RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780455|ref|YP_003064868.1| nicotinate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (418 letters)



>gnl|CDD|29613 cd01401, PncB_like, Nicotinate phosphoribosyltransferase
           (NAPRTase), related to PncB. Nicotinate
           phosphoribosyltransferase catalyses the formation of
           NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
           (PRPP) and nicotinic acid, this is the first, and also
           rate limiting, reaction in the NAD salvage synthesis.
           This salvage pathway serves to recycle NAD degradation
           products. This subgroup is present in bacteria, archea
           and funghi..
          Length = 377

 Score =  363 bits (933), Expect = e-101
 Identities = 139/392 (35%), Positives = 208/392 (53%), Gaps = 21/392 (5%)

Query: 14  SLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRIT 73
           SLLDTD YK+ M Q +   YPD++VT+   NR  +  L +  +   LR Q+DH+ +LR +
Sbjct: 2   SLLDTDLYKLTMQQAVLHHYPDVQVTYEFTNRSPEDFLEEAAEA--LREQIDHLANLRFS 59

Query: 74  EKERKWLVENSFYGKKQLFEPKFLSWLSDFQL-PEYDLSH---KKGQYVLNFHGLWKDVT 129
           E+E  +L  +         +P +L +L  F+L PE  +      KGQ  +   G WKD  
Sbjct: 60  EEELAYLRRS-----LPFLKPDYLDYLELFRLNPEEVVVRLDTGKGQLDIRISGPWKDTI 114

Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189
           L+E+P L I+S +Y R        +   L   + K +   +  K ++ +G +  DFGTRR
Sbjct: 115 LYEVPLLAIVSEVYFRFRDADW-DYEEQLEKLEEKLERLLEEAKRRDLNGFRFSDFGTRR 173

Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249
           R S   Q+  ++ L++       GTSN   AM Y +  IGT AHE  M   A+T    + 
Sbjct: 174 RFSYEVQETVLKGLKQAAPGYLTGTSNVHFAMKYGLTPIGTVAHEWFMAHQALTG---DL 230

Query: 250 QNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQ-WKGFRHDSASPIEGGEK 308
           +++    +++W R Y  +L I L D+FGTD FL     +  + + G RHDS  P E GEK
Sbjct: 231 KDSQKAALERWVREYGGDLGIALTDTFGTDAFLRDFDLYFAKLFDGVRHDSGDPFEWGEK 290

Query: 309 IIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQ 368
            IA ++K+  +P+ K LVFSD LDV+  +  Y++F+ R+++ FG GTNLTNDF       
Sbjct: 291 AIAHYEKLGIDPKTKTLVFSDGLDVEKALELYEYFKGRIKVSFGIGTNLTNDFGNKEKST 350

Query: 369 NLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT 400
                 L IV K+ + N +   K+SD P K  
Sbjct: 351 -----PLNIVIKLVECNGRPVAKISDSPGKNM 377


>gnl|CDD|31677 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme
           metabolism].
          Length = 405

 Score =  263 bits (673), Expect = 7e-71
 Identities = 124/417 (29%), Positives = 168/417 (40%), Gaps = 60/417 (14%)

Query: 8   SDPIISSLLDTDFYKILMLQLIWKFYPDIK-VTFSLFNRQTQLHLSDKIDESELRTQLDH 66
           S+P I SLLDTD YK+ MLQ      P+   V F  F R+    L      + L   L+ 
Sbjct: 7   SEPDIKSLLDTDLYKLTMLQAYLHDGPNNVTVVFEFFFRKLP-FLGGYAVFAGLEEVLEL 65

Query: 67  VRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDL----SHKKGQYVLNFH 122
           + +LR +E+E  +L    F      F+P FL++L  F L  Y +         + VL   
Sbjct: 66  LENLRFSEEEIAYLRSLPF------FKPDFLNYLRRFPLDIYAVPEGTVVFPNEPVLRIE 119

Query: 123 GLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKI 182
           G + +  L E P L II+                 L+  +A +             G  +
Sbjct: 120 GPYLETILLETPLLGIIN--------------EASLIATKAAR--VKDAAG----KGFPV 159

Query: 183 VDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAI 242
           +DFGTRRRHS   Q W   A   G    F GTSN L A  Y I  IGT AH L      +
Sbjct: 160 LDFGTRRRHSADAQPWIGRAAYIGG---FDGTSNVLAAKKYGIKPIGTMAHALIQAFGQL 216

Query: 243 TRTDIETQNAPYQMMQQWNRLY-DDNLLIVLPDSFGTDFFLEHAPSW----MTQWKGFRH 297
                          + W   Y  D LLI L D++  D FL            +  G R 
Sbjct: 217 F-------GDEVAAFRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRL 269

Query: 298 DSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357
           DS  P E  EK+ A   K+  +P    ++ SD L  + II   + F  R    FG GTNL
Sbjct: 270 DSGDPRELSEKVRAHLDKLGYDP--VKIIVSDGLLDEKIIALLRAFGARN-DAFGVGTNL 326

Query: 358 TNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTG-DISEIKRYLKIF 413
           T                L IV K+ + N K   K+S +P K      + ++  L +F
Sbjct: 327 TTAKPRPP---------LDIVYKLVEVNGKPVAKISKNPGKKQVYRSAFVRELLVVF 374


>gnl|CDD|146628 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase
           (NAPRTase) family.  Nicotinate phosphoribosyltransferase
           (EC:2.4.2.11) is the rate limiting enzyme that catalyses
           the first reaction in the NAD salvage synthesis. This
           family also includes Pre-B cell enhancing factor that is
           a cytokine. This family is related to Quinolinate
           phosphoribosyltransferase pfam01729.
          Length = 243

 Score =  201 bits (512), Expect = 4e-52
 Identities = 86/243 (35%), Positives = 107/243 (44%), Gaps = 20/243 (8%)

Query: 181 KIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAA 240
           K+ DFGTRRR SL  Q+    A       +FLGTSN L A  Y I A GTSAHE      
Sbjct: 2   KLHDFGTRRRSSLESQEIVGSA----HLVNFLGTSNVLAAAGYSIPAAGTSAHEWWGAFQ 57

Query: 241 AITRTDIETQNAPYQMM-------QQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWK 293
            +       +      +         W   Y  NL I L D  GTD FL   P +   + 
Sbjct: 58  ELDAFRNMLEQFQKGKLSVVSDALDLWLAEYG-NLGIALTDLVGTDAFLRDFPLY---FL 113

Query: 294 GFRHDSASPIEGGEKIIAWWKKMNCNPQN----KFLVFSDNLDVDSIIYTYKHF-ENRVQ 348
           G R DS  P+E GEK+IA +   N +       K L+FSD LDV+ II   +H   N   
Sbjct: 114 GVRPDSGDPVEWGEKLIAHFGSTNIDGYKVLNTKRLIFSDGLDVEKIIEILEHLKGNGFN 173

Query: 349 MIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKR 408
           + FG GTNLT D +  T     +   L IV K+ + N     KLSD   K          
Sbjct: 174 IAFGIGTNLTQDLNRDTLGFAYKLTPLNIVIKLVEVNGDPVTKLSDSSGKGRCGDPAFVD 233

Query: 409 YLK 411
            L+
Sbjct: 234 LLR 236


>gnl|CDD|29614 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase
           (NAPRTase) family. Nicotinate phosphoribosyltransferase
           catalyses the formation of NAMN and PPi from
           5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic
           acid, this is the first, and also rate limiting,
           reaction in the NAD salvage synthesis. This salvage
           pathway serves to recycle NAD degradation products..
          Length = 343

 Score =  193 bits (491), Expect = 9e-50
 Identities = 96/358 (26%), Positives = 139/358 (38%), Gaps = 34/358 (9%)

Query: 15  LLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITE 74
           LLDTD YK+ M+Q     YP+ +V F    R       D I  + L   L  + +LR TE
Sbjct: 1   LLDTDLYKLTMMQAYLYPYPNTRVVFEFTFRSNPFGG-DYIVFAGLEEVLKLLENLRFTE 59

Query: 75  KERKWL----VENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTL 130
           +E ++L    +   F+          L   +   LPE  +   K + +L   G W +  L
Sbjct: 60  EEIEYLKKLLIFGEFFLYLLFLGKLPLEIYA---LPEGTVVFPK-EPLLTIEGPWPEAGL 115

Query: 131 WEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRR 190
            E P L I +   S  T               A   L +K        G K+ DFGTRRR
Sbjct: 116 LETPLLAIWNEATSIAT-------KAARKKLAAGGLLETKD--NLEELGFKLHDFGTRRR 166

Query: 191 HSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQ 250
           HS       +   +  +   F GTSN   A    I  IGT AH       A+       +
Sbjct: 167 HSPEAA---LSGGRAALIGGFGGTSNVAAAKKLGIPPIGTMAHSWIQAFGAL-------E 216

Query: 251 NAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPS------WMTQWKGFRHDSASPIE 304
            A ++   +W   +   L I L D++ TD    +A              G R DS  P+E
Sbjct: 217 EAAFEAFARWLPQFGGGLGIALIDTYDTDNGFLNALKLAKALGAGGGLLGVRLDSGDPVE 276

Query: 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFD 362
             +K+     ++  +   K ++ S +LD +  I             FG GT+LTND  
Sbjct: 277 LIKKVRKHLDELGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAFGVGTSLTNDLG 334


>gnl|CDD|37722 KOG2511, KOG2511, KOG2511, Nicotinic acid phosphoribosyltransferase
           [Coenzyme transport and metabolism].
          Length = 420

 Score =  153 bits (387), Expect = 1e-37
 Identities = 109/422 (25%), Positives = 177/422 (41%), Gaps = 52/422 (12%)

Query: 8   SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67
           S+P + S LDTD YKI M   +WK  PD +V +   NR      + +   + L  Q+  +
Sbjct: 2   SEPPMVSPLDTDLYKITMAYAVWKAKPDERVVYKYTNRSNPFGGNYEA-FNWLEEQIRFL 60

Query: 68  RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYV------LNF 121
            +L++T++E  +L +   Y ++  +E  +L  L+    PE  +S  +G  V      +  
Sbjct: 61  ANLKLTDEEIDYLKKELPYLEEAFYE--YLRGLNCSDHPEEAIS--EGSVVFEKKPLIRI 116

Query: 122 HGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLK 181
            G WK   L+EIP L ++S  Y +      +         Q +K  +             
Sbjct: 117 EGPWKVTILYEIPLLNLVSEAYFKFVDADWHRE------VQGEKAEFL------------ 158

Query: 182 IVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA 241
             +FGTRRR      +  ++A +      FLGTSN L A  Y I   GT AHE  M  A+
Sbjct: 159 --EFGTRRRRGP---QGAMKASKYCYLGGFLGTSNVLFAKKYGIPVRGTVAHEWVMGFAS 213

Query: 242 ITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMT-----QWKGFR 296
           I   +I  +       +        N+   L D+F TD FL+  P++          G R
Sbjct: 214 I--DEIYDKANRIADGKWTCTFGASNVQTALTDTFSTDVFLKSFPNFCAVALALNDLGVR 271

Query: 297 HDSASPIEGGEKIIAWWKKMNCNPQNKF-LVFSDNLDVDSIIYTYKHFENRVQMI--FGW 353
            DS    E  +K+   +  +  +P+    +++SD L+V + I T      +   +  FG 
Sbjct: 272 QDSGDLAEYSKKVRKHYCDVERDPKPSKGIMYSDALNVLNEI-TIDALNKQGGEVDAFGI 330

Query: 354 GTNLTNDFD------GCTPYQNLQTEKL-QIVCKVTKANDKHAVKLSDDPAKTTGDISEI 406
           GTNLT DF         +      +    +IV ++        V +SD   +   D  ++
Sbjct: 331 GTNLTTDFQKNSQPIKLSEDVTKVSIPGNKIVIRLFGKEGYPLVDISDLENEPPPDPGQV 390

Query: 407 KR 408
            R
Sbjct: 391 LR 392


>gnl|CDD|29612 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
           This family contains two enzymes that play an important
           role in NAD production by either allowing quinolinic
           acid (QA) , quinolinate phosphoribosyl transferase
           (QAPRTase), or nicotinic acid (NA), nicotinate
           phosphoribosyltransferase (NAPRTase), to be used in the
           synthesis of NAD. QAPRTase catalyses the reaction of
           quinolinic acid (QA) with
           5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
           of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
           pyrophosphate and carbon dioxide, an important step in
           the de novo synthesis of NAD. NAPRTase catalyses a
           similar reaction leading to NAMN and pyrophosphate,
           using nicotinic acid an PPRP as substrates, used in the
           NAD salvage pathway..
          Length = 281

 Score = 90.8 bits (225), Expect = 7e-19
 Identities = 64/347 (18%), Positives = 102/347 (29%), Gaps = 79/347 (22%)

Query: 19  DFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERK 78
           D YK+ M+Q      PD + T     R+           + L   L+ +  LR       
Sbjct: 1   DLYKLTMIQA--YPPPDTRATAEFTAREDP-----YGVLAGLEEALELLELLRFPGPLVI 53

Query: 79  WLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLII 138
             V                        PE  +  + G+ +L   G  +++ L E   L +
Sbjct: 54  LAV------------------------PEGTVV-EPGEPLLTIEGPARELLLLERVLLNL 88

Query: 139 ISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKW 198
           +  L    T                     ++ ++    +  K+ DFGTR+         
Sbjct: 89  LQRLSGIAT-------------------ATARYVEAAKGANTKVHDFGTRKTTPGL---- 125

Query: 199 CIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQ 258
            +      +     G  N L       +  GT AH +              + A  + ++
Sbjct: 126 RLLEKYAVLIGGGDGHRNGLSDAILIKDNHGTMAHSIIQ---------AFGELAAVKALR 176

Query: 259 QWNRLYDDNLLIVLPDSFGTDFFLEHAPSW--MTQWKGFRHDSASPIEGGEKII---AWW 313
           +W       L I L D        E A          G R DS SP E    ++   A  
Sbjct: 177 RWLP----ELFIALIDVEVDTL--EEALEAAKAGGADGIRLDSGSPEELDPAVLILKARA 230

Query: 314 KKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND 360
                      +  S  LD ++I   Y      V   FG GT L + 
Sbjct: 231 HLDGKGLPRVKIEASGGLDEENIRA-YAETGVDV---FGVGTLLHSA 273


>gnl|CDD|29617 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase
           (NAPRTase), subgroup A. Nicotinate
           phosphoribosyltransferase catalyses the formation of
           NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
           (PRPP) and nicotinic acid, this is the first, and also
           rate limiting, reaction in the NAD salvage synthesis.
           This salvage pathway serves to recycle NAD degradation
           products. This subgroup is present in bacteria and
           eukaryota (except funghi)..
          Length = 327

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 34/223 (15%)

Query: 16  LDTDFYKILMLQLIWKF-YPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITE 74
           L TD Y++ M Q  WK    +    F LF R+        +  + L   L+++ + R TE
Sbjct: 2   LLTDLYQLTMAQAYWKEGKHNKPAVFELFFRKLPFGGGYAV-FAGLEELLEYLENFRFTE 60

Query: 75  KERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIP 134
           ++  +L          +F+ +FL +L  F+      +  +G+ V        +  L  + 
Sbjct: 61  EDIDYL------RSLGIFDEEFLDYLRGFRFTGTIYAIPEGEVVFP------NEPLLTVE 108

Query: 135 SLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLT 194
             +I + L   +    +N  +   L A    ++           G  +++FG RR     
Sbjct: 109 GPLIEAQL---LETLLLNLINFQTLIATKAARVRLAA------GGRPLLEFGLRRAQG-- 157

Query: 195 WQKWCIEALQEGIKDSFLG----TSNALLAMNYKINAIGTSAH 233
                 +A     + +++G    TSN L    Y I   GT AH
Sbjct: 158 -----PDAALSAARAAYIGGFDGTSNVLAGKLYGIPVSGTMAH 195


>gnl|CDD|146941 pfam04547, Anoctamin, Calcium-activated chloride channel.  The
           family carries eight putative transmembrane domains,
           and, although it has no similarity to other known
           channel proteins, it is clearly a calcium-activated
           ionic channel. It is expressed in various secretory
           epithelia, the retina and sensory neurons, and mediates
           receptor-activated chloride currents in diverse
           physiological processes.
          Length = 446

 Score = 29.9 bits (68), Expect = 1.3
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 17/106 (16%)

Query: 21  YKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQL------DHVRSLRITE 74
            K+ + Q +  + P   + F  F      +        ELR QL        + +  ITE
Sbjct: 205 LKVFLFQFVNSYSPLFYIAF--FKGPFGGYCDFGGCLEELRYQLITIMITKQIINN-ITE 261

Query: 75  --------KERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSH 112
                   K RK  ++     +KQ          ++ +LP YD+ +
Sbjct: 262 VVLPYLKKKIRKKKIKKKKEKEKQEENQLLERVENESELPPYDVFY 307


>gnl|CDD|153387 cd07950, Gallate_Doxase_N, The N-terminal domain of the Class III
           extradiol dioxygenase, Gallate Dioxygenase, which
           catalyzes the oxidization and subsequent ring-opening of
           gallate.  Gallate Dioxygenase catalyzes the oxidization
           and subsequent ring-opening of gallate, an intermediate
           in the degradation of the aromatic compound, syringate.
           The reaction product of gallate dioxygenase is
           4-oxalomesaconate. The amino acid sequence of the
           N-terminal and C-terminal regions of gallate dioxygenase
           exhibits homology with the sequence of PCA
           4,5-dioxygenase B (catalytic) and A subunits,
           respectively. The enzyme is estimated to be a homodimer
           according to the Escherichia coli enzyme. LigAB-like
           enzymes are usually composed of two subunits, designated
           A and B, which form a tetramer composed of two copies of
           each subunit. In this subfamily, the subunits A and B
           are fused to make a single polypeptide chain. The dimer
           interface for this subfamily may resemble the tetramer
           interface of classical LigAB enzymes. Gallate
           Dioxygenase belongs to the class III extradiol
           dioxygenase family, a group of enzymes which use a
           non-heme Fe(II) to cleave aromatic rings between a
           hydroxylated carbon and an adjacent non-hydroxylated
           carbon.
          Length = 277

 Score = 28.2 bits (63), Expect = 4.2
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 13/72 (18%)

Query: 225 INAIGTSAHELPMVAAAITRTDIETQNAP--------YQMMQQWNRLYDDNLLIVLPDSF 276
           I  IG+S    P +  A    D   QN P        Y+ ++QW      ++L ++ +  
Sbjct: 5   IGGIGSS--HTPTIGFAY---DKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDH 59

Query: 277 GTDFFLEHAPSW 288
            T FF +H  ++
Sbjct: 60  VTSFFFDHYSAF 71


>gnl|CDD|30128 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
           catalyzes enolpyruvyl transfer as part of the first step
           in the biosynthesis of peptidoglycan, a component of the
           bacterial cell wall. The reaction is phosphoenolpyruvate
           + UDP-N-acetyl-D-glucosamine = phosphate +
           UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
           enzyme is of interest as a potential target for
           anti-bacterial agents. The only other known enolpyruvyl
           transferase is the related
           5-enolpyruvylshikimate-3-phosphate synthase..
          Length = 400

 Score = 27.7 bits (62), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 237 MVAAAITRTDIETQNAPYQMMQ 258
           +VAAAIT  DI  +N   + ++
Sbjct: 230 LVAAAITGGDITVENVIPEHLE 251


>gnl|CDD|39739 KOG4539, KOG4539, KOG4539, Uncharacterized conserved protein
           [Function unknown].
          Length = 274

 Score = 27.4 bits (60), Expect = 7.0
 Identities = 17/107 (15%), Positives = 28/107 (26%), Gaps = 14/107 (13%)

Query: 91  LFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRS 150
           +F  K   W     +         G         WK ++    P       L + I+ + 
Sbjct: 6   VFPIKGKKWCFSRSVDMRAAQSPLGVTPTTVRLHWKPISSESKPITAHADLLVNFISDKM 65

Query: 151 MNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQK 197
                          K W  + K  +    KIV FG +        +
Sbjct: 66  --------------NKAWVGLEKSPDSIKNKIVSFGLKLLARTPPSE 98


>gnl|CDD|146402 pfam03744, BioW, 6-carboxyhexanoate--CoA ligase.  This family
           contains the enzyme 6-carboxyhexanoate--CoA ligase
           EC:6.2.1.14. This enzyme is involved in the first step
           of biotin synthesis, where it converts pimelate into
           pimeloyl-CoA. The enzyme requires magnesium as a
           cofactor and forms a homodimer.
          Length = 234

 Score = 26.8 bits (60), Expect = 10.0
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 351 FGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHA-VKLSDDPAKTTGDISEIKR- 408
           F W      D  G +       + L +  KV  A    A +  SDDP  TTG ++  K  
Sbjct: 136 FDW---TDEDSQGWSLLNERVVDALALASKVAAAPGVIAELCWSDDPDYTTGYVATKKLG 192

Query: 409 YLKIFKIK 416
           Y +I  +K
Sbjct: 193 YFRITNLK 200


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0781    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,306,351
Number of extensions: 282841
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 15
Length of query: 418
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 322
Effective length of database: 4,189,273
Effective search space: 1348945906
Effective search space used: 1348945906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)