HHsearch alignment for GI: 254780456 and conserved domain: COG1095

>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription].
Probab=98.64  E-value=1.1e-07  Score=63.97  Aligned_cols=72  Identities=33%  Similarity=0.661  Sum_probs=38.4

Q ss_pred             CCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCC----------CC-CCEEECCCCEEEEEEEEECCCC-----C
Q ss_conf             223302467887531471777448315788642024444----------43-3113326972589999874765-----2
Q gi|254780456|r  196 EEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRI----------LH-PSKVLSIGQQVKVKIIRINQET-----H  259 (576)
Q Consensus       196 ~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~----------~~-~~~~~~~G~~v~~~Vl~~d~~~-----~  259 (576)
T Consensus        80 ~~gEVV~GeVv~~~~~G~fV~igp~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~~~  159 (183)
T COG1095          80 FRGEVVEGEVVEVVEFGAFVRIGPLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPRES  159 (183)
T ss_pred             CCCCEEEEEEEEEEECCEEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCEEEECCCEEEEEEEEEECCCCCCCCC
T ss_conf             35638999999996144699963622211386665753252755541240365158841988999999961467765421


Q ss_pred             EEEEEECC
Q ss_conf             79985215
Q gi|254780456|r  260 RISLGMKQ  267 (576)
Q Consensus       260 ~i~lslK~  267 (576)
T Consensus       160 ~I~lTmrq  167 (183)
T COG1095         160 KIGLTMRQ  167 (183)
T ss_pred             EEEEEECC
T ss_conf             69999536