RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780455|ref|YP_003064868.1| nicotinate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (418 letters)



>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
           genomics, protein structure initiative, NYSGXRC, PSI;
           2.50A {Agrobacterium tumefaciens} (A:1-50,A:167-381)
          Length = 265

 Score =  210 bits (536), Expect = 2e-55
 Identities = 133/222 (59%), Positives = 169/222 (76%), Gaps = 3/222 (1%)

Query: 147 TVRSMNPF---SVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEAL 203
            +  + P    ++D+LYA+AK K+W K+ +L+   GL+I DFGTRRRHS  WQ+WC+EAL
Sbjct: 44  MIWKLYPLGYFTLDVLYARAKAKMWEKVERLRELPGLRISDFGTRRRHSFLWQRWCVEAL 103

Query: 204 QEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRL 263
           +EGI  +F GTSN LLAM+  + A+GT+AHELPMV AA+ +T+ E   APYQ+++ WNRL
Sbjct: 104 KEGIGPAFTGTSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEELAAAPYQVLKDWNRL 163

Query: 264 YDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNK 323
           Y  NLLIVLPD+FGT  FL +AP W+  W GFR DSA PIEGGEKII WW+KM  +P+ K
Sbjct: 164 YGGNLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEWWRKMGRDPRTK 223

Query: 324 FLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCT 365
            L+FSD LDVD+I+ TY+HFE RV+M FGWGTNLTNDF GC 
Sbjct: 224 MLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCA 265



 Score = 56.1 bits (135), Expect = 9e-09
 Identities = 20/26 (76%), Positives = 24/26 (92%)

Query: 9  DPIISSLLDTDFYKILMLQLIWKFYP 34
          DPI+ SL+DTDFYK+LMLQ+IWK YP
Sbjct: 25 DPIVRSLIDTDFYKLLMLQMIWKLYP 50


>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2;
           structural genomics, protein structure initiative,
           hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas
           aeruginosa} (A:1-35,A:145-352)
          Length = 243

 Score =  182 bits (463), Expect = 7e-47
 Identities = 69/211 (32%), Positives = 98/211 (46%), Gaps = 10/211 (4%)

Query: 158 LLYAQAKKKLWSKIIKLK------NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSF 211
               QA+++L  K   L+        +G K+ DFGTRRR S    +  +  L+E     F
Sbjct: 36  ATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCF 95

Query: 212 LGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIV 271
           +GTSN  LA    +  +GT AHE  M    +        ++    +  W R Y   L I 
Sbjct: 96  VGTSNVHLARKLDLKPLGTMAHEWLMAHQQLGP---RLIDSQSAALDCWVREYRGLLGIA 152

Query: 272 LPDSFGTDFFLEHAPSWM-TQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDN 330
           L D   TD FL     +    + G RHDS  P+   EK IA + K+  +P  K LVFSD 
Sbjct: 153 LTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDG 212

Query: 331 LDVDSIIYTYKHFENRVQMIFGWGTNLTNDF 361
           LD+   +  Y+  + R+ + FG GT+ T D 
Sbjct: 213 LDLPRALKIYRALQGRINVSFGIGTHFTCDL 243



 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 8  SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFS 41
          S+ I+ +LLDTDFYK+ M+Q +   YP       
Sbjct: 9  SERIVQNLLDTDFYKLTMMQAVLHNYPATVEQAR 42


>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
           visfatin, beryllium fluoride, nicotinamide
           D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
           sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
           2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
           2g95_A 2g96_A* 2g97_A* 3g8e_A* (A:147-389)
          Length = 243

 Score =  149 bits (377), Expect = 7e-37
 Identities = 36/261 (13%), Positives = 72/261 (27%), Gaps = 45/261 (17%)

Query: 125 WKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVD 184
           W +  L +    I ++T                    +   K   +     +    K+ D
Sbjct: 1   WIETILVQSWYPITVATNSRE--------------QKKILAKYLLETSGNLDGLEYKLHD 46

Query: 185 FGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITR 244
           FG R   S         A        F GT   +  +       GT          A   
Sbjct: 47  FGYRGVSSQETAGIGASAHLVN----FKGTDT-VAGLALIKKYYGTKDPVPGYSVPAAEH 101

Query: 245 TDIET--QNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEH-APSWMTQW--------- 292
           + I    ++      +     +    + V+ DS+      E      +            
Sbjct: 102 STITAWGKDHEKDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDLRHLIVSRSTQAP 161

Query: 293 KGFRHDSASPIEGGEKIIAWW----------KKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342
              R DS +P++   K++             K     P    ++  D +D++++    + 
Sbjct: 162 LIIRPDSGNPLDTVLKVLEILGKKFPVTENSKGYKLLPPYLRVIQGDGVDINTLQEIVEG 221

Query: 343 FENRV----QMIFGWGTNLTN 359
            + ++     + FG G  L  
Sbjct: 222 MKQKMWSIENIAFGSGGGLLQ 242


>2im5_A Nicotinate phosphoribosyltransferase; structural genomics,
           NYSGXRC, PSI, protein structure initiative; 2.20A
           {Porphyromonas gingivalis} (A:243-338)
          Length = 96

 Score =  140 bits (356), Expect = 2e-34
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 267 NLLIVLPDSFGTDFFLEHAPSWMTQ-WKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFL 325
           +L  VL D++ TD F+ +        +   RHDS  P    EK +  ++++  +P+ K++
Sbjct: 1   DLGTVLTDTYTTDVFMRNFSKKHAMLFTSLRHDSGDPEIFIEKAVRRYEELRVDPKIKYI 60

Query: 326 VFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND 360
           +FSD+L     I   K    R++  FG GTNLTND
Sbjct: 61  IFSDSLTPQRAIEIQKLCAGRIKASFGIGTNLTND 95


>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
           genomics, protein structure initiative, NYSGXRC, PSI;
           2.50A {Agrobacterium tumefaciens} (A:51-166,A:382-412)
          Length = 147

 Score =  115 bits (289), Expect = 1e-26
 Identities = 70/128 (54%), Positives = 92/128 (71%), Gaps = 6/128 (4%)

Query: 35  DIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP 94
           ++  TFSL NR   + L+++IDE ELR QLDH R+LR+++KE  WL  N+FYG+ Q+FEP
Sbjct: 1   EVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEP 60

Query: 95  KFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRS---- 150
           +FLSWLS +QLPEY+L  + GQY LNFHG W D TLWEIP+L II+ L SR  +RS    
Sbjct: 61  EFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSPKTI 120

Query: 151 --MNPFSV 156
             + P S+
Sbjct: 121 ASLKPISI 128



 Score = 36.6 bits (85), Expect = 0.006
 Identities = 14/22 (63%), Positives = 18/22 (81%)

Query: 375 LQIVCKVTKANDKHAVKLSDDP 396
           + IVCKV+ AN + AVKLSD+P
Sbjct: 126 ISIVCKVSDANGRPAVKLSDNP 147


>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger
           motif, structural genomics, PSI, protein structure
           initiative; 2.40A {Thermoplasma acidophilum} PDB:
           1ytd_A* 1yte_A* 1ytk_A (A:109-303)
          Length = 195

 Score =  112 bits (280), Expect = 1e-25
 Identities = 33/234 (14%), Positives = 63/234 (26%), Gaps = 44/234 (18%)

Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189
           ++E   L  I                     +    K+                 FG RR
Sbjct: 2   MYETAILGFICQASGI---------------STKASKVRLAA------GDSPFFSFGIRR 40

Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249
            H          A   G      G S  L A     + +GT  H L ++           
Sbjct: 41  MHPAISPMIDRSAYIGGAD----GVSGILGAKLIDQDPVGTMPHALSIMLGDE------- 89

Query: 250 QNAPYQMMQQWNRLYDDNLLIVLPDSFGTD-FFLEHAPSWMTQWKGFRHDSASPIEGGEK 308
                          +    ++L D++  + F          +    R D+ S   G  +
Sbjct: 90  ----EAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFE 145

Query: 309 IIAWWKKM---NCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTN 359
            +    +         +  ++ S  LD +++    +         FG GT++++
Sbjct: 146 ALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAE----AFGVGTSISS 195


>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C,
           structural genomics, JCSG, protein structure initiative,
           PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae}
           (A:27-162,A:377-407)
          Length = 167

 Score =  107 bits (269), Expect = 2e-24
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 29/179 (16%)

Query: 21  YKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL 80
           YKI     ++  +PD+ VT+   NR +QL  + +     L+ Q  ++ +LR TE+E ++L
Sbjct: 1   YKITXHAAVFTNFPDVTVTYKYTNRSSQLTFNKEAIN-WLKEQFSYLGNLRFTEEEIEYL 59

Query: 81  VENSFYGKKQLFEPKFLSWLSDFQL------------PEYDLSHKKGQYVLNFHGLWKDV 128
                  +       ++ ++S                 E +      +  +   G WKD 
Sbjct: 60  -----KQEIPYLPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTHYKLKILVSGSWKDT 114

Query: 129 TLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSG---LKIVD 184
            L+EIP L +IS  Y +       P        Q K +  + +IKL   +G   +KI D
Sbjct: 115 ILYEIPLLSLISEAYFKFVDIDSEP--------QVKSEPLNIVIKLLEVNGNHAIKISD 165



 Score = 30.5 bits (69), Expect = 0.37
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 371 QTEKLQIVCKVTKANDKHAVKLSDD 395
           ++E L IV K+ + N  HA+K+SD+
Sbjct: 142 KSEPLNIVIKLLEVNGNHAIKISDN 166


>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
           genomics, PSI, protein structure initiative; 2.00A
           {Enterococcus faecalis V583} (A:126-323)
          Length = 198

 Score =  107 bits (267), Expect = 4e-24
 Identities = 42/237 (17%), Positives = 71/237 (29%), Gaps = 44/237 (18%)

Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189
           L E   L +++      T                K      +I         +++FGTRR
Sbjct: 1   LVETALLNMVNFQTLIAT----------------KAARIKSVIG-----DDPLLEFGTRR 39

Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249
              L    W   A   G       TSN      + I   GT AH L              
Sbjct: 40  AQELDAAIWGTRAAYIG---GADATSNVRAGKIFGIPVSGTHAHSLVQSYG--------- 87

Query: 250 QNAPYQMMQQWNRLY-DDNLLIVLPDSF--GTDFFLEHAPSWM--TQWKGFRHDSASPIE 304
               Y+    + + + D   L+   D+   G    +  A        + G R DS     
Sbjct: 88  --NDYEAFMAYAKTHRDCVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAY 145

Query: 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDF 361
             +++     +         +  S++LD ++I+            ++G GT L   +
Sbjct: 146 ISKRVREQLDEAGFTE--AKIYASNDLDENTILNLKMQ--KSKIDVWGVGTKLITAY 198


>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C,
           structural genomics, JCSG, protein structure initiative,
           PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae}
           (A:275-376)
          Length = 102

 Score = 99.0 bits (247), Expect = 1e-21
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 267 NLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKIIAWWKKM-NCNPQNKF 324
           N  + L D+FGTD FL+   P +   + G R DS  P+E  +KI   +  +      +K 
Sbjct: 2   NAGLALTDTFGTDDFLKSFRPPYSDAYVGVRQDSGDPVEYTKKISHHYHDVLKLPKFSKI 61

Query: 325 LVFSDNLDVDSIIYTYKHF-ENRVQMIFGWGTNLTNDF 361
           + +SD+L+V+  I       EN     FG GTN TNDF
Sbjct: 62  ICYSDSLNVEKAITYSHAAKENGXLATFGIGTNFTNDF 99


>2im5_A Nicotinate phosphoribosyltransferase; structural genomics,
           NYSGXRC, PSI, protein structure initiative; 2.20A
           {Porphyromonas gingivalis} (A:26-138,A:339-372)
          Length = 147

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 16/152 (10%)

Query: 34  PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFE 93
           P     F   +R  Q    +  +   +R ++  + +L +T  E+++L       +     
Sbjct: 1   PRAYGEFRFIDRNRQGFTEEFAEL--VRGEIRAMAALSLTRDEKEFL-----QRELPYLP 53

Query: 94  PKFLSWLSDFQLPEYDL---SHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRIT--- 147
           P ++ +L  F+    ++      +G   +   GL   VTLWE P L +IS LY R     
Sbjct: 54  PIYIDFLDGFRFDPEEVTVSIDAQGHLDIRAQGLLYRVTLWETPILAVISELYYRFIGAE 113

Query: 148 VRSMNPFSVDLLYAQAK---KKLWSKIIKLKN 176
              + P ++ +   + K   K  W   +KL +
Sbjct: 114 GGGVEPLNIVMKLWKCKMTAKDDWHYCVKLSD 145


>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
           visfatin, beryllium fluoride, nicotinamide
           D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
           sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
           2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
           2g95_A 2g96_A* 2g97_A* 3g8e_A* (A:1-146,A:390-484)
          Length = 241

 Score = 94.6 bits (235), Expect = 2e-20
 Identities = 16/145 (11%), Positives = 48/145 (33%), Gaps = 11/145 (7%)

Query: 7   TSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDK------IDESEL 60
            ++   + LL TD YK+   +        +   F    ++T+     K      +     
Sbjct: 4   AAEAEFNILLATDSYKVTHYKQYPPNTSKVYSYFECREKKTENSKLRKVKYEETVFYGLQ 63

Query: 61  RTQLDHVRSLRITEKERKWLVE-NSFYGKKQLFEPKFLSWLSDFQLPEYDLS-HKKGQYV 118
                +++   +T+++ +   +    + +  +F  K  +++ +       +      +  
Sbjct: 64  YILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGWNYILEKYDGHLPIEIKAVPEGF 123

Query: 119 LNFHG---LWKDVTLWEIPSLIIIS 140
           +   G      + T  E   L  ++
Sbjct: 124 VIPRGNVLFTVENTDPECYWLTNLT 148


>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
           phosphoribosylpyrophosphate, Zn metal ION, structural
           genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
           (A:105-300)
          Length = 196

 Score = 94.4 bits (234), Expect = 3e-20
 Identities = 37/236 (15%), Positives = 64/236 (27%), Gaps = 47/236 (19%)

Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189
           ++E   L ++S      T              + K                 +  FG R 
Sbjct: 2   IYETALLGMLSQASGIAT-----------AALRIKIAA----------KFKPVYSFGIRH 40

Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249
            H          A   G      G S  L A      A+GT  H L +            
Sbjct: 41  MHPAIAPMIDRAAFIGG----CDGVSGVLGAEMMGEKAVGTMPHALIITVGDQ------- 89

Query: 250 QNAPYQMMQQWNRLY-DDNLLIVLPDSFGTDFFLEH--APSWMTQWKGFRHDSASPIEGG 306
                +  + ++ +  ++   I L D+F  +       A +   +    R D+ S   G 
Sbjct: 90  ----VKAWKYFDEVIEEEVPRIALVDTFYDEKVEAVMAAEALGKKLFAVRLDTPSSRRGN 145

Query: 307 EKIIAWWKKM---NCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTN 359
            + I    +            +  S  LD + I       +      FG G  + +
Sbjct: 146 FRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVD-----AFGVGGAIAS 196


>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
           genomics, PSI, protein structure initiative; 2.00A
           {Enterococcus faecalis V583} (A:1-125,A:324-354)
          Length = 156

 Score = 93.3 bits (232), Expect = 5e-20
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 16/136 (11%)

Query: 8   SDPIISSLLDTDFYKILMLQLIWKFY-PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDH 66
           +    S  L TD Y+I M+Q  W+    D+   F  + R+   +    I    L   +++
Sbjct: 4   TYADDSLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFA-GLERLVNY 62

Query: 67  VRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKG------QYVLN 120
           + +L  TE +  +L E         +   FL++L++F+      S  +G      + ++ 
Sbjct: 63  LENLTFTESDIAYLREVEE------YPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQ 116

Query: 121 FHGLWKDVTLWEIPSL 136
             G        + P+L
Sbjct: 117 IEGPLAQC--QDQPAL 130


>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2;
           structural genomics, protein structure initiative,
           hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas
           aeruginosa} (A:36-144,A:353-408)
          Length = 165

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 35  DIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP 94
           + +V +    R  +  L   +    +R QL+++  L I++++  +L    F        P
Sbjct: 1   NAEVEWEFRCRNQED-LRLYLPA--IREQLEYLAGLAISDEQLAFLERIPF------LAP 51

Query: 95  KFLSWLSDFQLP--EYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSM- 151
            F+ +L  F+          +  ++ L   G W  V L+E+P L +IS + +R    +  
Sbjct: 52  DFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAPG 111

Query: 152 -NPFSV 156
             P ++
Sbjct: 112 VEPMNI 117



 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 369 NLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLK-IFKI 415
               E + IV K++  N     K+SD P K      +   YLK +F++
Sbjct: 109 APGVEPMNIVVKMSACNGHPVAKISDTPGKAQCRDPDFIHYLKHVFQV 156


>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C,
           structural genomics, JCSG, protein structure initiative,
           PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae}
           (A:1-26,A:163-240)
          Length = 104

 Score = 84.6 bits (209), Expect = 2e-17
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 160 YAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDS-------FL 212
           Y    ++   K   L + +G++  +FGTRRR SL  Q    + + + +  +        L
Sbjct: 29  YENQLEQAEKKAETLFD-NGIRFSEFGTRRRRSLKAQDLIXQGIXKAVNGNPDRNKSLLL 87

Query: 213 GTSNALLAMNYKINAIG 229
           GTSN L A  Y +  IG
Sbjct: 88  GTSNILFAKKYGVKPIG 104


>2im5_A Nicotinate phosphoribosyltransferase; structural genomics,
           NYSGXRC, PSI, protein structure initiative; 2.20A
           {Porphyromonas gingivalis} (A:1-25,A:139-209)
          Length = 96

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 160 YAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALL 219
           + Q ++   SK   ++         FG RRR SL  +    + L++   +S  GTSN  L
Sbjct: 28  WKQVEEVTRSKGELMRE-HRATFSIFGMRRRFSLEVEDRVTDILKQYAGESLFGTSNVHL 86

Query: 220 AMNYKINAIG 229
           A  + +   G
Sbjct: 87  AHKHGLRVSG 96


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 30.1 bits (68), Expect = 0.52
 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 5/27 (18%)

Query: 1  MKEYFSTSDPIISSLLDTDFYKILMLQ 27
          + +  S     I SL++  FY+ + +Q
Sbjct: 2  LADVMS-----IESLVEVVFYRGMTMQ 23


>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan
           sulfate biosynthesis, substrate specificity,
           glycoprotein, golgi apparatus, membrane; HET: A3P; 2.30A
           {Homo sapiens} (A:1-118,A:180-212)
          Length = 151

 Score = 29.2 bits (65), Expect = 1.0
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 4   YFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQ 63
            FS    I        F    + + I+K    IK+   +     Q H+   +D   L T 
Sbjct: 78  PFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPIEQFHV---VDGDRLIT- 133

Query: 64  LDHVRSLRITEK 75
            + +  L++ EK
Sbjct: 134 -EPLPELQLVEK 144


>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645,
           structural genomics, JCSG, PSI, protein structure
           initiative; 2.50A {Thermotoga maritima}
           (A:1-159,A:273-285)
          Length = 172

 Score = 28.4 bits (63), Expect = 1.9
 Identities = 9/133 (6%), Positives = 30/133 (22%), Gaps = 25/133 (18%)

Query: 13  SSLLDTDFYKILMLQLIWK--FYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSL 70
           S  +    + +  +  +       D      L +                  +     + 
Sbjct: 3   SDKIHHHHHHMEKILDLLMSFVKEDE-GKLDLASF---------------PLRNTTAGAH 46

Query: 71  RITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSH-KKGQYVLNFHGLWKDVT 129
            + + E             ++            +    D  + +    +    G    + 
Sbjct: 47  LLLKTENVVASG------IEVSRMFLEKMGLLSKFNVEDGEYLEGTGVIGEIEGNTYKLL 100

Query: 130 LWEIPSLIIISTL 142
           + E   L ++S +
Sbjct: 101 VAERTLLNVLSVM 113


>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane
           protein, multiprotein-pigment complex, photosynthesis;
           HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus
           elongatus} (A:190-317)
          Length = 128

 Score = 28.2 bits (63), Expect = 2.1
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 9/35 (25%)

Query: 261 NRLYD---DNLLIVLPDSFGTDFFLEHAPSWMTQW 292
           N+L D       I LP  F  +      PS M + 
Sbjct: 35  NKLLDAGVAAKDIPLPHEFILN------PSLMAEL 63


>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase;
           peptidoglycan, structural genomics, NPPSFA; HET: EPU;
           1.81A {Aquifex aeolicus VF5} (A:19-29,A:238-294)
          Length = 68

 Score = 27.8 bits (62), Expect = 2.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 237 MVAAAITRTDIETQNAPYQMMQ 258
           MV A +T  +I  +NA    ++
Sbjct: 20  MVGAVLTDGEILLENARINHLR 41


>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot,
           structural genomics, NPPSFA; HET: SAM MTA; 2.48A
           {Pyrococcus horikoshii} (A:)
          Length = 201

 Score = 27.4 bits (61), Expect = 3.4
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 274 DSFGTDFFLEHAPSWMTQWKGFR 296
             +G  FF+E   +W    K F 
Sbjct: 52  KRWGGPFFIEFNRNWRKVMKEFT 74


>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2,
           protein structure initiative, joint center for
           structural genomics; HET: UNL; 1.05A {Anabaena
           variabilis atcc 29413} PDB: 2evr_A 2fg0_A (A:1-85)
          Length = 85

 Score = 26.7 bits (59), Expect = 5.9
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 46  QTQLHLSDKIDESELRTQLDHVRSLRITEKER--KWLVENSFYGKKQLFEPKFLSWLS 101
              L+L D  + + L TQ    R L++T  ++     V         L E  +  WLS
Sbjct: 21  LAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAVEV--------CLCEDDYPGWLS 70


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,254,713
Number of extensions: 146879
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 34
Length of query: 418
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 327
Effective length of database: 1,879,794
Effective search space: 614692638
Effective search space used: 614692638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)