HHsearch alignment for GI: 254780456 and conserved domain: COG0557

>COG0557 VacB Exoribonuclease R [Transcription].
Probab=97.88  E-value=0.00012  Score=45.46  Aligned_cols=72  Identities=36%  Similarity=0.585  Sum_probs=55.8

Q ss_pred             CCCCCEEEEEEEEEEEEEEEEECC-CCEEEEEHHHHHCCC----------CCHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf             222213699999850169997068-841354005530012----------200123421112342268852156545532
Q gi|254780456|r  368 PPGTEVEGEVKNKTDFGLFIGLDE-HLDGMIHLSDLDWNR----------PGEKVIAEYAKGDIVKAVVLDIDVGKERIS  436 (576)
Q Consensus       368 ~~G~~v~g~V~~v~~~g~~V~l~~-~i~g~i~~~dls~~~----------~~~~~~~~~k~G~~i~~~Vl~id~~~~~i~  436 (576)
T Consensus       621 ~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~~~i~  700 (706)
T COG0557         621 RVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDERKID  700 (706)
T ss_pred             CCCCEEEEEEEEEECCCEEEEECCCCEEEEEECCCCCCCEEECCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCEE
T ss_conf             15876889999873275799962754033476355886103023011232035566542338869999998705656135


Q ss_pred             CCH
Q ss_conf             011
Q gi|254780456|r  437 LGV  439 (576)
Q Consensus       437 LS~  439 (576)
T Consensus       701 ~~~  703 (706)
T COG0557         701 FEL  703 (706)
T ss_pred             EEE
T ss_conf             885