HHsearch alignment for GI: 254780456 and conserved domain: COG0539
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=525.24 Aligned_cols=428 Identities=31% Similarity=0.559 Sum_probs=376.5
Q ss_pred HHHHHCCCEEEEEEEEEECCCEEEEECC-CHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 9985289769999999967955999744-020000011234543334555553023111335432331122121112222
Q gi|254780456|r 105 EAKFRAGERIEGVIFNQVKGGMTVDLNG-EVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVLEES 183 (576)
Q Consensus 105 ~~a~~~g~~v~g~V~~~~k~G~~V~i~g-i~~FlP~s~~~~~~~~d~~~~vG~~i~~~Ii~~d~~~~~ivvS~k~~l~~~ 183 (576)
T Consensus 16 ~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~~~-~~~~gd~v~v~v~~~e~~~g~~~lS~~k~~--- 91 (541)
T COG0539 16 DEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPVED-VVQVGDEVEVLVLRVEDGEGELVLSRRKAE--- 91 (541)
T ss_pred HHCCCCCCEEEEEEEEEECCEEEEEECCCCCCEEEHHHCCCCCCCC-EECCCCEEEEEEEEEECCCCEEEEEHHHHH---
T ss_conf 3116888789999999938849998367615576889805666551-315898899999998368860886177888---
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEE
Q ss_conf 21211100011222330246788753147177744831578864202444443311332697258999987476527998
Q gi|254780456|r 184 RAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISL 263 (576)
Q Consensus 184 ~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~l 263 (576)
T Consensus 92 ~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~gvr~FlP~S~v~~r~v~d~~--~~~Gk~~~~kiie~d~~~n~vv~ 169 (541)
T COG0539 92 RERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIEGVRAFLPGSLVDVRPVRDLD--PLIGKELEFKILELDKKRNNVVL 169 (541)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCEEEECCHHHHCCCCCCCCC--CCCCCEEEEEEEEECCCCCCEEE
T ss_conf 7777899998874598389999988448489998787886557871545234652--34786589999998533484787
Q ss_pred EECCCCCCC----CCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEE
Q ss_conf 521555432----1000000048966589999815966999851420000001111011135574210037845799999
Q gi|254780456|r 264 GMKQLEKNP----WDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVIL 339 (576)
Q Consensus 264 slK~l~~dp----~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl 339 (576)
T Consensus 170 SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdigG-vdGLlHiseiS~~-rv~~P~~vvkvGd~VkvkVi 247 (541)
T COG0539 170 SRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIGG-VDGLLHISEISWK-RVDHPSEVVKVGDEVKVKVI 247 (541)
T ss_pred EHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEECC-EEEEEEHHHCCCC-CCCCHHHHCCCCCEEEEEEE
T ss_conf 717776677888799997247887669999998615747999257-1668864760655-55898995356988999999
Q ss_pred EEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCCCC
Q ss_conf 86215504787520345432100000122222136999998501699970688413540055300122001234211123
Q gi|254780456|r 340 EVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGD 419 (576)
Q Consensus 340 ~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~G~ 419 (576)
T Consensus 248 ~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~~-P~evv~~Gq 326 (541)
T COG0539 248 SLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNV-PSEVVKVGQ 326 (541)
T ss_pred EECCCCCEEEEEEHHCCCCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCCCCEEECHHHCCCCCCC-HHHHCCCCC
T ss_conf 9726788699994650469477776414788778899998614747999518843101030413133699-789535687
Q ss_pred CCEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHC
Q ss_conf 42268852156545532011322101110000110047898799999997089089996177984999997471821210
Q gi|254780456|r 420 IVKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVD 499 (576)
Q Consensus 420 ~i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~ 499 (576)
T Consensus 327 ~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~--~~~~~g~~v~g~v~~~t~~g~fv~le--~gidG~vh~~d~sw~~~~ 402 (541)
T COG0539 327 EVEVKVLDIDPERRRISLGLKQLKENPWEEFA--DKHPVGDVVEGKVKSITDFGAFVELE--GGIDGLVHLSDLSWDRPG 402 (541)
T ss_pred EEEEEEEEECCCCCEEEEEEHHCCCCHHHHHH--HHCCCCCEEEEEEEEECCCCEEECCC--CCCCCEEEHHHCCCCCCC
T ss_conf 89999995072016677660000039446534--30578876777886552553388258--872432787773755456
Q ss_pred CCHHHCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 4201106898799999997057686998703655777799999840
Q gi|254780456|r 500 QDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGAVAQFG 545 (576)
Q Consensus 500 ~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~~~~~~~~~~~~ 545 (576)
T Consensus 403 ~~~~~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~~~~~ 448 (541)
T COG0539 403 EEAEKYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFSEKYK 448 (541)
T ss_pred CHHHHHCCCCEEEEEEEEEECCCCEEEEEHHHHCCCCHHHHHHHCC
T ss_conf 5777631576799999997030037652224432392566565446