RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (418 letters) >d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Length = 266 Score = 300 bits (769), Expect = 2e-82 Identities = 158/260 (60%), Positives = 200/260 (76%) Query: 154 FSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLG 213 F++D+LYA+AK K+W K+ +L+ GL+I DFGTRRRHS WQ+WC+EAL+EGI +F G Sbjct: 3 FTLDVLYARAKAKMWEKVERLRELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGPAFTG 62 Query: 214 TSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLP 273 TSN LLAM+ + A+GT+AHELPMV AA+ +T+ E APYQ+++ WNRLY NLLIVLP Sbjct: 63 TSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEELAAAPYQVLKDWNRLYGGNLLIVLP 122 Query: 274 DSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDV 333 D+FGT FL +AP W+ W GFR DSA PIEGGEKII WW+KM +P+ K L+FSD LDV Sbjct: 123 DAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEWWRKMGRDPRTKMLIFSDGLDV 182 Query: 334 DSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLS 393 D+I+ TY+HFE RV+M FGWGTNLTNDF GC P + + IVCKV+ AN + AVKLS Sbjct: 183 DAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAPKTIASLKPISIVCKVSDANGRPAVKLS 242 Query: 394 DDPAKTTGDISEIKRYLKIF 413 D+P K TGD +E++RYLK F Sbjct: 243 DNPQKATGDPAEVERYLKFF 262 >d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 255 Score = 241 bits (617), Expect = 7e-65 Identities = 84/263 (31%), Positives = 121/263 (46%), Gaps = 19/263 (7%) Query: 161 AQAKKKLWSKIIKLK------NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGT 214 QA+++L K L+ +G K+ DFGTRRR S + + L+E F+GT Sbjct: 4 EQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGT 63 Query: 215 SNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPD 274 SN LA + +GT AHE M + ++ + W R Y L I L D Sbjct: 64 SNVHLARKLDLKPLGTMAHEWLMAHQQLGP---RLIDSQSAALDCWVREYRGLLGIALTD 120 Query: 275 SFGTDFFLEHAPSWM-TQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDV 333 TD FL + + G RHDS P+ EK IA + K+ +P K LVFSD LD+ Sbjct: 121 CITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDGLDL 180 Query: 334 DSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLS 393 + Y+ + R+ + FG GT+ T D G P + IV K++ N K+S Sbjct: 181 PRALKIYRALQGRINVSFGIGTHFTCDLPGVEP--------MNIVVKMSACNGHPVAKIS 232 Query: 394 DDPAKTTGDISEIKRYLK-IFKI 415 D P K + YLK +F++ Sbjct: 233 DTPGKAQCRDPDFIHYLKHVFQV 255 >d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 Score = 225 bits (575), Expect = 4e-60 Identities = 85/265 (32%), Positives = 132/265 (49%), Gaps = 16/265 (6%) Query: 160 YAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDS-------FL 212 Y ++ K L + +G++ +FGTRRR SL Q ++ + + + + L Sbjct: 4 YENQLEQAEKKAETLFD-NGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNPDRNKSLLL 62 Query: 213 GTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYD-DNLLIV 271 GTSN L A Y + IGT AHE M A+I+ + +A M W + N + Sbjct: 63 GTSNILFAKKYGVKPIGTVAHEWVMGVASISE---DYLHANKNAMDCWINTFGAKNAGLA 119 Query: 272 LPDSFGTDFFL-EHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSD 329 L D+FGTD FL P + + G R DS P+E +KI + + P+ +K + +SD Sbjct: 120 LTDTFGTDDFLKSFRPPYSDAYVGVRQDSGDPVEYTKKISHHYHDVLKLPKFSKIICYSD 179 Query: 330 NLDVDSIIYTYKHF-ENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKH 388 +L+V+ I EN + FG GTN TNDF + +++E L IV K+ + N H Sbjct: 180 SLNVEKAITYSHAAKENGMLATFGIGTNFTNDFRKKS-EPQVKSEPLNIVIKLLEVNGNH 238 Query: 389 AVKLSDDPAKTTGDISEIKRYLKIF 413 A+K+SD+ K GD + +KR + Sbjct: 239 AIKISDNLGKNMGDPATVKRVKEEL 263 >d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Length = 160 Score = 166 bits (422), Expect = 3e-42 Identities = 88/143 (61%), Positives = 113/143 (79%) Query: 9 DPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVR 68 DPI+ SL+DTDFYK+LMLQ+IWK YP++ TFSL NR + L+++IDE ELR QLDH R Sbjct: 18 DPIVRSLIDTDFYKLLMLQMIWKLYPEVDATFSLINRTKTVRLAEEIDEMELREQLDHAR 77 Query: 69 SLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDV 128 +LR+++KE WL N+FYG+ Q+FEP+FLSWLS +QLPEY+L + GQY LNFHG W D Sbjct: 78 TLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDT 137 Query: 129 TLWEIPSLIIISTLYSRITVRSM 151 TLWEIP+L II+ L SR +RS+ Sbjct: 138 TLWEIPALSIINELRSRSAMRSL 160 >d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 149 Score = 136 bits (343), Expect = 4e-33 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 18/152 (11%) Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67 S+P+I SLLDTD YKI M ++ +PD+ VT+ NR +QL + + L+ Q ++ Sbjct: 2 SEPVIKSLLDTDMYKITMHAAVFTNFPDVTVTYKYTNRSSQLTFNKEAIN-WLKEQFSYL 60 Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDF----------QLPEYDLSHKKGQY 117 +LR TE+E ++L + Y ++ ++S ++ K Y Sbjct: 61 GNLRFTEEEIEYLKQEIPY-----LPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTHY 115 Query: 118 VLNF--HGLWKDVTLWEIPSLIIISTLYSRIT 147 L G WKD L+EIP L +IS Y + Sbjct: 116 KLKILVSGSWKDTILYEIPLLSLISEAYFKFV 147 >d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 141 Score = 131 bits (331), Expect = 1e-31 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 11/140 (7%) Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67 S+ I+ +LLDTDFYK+ M+Q + YP+ +V + R + ++ +R QL+++ Sbjct: 6 SERIVQNLLDTDFYKLTMMQAVLHNYPNAEVEWEFRCRNQEDL---RLYLPAIREQLEYL 62 Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLP--EYDLSHKKGQYVLNFHGLW 125 L I++++ +L F P F+ +L F+ + ++ L G W Sbjct: 63 AGLAISDEQLAFLERIPF------LAPDFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPW 116 Query: 126 KDVTLWEIPSLIIISTLYSR 145 V L+E+P L +IS + +R Sbjct: 117 LHVILFEVPLLAMISEVRNR 136 >d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Length = 270 Score = 115 bits (290), Expect = 6e-27 Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 35/224 (15%) Query: 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMV 238 FG RR H A G G S L A + +GT H L ++ Sbjct: 13 DSPFFSFGIRRMHPAISPMIDRSAYIGG----ADGVSGILGAKLIDQDPVGTMPHALSIM 68 Query: 239 AAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEH-APSWMTQWKGFRH 297 + ++L D++ + F + R Sbjct: 69 LGDEEAWK-----------LTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRL 117 Query: 298 DSASPIEGGEKIIAWWKKMNCNP---QNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWG 354 D+ S G + + + + ++ S LD +++ + FG G Sbjct: 118 DTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAE----AFGVG 173 Query: 355 TNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAK 398 T++++ + + + N K K + Sbjct: 174 TSISSA------------KPFDFAMDIVEVNGKPETKRGKMSGR 205 >d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Length = 345 Score = 110 bits (277), Expect = 2e-25 Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 37/232 (15%) Query: 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMV 238 +++FGTRR L W A G TSN + I GT AH L Sbjct: 14 DDPLLEFGTRRAQELDAAIWGTRAAYIG---GADATSNVRAGKIFGIPVSGTHAHSLVQS 70 Query: 239 AAAITRTDIETQNAPYQMMQQWNRLY-DDNLLIVLPDSF--GTDFFLEHAPSWMTQ--WK 293 Y+ + + + D L+ D+ G + A + + Sbjct: 71 YG-----------NDYEAFMAYAKTHRDCVFLVDTYDTLKAGVPSAIRVAREMGDKINFL 119 Query: 294 GFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGW 353 G R DS +++ + + S++LD ++I+ K ++++ + +G Sbjct: 120 GVRIDSGDMAYISKRVREQLDEAGFTE--AKIYASNDLDENTILN-LKMQKSKIDV-WGV 175 Query: 354 GTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHA-----VKLSDDPAKTT 400 GT L +D L V K+ + +KLS + K T Sbjct: 176 GTKLITAYDQPA---------LGAVFKLVSIEGEDGQMKDTIKLSSNAEKVT 218 >d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Length = 279 Score = 89.3 bits (221), Expect = 5e-19 Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 38/226 (16%) Query: 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMV 238 + FG R H A G G S L A A+GT H L + Sbjct: 18 FKPVYSFGIRHMHPAIAPMIDRAAFIGG----CDGVSGVLGAEMMGEKAVGTMPHALIIT 73 Query: 239 AAAITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSF--GTDFFLEHAPSWMTQWKGF 295 + + ++ + ++ I L D+F + A + + Sbjct: 74 V-----------GDQVKAWKYFDEVIEEEVPRIALVDTFYDEKVEAVMAAEALGKKLFAV 122 Query: 296 RHDSASPIEGGEKIIAWWKKMNCN---PQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFG 352 R D+ S G + I + + S LD + I + FG Sbjct: 123 RLDTPSSRRGNFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVD-----AFG 177 Query: 353 WGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAK 398 G + + + + + + K K + Sbjct: 178 VGGAIAS------------AKPVDFALDIVEVEGKPIAKRGKLSGR 211 >d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Length = 137 Score = 88.4 bits (219), Expect = 1e-18 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 14/135 (10%) Query: 13 SSLLDTDFYKILMLQLIWK-FYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLR 71 S L TD Y+I M+Q W+ D+ F + R+ + I L ++++ +L Sbjct: 6 SLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFA-GLERLVNYLENLT 64 Query: 72 ITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYV------LNFHGLW 125 TE + +L E + FL++L++F+ S +G V + G Sbjct: 65 FTESDIAYLREVEE------YPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGPL 118 Query: 126 KDVTLWEIPSLIIIS 140 L E L +++ Sbjct: 119 AQCQLVETALLNMVN 133 >d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Length = 119 Score = 42.9 bits (101), Expect = 5e-05 Identities = 10/46 (21%), Positives = 16/46 (34%) Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQ 46 M + + SD I L +D Y + I D++V Sbjct: 1 MNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSG 46 >d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Length = 110 Score = 38.2 bits (89), Expect = 0.001 Identities = 8/46 (17%), Positives = 18/46 (39%) Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQ 46 MK ++ ++ I + TD Y + +++ KV + Sbjct: 1 MKRFYIANEDEIKAGKTTDVYFLRTKKILEVKNIRKKVLADVTTTS 46 >d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 149 Score = 27.1 bits (59), Expect = 2.8 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%) Query: 258 QQWNRLYDDNLLIVLPDSFGTDFF---LEHAPSWMTQWKGFRHDSASPIE 304 +QW+ L+ D + FG + P +K + A + Sbjct: 15 KQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPK 64 >d1sk7a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 187 Score = 26.2 bits (57), Expect = 4.7 Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 7/42 (16%) Query: 255 QMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFR 296 + ++ L L ++FG E WK F Sbjct: 117 FLFKKAAALE-------LDENFGARHLAEPEGGRAQGWKSFV 151 >d2evra1 b.34.11.3 (A:13-86) Cell wall-associated hydrolase Spr N-terminal domain {Nostoc punctiforme [TaxId: 272131]} Length = 74 Score = 26.3 bits (58), Expect = 4.7 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 10/58 (17%) Query: 46 QTQLHLSDKIDESELRTQLDHVRSLRITEKERK--WLVENSFYGKKQLFEPKFLSWLS 101 L+L D + + L TQ R L +T + V L E + WLS Sbjct: 8 LADLNLFDSPECTRLATQSASGRHLWVTSNHQNLAVEV--------YLCEDDYPGWLS 57 >d1eara2 d.58.38.1 (A:75-142) Urease metallochaperone UreE, C-terminal domain {Bacillus pasteurii [TaxId: 1474]} Length = 68 Score = 25.8 bits (57), Expect = 6.8 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 11/50 (22%) Query: 36 IKVTFSLFNRQTQLHLSDKIDESELRTQLDHV-------RSLRITEKERK 78 K+ F + NR H I++ E+ + D + + ER+ Sbjct: 16 GKMAFEIGNR----HTMCIIEDDEILVRYDKTLEKLIDEVGVSYEQSERR 61 >d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Length = 266 Score = 25.7 bits (56), Expect = 7.0 Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 372 TEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYL 410 T KLQ K +++ A +L + G+ + + YL Sbjct: 5 TRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYL 43 >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 Score = 25.3 bits (54), Expect = 8.9 Identities = 22/264 (8%), Positives = 56/264 (21%), Gaps = 21/264 (7%) Query: 166 KLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKI 225 ++ K +S K + R ++ + + S + Sbjct: 58 DEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNAT 117 Query: 226 NAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFL-EH 284 N G + + A + ++ + + ++ E Sbjct: 118 NIDGF--LNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNEL 175 Query: 285 APSWMTQWKGFR----------HDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVD 334 ++ GF P +I W + + D Sbjct: 176 YADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQ-GDDVYINGDGETSR 234 Query: 335 SIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKL-- 392 Y + + ++ + + + N + Sbjct: 235 DFCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPV 294 Query: 393 -----SDDPAKTTGDISEIKRYLK 411 D + DIS+ + L Sbjct: 295 YRDFREGDVRHSLADISKAAKLLG 318 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.136 0.421 Gapped Lambda K H 0.267 0.0647 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,631,488 Number of extensions: 77315 Number of successful extensions: 231 Number of sequences better than 10.0: 1 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 28 Length of query: 418 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 330 Effective length of database: 1,199,356 Effective search space: 395787480 Effective search space used: 395787480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (24.8 bits)