE-EEECCCCCCHHHHHHHHHH T ss_conf 99999999987998599-9512469899999999998 No 31 >2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* Probab=24.42 E-value=25 Score=13.42 Aligned_cols=37 Identities=5% Similarity=0.143 Sum_probs=21.9 Q ss_pred HHCCCCCHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHC Q ss_conf 971699989999998377755555--7898899997508 Q gi|254780455|r 67 VRSLRITEKERKWLVENSFYGKKQ--LFEPKFLSWLSDF 103 (418) Q Consensus 67 l~~~rft~eei~yL~~~~~~~~~~--~~~~~fl~~L~~~ 103 (418) .+.++||++|.+.|++..+..... -+-..|.++|.++ T Consensus 29 k~~~~fteeD~~~L~~~~~~l~~~~~~ivd~FY~~l~~~ 67 (195) T 2veb_A 29 KEAVMFTAEDEEYIQKAGEVLEDQVEEILDTWYGFVGSH 67 (195) T ss_dssp HHHHTCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHTC T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 998499999999999979999998999999999998568 No 32 >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Probab=21.18 E-value=31 Score=12.79 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=6.9 Q ss_pred HHHHHHCCCCCCC Q ss_conf 8999972898767 Q gi|254780455|r 217 ALLAMNYKINAIG 229 (418) Q Consensus 217 v~aa~~~gi~~~G 229 (418) ...|.+++++|.- T Consensus 159 ~~lA~~l~v~~~~ 171 (319) T 1lld_A 159 FLIAQQTGVNVKN 171 (319) T ss_dssp HHHHHHHTCCGGG T ss_pred HHHHHHHCCCCCC T ss_conf 9999996969202 Done!