RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (418 letters) >1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} (A:1-50,A:167-381) Length = 265 Score = 210 bits (536), Expect = 2e-55 Identities = 133/222 (59%), Positives = 169/222 (76%), Gaps = 3/222 (1%) Query: 147 TVRSMNPF---SVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEAL 203 + + P ++D+LYA+AK K+W K+ +L+ GL+I DFGTRRRHS WQ+WC+EAL Sbjct: 44 MIWKLYPLGYFTLDVLYARAKAKMWEKVERLRELPGLRISDFGTRRRHSFLWQRWCVEAL 103 Query: 204 QEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRL 263 +EGI +F GTSN LLAM+ + A+GT+AHELPMV AA+ +T+ E APYQ+++ WNRL Sbjct: 104 KEGIGPAFTGTSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEELAAAPYQVLKDWNRL 163 Query: 264 YDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNK 323 Y NLLIVLPD+FGT FL +AP W+ W GFR DSA PIEGGEKII WW+KM +P+ K Sbjct: 164 YGGNLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEWWRKMGRDPRTK 223 Query: 324 FLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCT 365 L+FSD LDVD+I+ TY+HFE RV+M FGWGTNLTNDF GC Sbjct: 224 MLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCA 265 Score = 56.1 bits (135), Expect = 9e-09 Identities = 20/26 (76%), Positives = 24/26 (92%) Query: 9 DPIISSLLDTDFYKILMLQLIWKFYP 34 DPI+ SL+DTDFYK+LMLQ+IWK YP Sbjct: 25 DPIVRSLIDTDFYKLLMLQMIWKLYP 50 >1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} (A:1-35,A:145-352) Length = 243 Score = 182 bits (463), Expect = 7e-47 Identities = 69/211 (32%), Positives = 98/211 (46%), Gaps = 10/211 (4%) Query: 158 LLYAQAKKKLWSKIIKLK------NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSF 211 QA+++L K L+ +G K+ DFGTRRR S + + L+E F Sbjct: 36 ATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCF 95 Query: 212 LGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIV 271 +GTSN LA + +GT AHE M + ++ + W R Y L I Sbjct: 96 VGTSNVHLARKLDLKPLGTMAHEWLMAHQQLGP---RLIDSQSAALDCWVREYRGLLGIA 152 Query: 272 LPDSFGTDFFLEHAPSWM-TQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDN 330 L D TD FL + + G RHDS P+ EK IA + K+ +P K LVFSD Sbjct: 153 LTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDG 212 Query: 331 LDVDSIIYTYKHFENRVQMIFGWGTNLTNDF 361 LD+ + Y+ + R+ + FG GT+ T D Sbjct: 213 LDLPRALKIYRALQGRINVSFGIGTHFTCDL 243 Score = 54.6 bits (131), Expect = 2e-08 Identities = 14/34 (41%), Positives = 20/34 (58%) Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFS 41 S+ I+ +LLDTDFYK+ M+Q + YP Sbjct: 9 SERIVQNLLDTDFYKLTMMQAVLHNYPATVEQAR 42 >3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* (A:147-389) Length = 243 Score = 149 bits (377), Expect = 7e-37 Identities = 36/261 (13%), Positives = 72/261 (27%), Gaps = 45/261 (17%) Query: 125 WKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVD 184 W + L + I ++T + K + + K+ D Sbjct: 1 WIETILVQSWYPITVATNSRE--------------QKKILAKYLLETSGNLDGLEYKLHD 46 Query: 185 FGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITR 244 FG R S A F GT + + GT A Sbjct: 47 FGYRGVSSQETAGIGASAHLVN----FKGTDT-VAGLALIKKYYGTKDPVPGYSVPAAEH 101 Query: 245 TDIET--QNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEH-APSWMTQW--------- 292 + I ++ + + + V+ DS+ E + Sbjct: 102 STITAWGKDHEKDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDLRHLIVSRSTQAP 161 Query: 293 KGFRHDSASPIEGGEKIIAWW----------KKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342 R DS +P++ K++ K P ++ D +D++++ + Sbjct: 162 LIIRPDSGNPLDTVLKVLEILGKKFPVTENSKGYKLLPPYLRVIQGDGVDINTLQEIVEG 221 Query: 343 FENRV----QMIFGWGTNLTN 359 + ++ + FG G L Sbjct: 222 MKQKMWSIENIAFGSGGGLLQ 242 >2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} (A:243-338) Length = 96 Score = 140 bits (356), Expect = 2e-34 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 267 NLLIVLPDSFGTDFFLEHAPSWMTQ-WKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFL 325 +L VL D++ TD F+ + + RHDS P EK + ++++ +P+ K++ Sbjct: 1 DLGTVLTDTYTTDVFMRNFSKKHAMLFTSLRHDSGDPEIFIEKAVRRYEELRVDPKIKYI 60 Query: 326 VFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND 360 +FSD+L I K R++ FG GTNLTND Sbjct: 61 IFSDSLTPQRAIEIQKLCAGRIKASFGIGTNLTND 95 >1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} (A:51-166,A:382-412) Length = 147 Score = 115 bits (289), Expect = 1e-26 Identities = 70/128 (54%), Positives = 92/128 (71%), Gaps = 6/128 (4%) Query: 35 DIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP 94 ++ TFSL NR + L+++IDE ELR QLDH R+LR+++KE WL N+FYG+ Q+FEP Sbjct: 1 EVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEP 60 Query: 95 KFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRS---- 150 +FLSWLS +QLPEY+L + GQY LNFHG W D TLWEIP+L II+ L SR +RS Sbjct: 61 EFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSPKTI 120 Query: 151 --MNPFSV 156 + P S+ Sbjct: 121 ASLKPISI 128 Score = 36.6 bits (85), Expect = 0.006 Identities = 14/22 (63%), Positives = 18/22 (81%) Query: 375 LQIVCKVTKANDKHAVKLSDDP 396 + IVCKV+ AN + AVKLSD+P Sbjct: 126 ISIVCKVSDANGRPAVKLSDNP 147 >2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger motif, structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A (A:109-303) Length = 195 Score = 112 bits (280), Expect = 1e-25 Identities = 33/234 (14%), Positives = 63/234 (26%), Gaps = 44/234 (18%) Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189 ++E L I + K+ FG RR Sbjct: 2 MYETAILGFICQASGI---------------STKASKVRLAA------GDSPFFSFGIRR 40 Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249 H A G G S L A + +GT H L ++ Sbjct: 41 MHPAISPMIDRSAYIGGAD----GVSGILGAKLIDQDPVGTMPHALSIMLGDE------- 89 Query: 250 QNAPYQMMQQWNRLYDDNLLIVLPDSFGTD-FFLEHAPSWMTQWKGFRHDSASPIEGGEK 308 + ++L D++ + F + R D+ S G + Sbjct: 90 ----EAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFE 145 Query: 309 IIAWWKKM---NCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTN 359 + + + ++ S LD +++ + FG GT++++ Sbjct: 146 ALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAE----AFGVGTSISS 195 >1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} (A:27-162,A:377-407) Length = 167 Score = 107 bits (269), Expect = 2e-24 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 29/179 (16%) Query: 21 YKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL 80 YKI ++ +PD+ VT+ NR +QL + + L+ Q ++ +LR TE+E ++L Sbjct: 1 YKITXHAAVFTNFPDVTVTYKYTNRSSQLTFNKEAIN-WLKEQFSYLGNLRFTEEEIEYL 59 Query: 81 VENSFYGKKQLFEPKFLSWLSDFQL------------PEYDLSHKKGQYVLNFHGLWKDV 128 + ++ ++S E + + + G WKD Sbjct: 60 -----KQEIPYLPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTHYKLKILVSGSWKDT 114 Query: 129 TLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSG---LKIVD 184 L+EIP L +IS Y + P Q K + + +IKL +G +KI D Sbjct: 115 ILYEIPLLSLISEAYFKFVDIDSEP--------QVKSEPLNIVIKLLEVNGNHAIKISD 165 Score = 30.5 bits (69), Expect = 0.37 Identities = 11/25 (44%), Positives = 18/25 (72%) Query: 371 QTEKLQIVCKVTKANDKHAVKLSDD 395 ++E L IV K+ + N HA+K+SD+ Sbjct: 142 KSEPLNIVIKLLEVNGNHAIKISDN 166 >2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI, protein structure initiative; 2.00A {Enterococcus faecalis V583} (A:126-323) Length = 198 Score = 107 bits (267), Expect = 4e-24 Identities = 42/237 (17%), Positives = 71/237 (29%), Gaps = 44/237 (18%) Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189 L E L +++ T K +I +++FGTRR Sbjct: 1 LVETALLNMVNFQTLIAT----------------KAARIKSVIG-----DDPLLEFGTRR 39 Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249 L W A G TSN + I GT AH L Sbjct: 40 AQELDAAIWGTRAAYIG---GADATSNVRAGKIFGIPVSGTHAHSLVQSYG--------- 87 Query: 250 QNAPYQMMQQWNRLY-DDNLLIVLPDSF--GTDFFLEHAPSWM--TQWKGFRHDSASPIE 304 Y+ + + + D L+ D+ G + A + G R DS Sbjct: 88 --NDYEAFMAYAKTHRDCVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAY 145 Query: 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDF 361 +++ + + S++LD ++I+ ++G GT L + Sbjct: 146 ISKRVREQLDEAGFTE--AKIYASNDLDENTILNLKMQ--KSKIDVWGVGTKLITAY 198 >1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} (A:275-376) Length = 102 Score = 99.0 bits (247), Expect = 1e-21 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 267 NLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKIIAWWKKM-NCNPQNKF 324 N + L D+FGTD FL+ P + + G R DS P+E +KI + + +K Sbjct: 2 NAGLALTDTFGTDDFLKSFRPPYSDAYVGVRQDSGDPVEYTKKISHHYHDVLKLPKFSKI 61 Query: 325 LVFSDNLDVDSIIYTYKHF-ENRVQMIFGWGTNLTNDF 361 + +SD+L+V+ I EN FG GTN TNDF Sbjct: 62 ICYSDSLNVEKAITYSHAAKENGXLATFGIGTNFTNDF 99 >2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} (A:26-138,A:339-372) Length = 147 Score = 94.8 bits (236), Expect = 2e-20 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 16/152 (10%) Query: 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFE 93 P F +R Q + + +R ++ + +L +T E+++L + Sbjct: 1 PRAYGEFRFIDRNRQGFTEEFAEL--VRGEIRAMAALSLTRDEKEFL-----QRELPYLP 53 Query: 94 PKFLSWLSDFQLPEYDL---SHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRIT--- 147 P ++ +L F+ ++ +G + GL VTLWE P L +IS LY R Sbjct: 54 PIYIDFLDGFRFDPEEVTVSIDAQGHLDIRAQGLLYRVTLWETPILAVISELYYRFIGAE 113 Query: 148 VRSMNPFSVDLLYAQAK---KKLWSKIIKLKN 176 + P ++ + + K K W +KL + Sbjct: 114 GGGVEPLNIVMKLWKCKMTAKDDWHYCVKLSD 145 >3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* (A:1-146,A:390-484) Length = 241 Score = 94.6 bits (235), Expect = 2e-20 Identities = 16/145 (11%), Positives = 48/145 (33%), Gaps = 11/145 (7%) Query: 7 TSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDK------IDESEL 60 ++ + LL TD YK+ + + F ++T+ K + Sbjct: 4 AAEAEFNILLATDSYKVTHYKQYPPNTSKVYSYFECREKKTENSKLRKVKYEETVFYGLQ 63 Query: 61 RTQLDHVRSLRITEKERKWLVE-NSFYGKKQLFEPKFLSWLSDFQLPEYDLS-HKKGQYV 118 +++ +T+++ + + + + +F K +++ + + + Sbjct: 64 YILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGWNYILEKYDGHLPIEIKAVPEGF 123 Query: 119 LNFHG---LWKDVTLWEIPSLIIIS 140 + G + T E L ++ Sbjct: 124 VIPRGNVLFTVENTDPECYWLTNLT 148 >2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} (A:105-300) Length = 196 Score = 94.4 bits (234), Expect = 3e-20 Identities = 37/236 (15%), Positives = 64/236 (27%), Gaps = 47/236 (19%) Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189 ++E L ++S T + K + FG R Sbjct: 2 IYETALLGMLSQASGIAT-----------AALRIKIAA----------KFKPVYSFGIRH 40 Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249 H A G G S L A A+GT H L + Sbjct: 41 MHPAIAPMIDRAAFIGG----CDGVSGVLGAEMMGEKAVGTMPHALIITVGDQ------- 89 Query: 250 QNAPYQMMQQWNRLY-DDNLLIVLPDSFGTDFFLEH--APSWMTQWKGFRHDSASPIEGG 306 + + ++ + ++ I L D+F + A + + R D+ S G Sbjct: 90 ----VKAWKYFDEVIEEEVPRIALVDTFYDEKVEAVMAAEALGKKLFAVRLDTPSSRRGN 145 Query: 307 EKIIAWWKKM---NCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTN 359 + I + + S LD + I + FG G + + Sbjct: 146 FRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVD-----AFGVGGAIAS 196 >2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI, protein structure initiative; 2.00A {Enterococcus faecalis V583} (A:1-125,A:324-354) Length = 156 Score = 93.3 bits (232), Expect = 5e-20 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 16/136 (11%) Query: 8 SDPIISSLLDTDFYKILMLQLIWKFY-PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDH 66 + S L TD Y+I M+Q W+ D+ F + R+ + I L +++ Sbjct: 4 TYADDSLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFA-GLERLVNY 62 Query: 67 VRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKG------QYVLN 120 + +L TE + +L E + FL++L++F+ S +G + ++ Sbjct: 63 LENLTFTESDIAYLREVEE------YPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQ 116 Query: 121 FHGLWKDVTLWEIPSL 136 G + P+L Sbjct: 117 IEGPLAQC--QDQPAL 130 >1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} (A:36-144,A:353-408) Length = 165 Score = 88.2 bits (219), Expect = 2e-18 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 13/126 (10%) Query: 35 DIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP 94 + +V + R + L + +R QL+++ L I++++ +L F P Sbjct: 1 NAEVEWEFRCRNQED-LRLYLPA--IREQLEYLAGLAISDEQLAFLERIPF------LAP 51 Query: 95 KFLSWLSDFQLP--EYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSM- 151 F+ +L F+ + ++ L G W V L+E+P L +IS + +R + Sbjct: 52 DFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAPG 111 Query: 152 -NPFSV 156 P ++ Sbjct: 112 VEPMNI 117 Score = 57.4 bits (139), Expect = 4e-09 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 369 NLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLK-IFKI 415 E + IV K++ N K+SD P K + YLK +F++ Sbjct: 109 APGVEPMNIVVKMSACNGHPVAKISDTPGKAQCRDPDFIHYLKHVFQV 156 >1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} (A:1-26,A:163-240) Length = 104 Score = 84.6 bits (209), Expect = 2e-17 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 160 YAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDS-------FL 212 Y ++ K L + +G++ +FGTRRR SL Q + + + + + L Sbjct: 29 YENQLEQAEKKAETLFD-NGIRFSEFGTRRRRSLKAQDLIXQGIXKAVNGNPDRNKSLLL 87 Query: 213 GTSNALLAMNYKINAIG 229 GTSN L A Y + IG Sbjct: 88 GTSNILFAKKYGVKPIG 104 >2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} (A:1-25,A:139-209) Length = 96 Score = 79.0 bits (195), Expect = 1e-15 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 160 YAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALL 219 + Q ++ SK ++ FG RRR SL + + L++ +S GTSN L Sbjct: 28 WKQVEEVTRSKGELMRE-HRATFSIFGMRRRFSLEVEDRVTDILKQYAGESLFGTSNVHL 86 Query: 220 AMNYKINAIG 229 A + + G Sbjct: 87 AHKHGLRVSG 96 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 30.1 bits (68), Expect = 0.52 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 5/27 (18%) Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQ 27 + + S I SL++ FY+ + +Q Sbjct: 2 LADVMS-----IESLVEVVFYRGMTMQ 23 >3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate biosynthesis, substrate specificity, glycoprotein, golgi apparatus, membrane; HET: A3P; 2.30A {Homo sapiens} (A:1-118,A:180-212) Length = 151 Score = 29.2 bits (65), Expect = 1.0 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Query: 4 YFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQ 63 FS I F + + I+K IK+ + Q H+ +D L T Sbjct: 78 PFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPIEQFHV---VDGDRLIT- 133 Query: 64 LDHVRSLRITEK 75 + + L++ EK Sbjct: 134 -EPLPELQLVEK 144 >1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} (A:1-159,A:273-285) Length = 172 Score = 28.4 bits (63), Expect = 1.9 Identities = 9/133 (6%), Positives = 30/133 (22%), Gaps = 25/133 (18%) Query: 13 SSLLDTDFYKILMLQLIWK--FYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSL 70 S + + + + + D L + + + Sbjct: 3 SDKIHHHHHHMEKILDLLMSFVKEDE-GKLDLASF---------------PLRNTTAGAH 46 Query: 71 RITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSH-KKGQYVLNFHGLWKDVT 129 + + E ++ + D + + + G + Sbjct: 47 LLLKTENVVASG------IEVSRMFLEKMGLLSKFNVEDGEYLEGTGVIGEIEGNTYKLL 100 Query: 130 LWEIPSLIIISTL 142 + E L ++S + Sbjct: 101 VAERTLLNVLSVM 113 >1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (A:190-317) Length = 128 Score = 28.2 bits (63), Expect = 2.1 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 9/35 (25%) Query: 261 NRLYD---DNLLIVLPDSFGTDFFLEHAPSWMTQW 292 N+L D I LP F + PS M + Sbjct: 35 NKLLDAGVAAKDIPLPHEFILN------PSLMAEL 63 >2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5} (A:19-29,A:238-294) Length = 68 Score = 27.8 bits (62), Expect = 2.8 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 237 MVAAAITRTDIETQNAPYQMMQ 258 MV A +T +I +NA ++ Sbjct: 20 MVGAVLTDGEILLENARINHLR 41 >2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii} (A:) Length = 201 Score = 27.4 bits (61), Expect = 3.4 Identities = 7/23 (30%), Positives = 10/23 (43%) Query: 274 DSFGTDFFLEHAPSWMTQWKGFR 296 +G FF+E +W K F Sbjct: 52 KRWGGPFFIEFNRNWRKVMKEFT 74 >2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: UNL; 1.05A {Anabaena variabilis atcc 29413} PDB: 2evr_A 2fg0_A (A:1-85) Length = 85 Score = 26.7 bits (59), Expect = 5.9 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 10/58 (17%) Query: 46 QTQLHLSDKIDESELRTQLDHVRSLRITEKER--KWLVENSFYGKKQLFEPKFLSWLS 101 L+L D + + L TQ R L++T ++ V L E + WLS Sbjct: 21 LAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAVEV--------CLCEDDYPGWLS 70 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.136 0.421 Gapped Lambda K H 0.267 0.0519 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,254,713 Number of extensions: 146879 Number of successful extensions: 409 Number of sequences better than 10.0: 1 Number of HSP's gapped: 372 Number of HSP's successfully gapped: 34 Length of query: 418 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 327 Effective length of database: 1,879,794 Effective search space: 614692638 Effective search space used: 614692638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.8 bits)