HHsearch alignment for GI: 254780456 and conserved domain: COG0539
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=852.32 Aligned_cols=537 Identities=54% Similarity=0.882 Sum_probs=516.5
Q ss_pred HHHHHHHHHHH-HCCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 68899998854-02146389877999999981998999947960367899750566435563789879999999747998
Q gi|254780456|r 8 REDFATLLEES-FTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMGKGQYTPIKVGDEVEVYVERTENSFG 86 (576)
Q Consensus 8 ~~~f~~ll~~~-~~~~~~~~G~iv~G~V~~i~~~~v~vdig~k~~G~i~~~e~~~~~~~~~~kvGd~i~v~V~~~~~~~g 86 (576)
T Consensus 2 ~~~f~~~~~~~~~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~~~~~~~gd~v~v~v~~~e~~~g 81 (541)
T COG0539 2 EEEFAELFEESDKSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPVEDVVQVGDEVEVLVLRVEDGEG 81 (541)
T ss_pred CHHHHHHHHHHHCCHHCCCCCCEEEEEEEEEECCEEEEEECCCCCCEEEHHHCCCCCCCCEECCCCEEEEEEEEEECCCC
T ss_conf 31579999865321311688878999999993884999836761557688980566655131589889999999836886
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 59996878755575899999852897699999999679559997440200000112345433345555530231113354
Q gi|254780456|r 87 EAVFSRDKALREGVWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMD 166 (576)
Q Consensus 87 ~i~lS~~k~~~~~~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~~~Ii~~d 166 (576)
T Consensus 82 ~~~lS~~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~gvr~FlP~S~v~~r~v~d~~~~~Gk~~~~kiie~d 161 (541)
T COG0539 82 ELVLSRRKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIEGVRAFLPGSLVDVRPVRDLDPLIGKELEFKILELD 161 (541)
T ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCEEEECCHHHHCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 08861778887777899998874598389999988448489998787886557871545234652347865899999985
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCE
Q ss_conf 32331122121112222212111000112223302467887531471777448315788642024444433113326972
Q gi|254780456|r 167 KRRGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQ 246 (576)
Q Consensus 167 ~~~~~ivvS~k~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~ 246 (576)
T Consensus 162 ~~~n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdigGvdGLlHiseiS~~rv~~P~~vvkvGd~ 241 (541)
T COG0539 162 KKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIGGVDGLLHISEISWKRVDHPSEVVKVGDE 241 (541)
T ss_pred CCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEECCEEEEEEHHHCCCCCCCCHHHHCCCCCE
T ss_conf 33484787717776677888799997247887669999998615747999257166886476065555898995356988
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 58999987476527998521555432100000004896658999981596699985142000000111101113557421
Q gi|254780456|r 247 VKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSK 326 (576)
Q Consensus 247 v~~~Vl~~d~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~ 326 (576)
T Consensus 242 VkvkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~~-P~e 320 (541)
T COG0539 242 VKVKVISLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNV-PSE 320 (541)
T ss_pred EEEEEEEECCCCCEEEEEEHHCCCCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCCCCEEECHHHCCCCCCC-HHH
T ss_conf 9999999726788699994650469477776414788778899998614747999518843101030413133699-789
Q ss_pred EECCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCC
Q ss_conf 00378457999998621550478752034543210000012222213699999850169997068841354005530012
Q gi|254780456|r 327 ILSVGQQVEVVILEVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNR 406 (576)
Q Consensus 327 ~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~ 406 (576)
T Consensus 321 vv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~sw~~ 400 (541)
T COG0539 321 VVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADKHPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDLSWDR 400 (541)
T ss_pred HCCCCCEEEEEEEEECCCCCEEEEEEHHCCCCHHHHHHHHCCCCCEEEEEEEEECCCCEEECCCCCCCCEEEHHHCCCCC
T ss_conf 53568789999995072016677660000039446534305788767778865525533882588724327877737554
Q ss_pred CCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEE
Q ss_conf 20012342111234226885215654553201132210111000011004789879999999708908999617798499
Q gi|254780456|r 407 PGEKVIAEYAKGDIVKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINS 486 (576)
Q Consensus 407 ~~~~~~~~~k~G~~i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G 486 (576)
T Consensus 401 ~~~~~~-~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~--~~~~~~~~v~~~v~~i~~~G~~v~l~--~~v~G 475 (541)
T COG0539 401 PGEEAE-KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFS--EKYKKGSVVKGKVKSVKDKGAFVELG--GGVEG 475 (541)
T ss_pred CCCHHH-HHCCCCEEEEEEEEEECCCCEEEEEHHHHCCCCHHHHH--HHCCCCCEEEEEEEEECCCCEEEEEC--CCEEE
T ss_conf 565777-63157679999999703003765222443239256656--54468974899899982670699954--77044
Q ss_pred EEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 999747182121042011068987999999970576869987036557777999998403445777999999
Q gi|254780456|r 487 FIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGAVAQFGSSDSGASLGDILG 558 (576)
Q Consensus 487 ~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~~~~~~~~~~~~~~~~~~tlg~~~~ 558 (576)
T Consensus 476 ~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~lSik~~~~~eek~~~~~~~-~~~~~s~g~~~~ 539 (541)
T COG0539 476 LIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKILLSIKALERKEEKEALESYN-KDDDSSLGDILG 539 (541)
T ss_pred EEEHHHHHHH-------HCCCCCEEEEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHC-CCCCCCCCCCCC
T ss_conf 5641053364-------235798899999998177878999733655566788898624-777665552000