HHsearch alignment for GI: 254780456 and conserved domain: COG0539

>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=852.32  Aligned_cols=537  Identities=54%  Similarity=0.882  Sum_probs=516.5

Q ss_pred             HHHHHHHHHHH-HCCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf             68899998854-02146389877999999981998999947960367899750566435563789879999999747998
Q gi|254780456|r    8 REDFATLLEES-FTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMGKGQYTPIKVGDEVEVYVERTENSFG   86 (576)
Q Consensus         8 ~~~f~~ll~~~-~~~~~~~~G~iv~G~V~~i~~~~v~vdig~k~~G~i~~~e~~~~~~~~~~kvGd~i~v~V~~~~~~~g   86 (576)
T Consensus         2 ~~~f~~~~~~~~~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~~~~~~~gd~v~v~v~~~e~~~g   81 (541)
T COG0539           2 EEEFAELFEESDKSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPVEDVVQVGDEVEVLVLRVEDGEG   81 (541)
T ss_pred             CHHHHHHHHHHHCCHHCCCCCCEEEEEEEEEECCEEEEEECCCCCCEEEHHHCCCCCCCCEECCCCEEEEEEEEEECCCC
T ss_conf             31579999865321311688878999999993884999836761557688980566655131589889999999836886


Q ss_pred             EEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf             59996878755575899999852897699999999679559997440200000112345433345555530231113354
Q gi|254780456|r   87 EAVFSRDKALREGVWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMD  166 (576)
Q Consensus        87 ~i~lS~~k~~~~~~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~~~Ii~~d  166 (576)
T Consensus        82 ~~~lS~~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~gvr~FlP~S~v~~r~v~d~~~~~Gk~~~~kiie~d  161 (541)
T COG0539          82 ELVLSRRKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIEGVRAFLPGSLVDVRPVRDLDPLIGKELEFKILELD  161 (541)
T ss_pred             EEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCEEEECCHHHHCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             08861778887777899998874598389999988448489998787886557871545234652347865899999985


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCE
Q ss_conf             32331122121112222212111000112223302467887531471777448315788642024444433113326972
Q gi|254780456|r  167 KRRGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQ  246 (576)
Q Consensus       167 ~~~~~ivvS~k~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~  246 (576)
T Consensus       162 ~~~n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdigGvdGLlHiseiS~~rv~~P~~vvkvGd~  241 (541)
T COG0539         162 KKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIGGVDGLLHISEISWKRVDHPSEVVKVGDE  241 (541)
T ss_pred             CCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEECCEEEEEEHHHCCCCCCCCHHHHCCCCCE
T ss_conf             33484787717776677888799997247887669999998615747999257166886476065555898995356988


Q ss_pred             EEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             58999987476527998521555432100000004896658999981596699985142000000111101113557421
Q gi|254780456|r  247 VKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSK  326 (576)
Q Consensus       247 v~~~Vl~~d~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~  326 (576)
T Consensus       242 VkvkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~~-P~e  320 (541)
T COG0539         242 VKVKVISLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNV-PSE  320 (541)
T ss_pred             EEEEEEEECCCCCEEEEEEHHCCCCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCCCCEEECHHHCCCCCCC-HHH
T ss_conf             9999999726788699994650469477776414788778899998614747999518843101030413133699-789


Q ss_pred             EECCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCC
Q ss_conf             00378457999998621550478752034543210000012222213699999850169997068841354005530012
Q gi|254780456|r  327 ILSVGQQVEVVILEVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNR  406 (576)
Q Consensus       327 ~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~  406 (576)
T Consensus       321 vv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~sw~~  400 (541)
T COG0539         321 VVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADKHPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDLSWDR  400 (541)
T ss_pred             HCCCCCEEEEEEEEECCCCCEEEEEEHHCCCCHHHHHHHHCCCCCEEEEEEEEECCCCEEECCCCCCCCEEEHHHCCCCC
T ss_conf             53568789999995072016677660000039446534305788767778865525533882588724327877737554


Q ss_pred             CCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEE
Q ss_conf             20012342111234226885215654553201132210111000011004789879999999708908999617798499
Q gi|254780456|r  407 PGEKVIAEYAKGDIVKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINS  486 (576)
Q Consensus       407 ~~~~~~~~~k~G~~i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G  486 (576)
T Consensus       401 ~~~~~~-~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~--~~~~~~~~v~~~v~~i~~~G~~v~l~--~~v~G  475 (541)
T COG0539         401 PGEEAE-KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFS--EKYKKGSVVKGKVKSVKDKGAFVELG--GGVEG  475 (541)
T ss_pred             CCCHHH-HHCCCCEEEEEEEEEECCCCEEEEEHHHHCCCCHHHHH--HHCCCCCEEEEEEEEECCCCEEEEEC--CCEEE
T ss_conf             565777-63157679999999703003765222443239256656--54468974899899982670699954--77044


Q ss_pred             EEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             999747182121042011068987999999970576869987036557777999998403445777999999
Q gi|254780456|r  487 FIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGAVAQFGSSDSGASLGDILG  558 (576)
Q Consensus       487 ~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~~~~~~~~~~~~~~~~~~tlg~~~~  558 (576)
T Consensus       476 ~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~lSik~~~~~eek~~~~~~~-~~~~~s~g~~~~  539 (541)
T COG0539         476 LIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKILLSIKALERKEEKEALESYN-KDDDSSLGDILG  539 (541)
T ss_pred             EEEHHHHHHH-------HCCCCCEEEEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHC-CCCCCCCCCCCC
T ss_conf             5641053364-------235798899999998177878999733655566788898624-777665552000