RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (418 letters) >gnl|CDD|29613 cd01401, PncB_like, Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.. Length = 377 Score = 363 bits (933), Expect = e-101 Identities = 139/392 (35%), Positives = 208/392 (53%), Gaps = 21/392 (5%) Query: 14 SLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRIT 73 SLLDTD YK+ M Q + YPD++VT+ NR + L + + LR Q+DH+ +LR + Sbjct: 2 SLLDTDLYKLTMQQAVLHHYPDVQVTYEFTNRSPEDFLEEAAEA--LREQIDHLANLRFS 59 Query: 74 EKERKWLVENSFYGKKQLFEPKFLSWLSDFQL-PEYDLSH---KKGQYVLNFHGLWKDVT 129 E+E +L + +P +L +L F+L PE + KGQ + G WKD Sbjct: 60 EEELAYLRRS-----LPFLKPDYLDYLELFRLNPEEVVVRLDTGKGQLDIRISGPWKDTI 114 Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189 L+E+P L I+S +Y R + L + K + + K ++ +G + DFGTRR Sbjct: 115 LYEVPLLAIVSEVYFRFRDADW-DYEEQLEKLEEKLERLLEEAKRRDLNGFRFSDFGTRR 173 Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249 R S Q+ ++ L++ GTSN AM Y + IGT AHE M A+T + Sbjct: 174 RFSYEVQETVLKGLKQAAPGYLTGTSNVHFAMKYGLTPIGTVAHEWFMAHQALTG---DL 230 Query: 250 QNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQ-WKGFRHDSASPIEGGEK 308 +++ +++W R Y +L I L D+FGTD FL + + + G RHDS P E GEK Sbjct: 231 KDSQKAALERWVREYGGDLGIALTDTFGTDAFLRDFDLYFAKLFDGVRHDSGDPFEWGEK 290 Query: 309 IIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQ 368 IA ++K+ +P+ K LVFSD LDV+ + Y++F+ R+++ FG GTNLTNDF Sbjct: 291 AIAHYEKLGIDPKTKTLVFSDGLDVEKALELYEYFKGRIKVSFGIGTNLTNDFGNKEKST 350 Query: 369 NLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT 400 L IV K+ + N + K+SD P K Sbjct: 351 -----PLNIVIKLVECNGRPVAKISDSPGKNM 377 >gnl|CDD|31677 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]. Length = 405 Score = 263 bits (673), Expect = 7e-71 Identities = 124/417 (29%), Positives = 168/417 (40%), Gaps = 60/417 (14%) Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIK-VTFSLFNRQTQLHLSDKIDESELRTQLDH 66 S+P I SLLDTD YK+ MLQ P+ V F F R+ L + L L+ Sbjct: 7 SEPDIKSLLDTDLYKLTMLQAYLHDGPNNVTVVFEFFFRKLP-FLGGYAVFAGLEEVLEL 65 Query: 67 VRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDL----SHKKGQYVLNFH 122 + +LR +E+E +L F F+P FL++L F L Y + + VL Sbjct: 66 LENLRFSEEEIAYLRSLPF------FKPDFLNYLRRFPLDIYAVPEGTVVFPNEPVLRIE 119 Query: 123 GLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKI 182 G + + L E P L II+ L+ +A + G + Sbjct: 120 GPYLETILLETPLLGIIN--------------EASLIATKAAR--VKDAAG----KGFPV 159 Query: 183 VDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAI 242 +DFGTRRRHS Q W A G F GTSN L A Y I IGT AH L + Sbjct: 160 LDFGTRRRHSADAQPWIGRAAYIGG---FDGTSNVLAAKKYGIKPIGTMAHALIQAFGQL 216 Query: 243 TRTDIETQNAPYQMMQQWNRLY-DDNLLIVLPDSFGTDFFLEHAPSW----MTQWKGFRH 297 + W Y D LLI L D++ D FL + G R Sbjct: 217 F-------GDEVAAFRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRL 269 Query: 298 DSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 DS P E EK+ A K+ +P ++ SD L + II + F R FG GTNL Sbjct: 270 DSGDPRELSEKVRAHLDKLGYDP--VKIIVSDGLLDEKIIALLRAFGARN-DAFGVGTNL 326 Query: 358 TNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTG-DISEIKRYLKIF 413 T L IV K+ + N K K+S +P K + ++ L +F Sbjct: 327 TTAKPRPP---------LDIVYKLVEVNGKPVAKISKNPGKKQVYRSAFVRELLVVF 374 >gnl|CDD|146628 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase (EC:2.4.2.11) is the rate limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also includes Pre-B cell enhancing factor that is a cytokine. This family is related to Quinolinate phosphoribosyltransferase pfam01729. Length = 243 Score = 201 bits (512), Expect = 4e-52 Identities = 86/243 (35%), Positives = 107/243 (44%), Gaps = 20/243 (8%) Query: 181 KIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAA 240 K+ DFGTRRR SL Q+ A +FLGTSN L A Y I A GTSAHE Sbjct: 2 KLHDFGTRRRSSLESQEIVGSA----HLVNFLGTSNVLAAAGYSIPAAGTSAHEWWGAFQ 57 Query: 241 AITRTDIETQNAPYQMM-------QQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWK 293 + + + W Y NL I L D GTD FL P + + Sbjct: 58 ELDAFRNMLEQFQKGKLSVVSDALDLWLAEYG-NLGIALTDLVGTDAFLRDFPLY---FL 113 Query: 294 GFRHDSASPIEGGEKIIAWWKKMNCNPQN----KFLVFSDNLDVDSIIYTYKHF-ENRVQ 348 G R DS P+E GEK+IA + N + K L+FSD LDV+ II +H N Sbjct: 114 GVRPDSGDPVEWGEKLIAHFGSTNIDGYKVLNTKRLIFSDGLDVEKIIEILEHLKGNGFN 173 Query: 349 MIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKR 408 + FG GTNLT D + T + L IV K+ + N KLSD K Sbjct: 174 IAFGIGTNLTQDLNRDTLGFAYKLTPLNIVIKLVEVNGDPVTKLSDSSGKGRCGDPAFVD 233 Query: 409 YLK 411 L+ Sbjct: 234 LLR 236 >gnl|CDD|29614 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.. Length = 343 Score = 193 bits (491), Expect = 9e-50 Identities = 96/358 (26%), Positives = 139/358 (38%), Gaps = 34/358 (9%) Query: 15 LLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITE 74 LLDTD YK+ M+Q YP+ +V F R D I + L L + +LR TE Sbjct: 1 LLDTDLYKLTMMQAYLYPYPNTRVVFEFTFRSNPFGG-DYIVFAGLEEVLKLLENLRFTE 59 Query: 75 KERKWL----VENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTL 130 +E ++L + F+ L + LPE + K + +L G W + L Sbjct: 60 EEIEYLKKLLIFGEFFLYLLFLGKLPLEIYA---LPEGTVVFPK-EPLLTIEGPWPEAGL 115 Query: 131 WEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRR 190 E P L I + S T A L +K G K+ DFGTRRR Sbjct: 116 LETPLLAIWNEATSIAT-------KAARKKLAAGGLLETKD--NLEELGFKLHDFGTRRR 166 Query: 191 HSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQ 250 HS + + + F GTSN A I IGT AH A+ + Sbjct: 167 HSPEAA---LSGGRAALIGGFGGTSNVAAAKKLGIPPIGTMAHSWIQAFGAL-------E 216 Query: 251 NAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPS------WMTQWKGFRHDSASPIE 304 A ++ +W + L I L D++ TD +A G R DS P+E Sbjct: 217 EAAFEAFARWLPQFGGGLGIALIDTYDTDNGFLNALKLAKALGAGGGLLGVRLDSGDPVE 276 Query: 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFD 362 +K+ ++ + K ++ S +LD + I FG GT+LTND Sbjct: 277 LIKKVRKHLDELGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAFGVGTSLTNDLG 334 >gnl|CDD|37722 KOG2511, KOG2511, KOG2511, Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]. Length = 420 Score = 153 bits (387), Expect = 1e-37 Identities = 109/422 (25%), Positives = 177/422 (41%), Gaps = 52/422 (12%) Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67 S+P + S LDTD YKI M +WK PD +V + NR + + + L Q+ + Sbjct: 2 SEPPMVSPLDTDLYKITMAYAVWKAKPDERVVYKYTNRSNPFGGNYEA-FNWLEEQIRFL 60 Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYV------LNF 121 +L++T++E +L + Y ++ +E +L L+ PE +S +G V + Sbjct: 61 ANLKLTDEEIDYLKKELPYLEEAFYE--YLRGLNCSDHPEEAIS--EGSVVFEKKPLIRI 116 Query: 122 HGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLK 181 G WK L+EIP L ++S Y + + Q +K + Sbjct: 117 EGPWKVTILYEIPLLNLVSEAYFKFVDADWHRE------VQGEKAEFL------------ 158 Query: 182 IVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA 241 +FGTRRR + ++A + FLGTSN L A Y I GT AHE M A+ Sbjct: 159 --EFGTRRRRGP---QGAMKASKYCYLGGFLGTSNVLFAKKYGIPVRGTVAHEWVMGFAS 213 Query: 242 ITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMT-----QWKGFR 296 I +I + + N+ L D+F TD FL+ P++ G R Sbjct: 214 I--DEIYDKANRIADGKWTCTFGASNVQTALTDTFSTDVFLKSFPNFCAVALALNDLGVR 271 Query: 297 HDSASPIEGGEKIIAWWKKMNCNPQNKF-LVFSDNLDVDSIIYTYKHFENRVQMI--FGW 353 DS E +K+ + + +P+ +++SD L+V + I T + + FG Sbjct: 272 QDSGDLAEYSKKVRKHYCDVERDPKPSKGIMYSDALNVLNEI-TIDALNKQGGEVDAFGI 330 Query: 354 GTNLTNDFD------GCTPYQNLQTEKL-QIVCKVTKANDKHAVKLSDDPAKTTGDISEI 406 GTNLT DF + + +IV ++ V +SD + D ++ Sbjct: 331 GTNLTTDFQKNSQPIKLSEDVTKVSIPGNKIVIRLFGKEGYPLVDISDLENEPPPDPGQV 390 Query: 407 KR 408 R Sbjct: 391 LR 392 >gnl|CDD|29612 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.. Length = 281 Score = 90.8 bits (225), Expect = 7e-19 Identities = 64/347 (18%), Positives = 102/347 (29%), Gaps = 79/347 (22%) Query: 19 DFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERK 78 D YK+ M+Q PD + T R+ + L L+ + LR Sbjct: 1 DLYKLTMIQA--YPPPDTRATAEFTAREDP-----YGVLAGLEEALELLELLRFPGPLVI 53 Query: 79 WLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLII 138 V PE + + G+ +L G +++ L E L + Sbjct: 54 LAV------------------------PEGTVV-EPGEPLLTIEGPARELLLLERVLLNL 88 Query: 139 ISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKW 198 + L T ++ ++ + K+ DFGTR+ Sbjct: 89 LQRLSGIAT-------------------ATARYVEAAKGANTKVHDFGTRKTTPGL---- 125 Query: 199 CIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQ 258 + + G N L + GT AH + + A + ++ Sbjct: 126 RLLEKYAVLIGGGDGHRNGLSDAILIKDNHGTMAHSIIQ---------AFGELAAVKALR 176 Query: 259 QWNRLYDDNLLIVLPDSFGTDFFLEHAPSW--MTQWKGFRHDSASPIEGGEKII---AWW 313 +W L I L D E A G R DS SP E ++ A Sbjct: 177 RWLP----ELFIALIDVEVDTL--EEALEAAKAGGADGIRLDSGSPEELDPAVLILKARA 230 Query: 314 KKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND 360 + S LD ++I Y V FG GT L + Sbjct: 231 HLDGKGLPRVKIEASGGLDEENIRA-YAETGVDV---FGVGTLLHSA 273 >gnl|CDD|29617 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).. Length = 327 Score = 56.3 bits (136), Expect = 1e-08 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 34/223 (15%) Query: 16 LDTDFYKILMLQLIWKF-YPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITE 74 L TD Y++ M Q WK + F LF R+ + + L L+++ + R TE Sbjct: 2 LLTDLYQLTMAQAYWKEGKHNKPAVFELFFRKLPFGGGYAV-FAGLEELLEYLENFRFTE 60 Query: 75 KERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIP 134 ++ +L +F+ +FL +L F+ + +G+ V + L + Sbjct: 61 EDIDYL------RSLGIFDEEFLDYLRGFRFTGTIYAIPEGEVVFP------NEPLLTVE 108 Query: 135 SLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLT 194 +I + L + +N + L A ++ G +++FG RR Sbjct: 109 GPLIEAQL---LETLLLNLINFQTLIATKAARVRLAA------GGRPLLEFGLRRAQG-- 157 Query: 195 WQKWCIEALQEGIKDSFLG----TSNALLAMNYKINAIGTSAH 233 +A + +++G TSN L Y I GT AH Sbjct: 158 -----PDAALSAARAAYIGGFDGTSNVLAGKLYGIPVSGTMAH 195 >gnl|CDD|146941 pfam04547, Anoctamin, Calcium-activated chloride channel. The family carries eight putative transmembrane domains, and, although it has no similarity to other known channel proteins, it is clearly a calcium-activated ionic channel. It is expressed in various secretory epithelia, the retina and sensory neurons, and mediates receptor-activated chloride currents in diverse physiological processes. Length = 446 Score = 29.9 bits (68), Expect = 1.3 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 17/106 (16%) Query: 21 YKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQL------DHVRSLRITE 74 K+ + Q + + P + F F + ELR QL + + ITE Sbjct: 205 LKVFLFQFVNSYSPLFYIAF--FKGPFGGYCDFGGCLEELRYQLITIMITKQIINN-ITE 261 Query: 75 --------KERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSH 112 K RK ++ +KQ ++ +LP YD+ + Sbjct: 262 VVLPYLKKKIRKKKIKKKKEKEKQEENQLLERVENESELPPYDVFY 307 >gnl|CDD|153387 cd07950, Gallate_Doxase_N, The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB enzymes. Gallate Dioxygenase belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Length = 277 Score = 28.2 bits (63), Expect = 4.2 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 13/72 (18%) Query: 225 INAIGTSAHELPMVAAAITRTDIETQNAP--------YQMMQQWNRLYDDNLLIVLPDSF 276 I IG+S P + A D QN P Y+ ++QW ++L ++ + Sbjct: 5 IGGIGSS--HTPTIGFAY---DKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDH 59 Query: 277 GTDFFLEHAPSW 288 T FF +H ++ Sbjct: 60 VTSFFFDHYSAF 71 >gnl|CDD|30128 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.. Length = 400 Score = 27.7 bits (62), Expect = 5.6 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 237 MVAAAITRTDIETQNAPYQMMQ 258 +VAAAIT DI +N + ++ Sbjct: 230 LVAAAITGGDITVENVIPEHLE 251 >gnl|CDD|39739 KOG4539, KOG4539, KOG4539, Uncharacterized conserved protein [Function unknown]. Length = 274 Score = 27.4 bits (60), Expect = 7.0 Identities = 17/107 (15%), Positives = 28/107 (26%), Gaps = 14/107 (13%) Query: 91 LFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRS 150 +F K W + G WK ++ P L + I+ + Sbjct: 6 VFPIKGKKWCFSRSVDMRAAQSPLGVTPTTVRLHWKPISSESKPITAHADLLVNFISDKM 65 Query: 151 MNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQK 197 K W + K + KIV FG + + Sbjct: 66 --------------NKAWVGLEKSPDSIKNKIVSFGLKLLARTPPSE 98 >gnl|CDD|146402 pfam03744, BioW, 6-carboxyhexanoate--CoA ligase. This family contains the enzyme 6-carboxyhexanoate--CoA ligase EC:6.2.1.14. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA. The enzyme requires magnesium as a cofactor and forms a homodimer. Length = 234 Score = 26.8 bits (60), Expect = 10.0 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 351 FGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHA-VKLSDDPAKTTGDISEIKR- 408 F W D G + + L + KV A A + SDDP TTG ++ K Sbjct: 136 FDW---TDEDSQGWSLLNERVVDALALASKVAAAPGVIAELCWSDDPDYTTGYVATKKLG 192 Query: 409 YLKIFKIK 416 Y +I +K Sbjct: 193 YFRITNLK 200 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.136 0.421 Gapped Lambda K H 0.267 0.0781 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,306,351 Number of extensions: 282841 Number of successful extensions: 663 Number of sequences better than 10.0: 1 Number of HSP's gapped: 626 Number of HSP's successfully gapped: 15 Length of query: 418 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 322 Effective length of database: 4,189,273 Effective search space: 1348945906 Effective search space used: 1348945906 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.4 bits)