BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (418 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 418 Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/418 (100%), Positives = 418/418 (100%) Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESEL 60 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESEL Sbjct: 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESEL 60 Query: 61 RTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLN 120 RTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLN Sbjct: 61 RTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLN 120 Query: 121 FHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGL 180 FHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGL Sbjct: 121 FHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGL 180 Query: 181 KIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAA 240 KIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAA Sbjct: 181 KIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAA 240 Query: 241 AITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSA 300 AITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSA Sbjct: 241 AITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSA 300 Query: 301 SPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND 360 SPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND Sbjct: 301 SPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND 360 Query: 361 FDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLKIFKIKKS 418 FDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLKIFKIKKS Sbjct: 361 FDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLKIFKIKKS 418 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 26.6 bits (57), Expect = 0.73, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Query: 37 KVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKW--LVENSFY 86 ++ + L R+T + + +++ + LD S++I E ERK L EN Y Sbjct: 120 RIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRY 171 >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/81 (22%), Positives = 30/81 (37%) Query: 261 NRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNP 320 NR Y + + FG +F+ W+ H++ +G E W K+ + Sbjct: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD 261 Query: 321 QNKFLVFSDNLDVDSIIYTYK 341 + F D D + I T K Sbjct: 262 EENFNYKWDTFDFEEIGDTAK 282 >gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 449 Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust. Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 46 QTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKF 96 +TQ+ + D+ ++ H R T+K+R+W+V+ G L P++ Sbjct: 44 ETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQG--VGNGCLLSPEY 92 >gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62] Length = 233 Score = 23.5 bits (49), Expect = 6.5, Method: Compositional matrix adjust. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 261 NRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWK 314 NR Y + + FG +F+ W+ +++ EG E + W K Sbjct: 162 NRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCK 215 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.136 0.421 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,164 Number of Sequences: 1233 Number of extensions: 12075 Number of successful extensions: 28 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 10 length of query: 418 length of database: 328,796 effective HSP length: 76 effective length of query: 342 effective length of database: 235,088 effective search space: 80400096 effective search space used: 80400096 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)