HHsearch alignment for GI: 254780456 and conserved domain: COG1095
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription].
Probab=98.64 E-value=1.1e-07 Score=63.97 Aligned_cols=72 Identities=33% Similarity=0.661 Sum_probs=38.4
Q ss_pred CCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCC----------CC-CCEEECCCCEEEEEEEEECCCC-----C
Q ss_conf 223302467887531471777448315788642024444----------43-3113326972589999874765-----2
Q gi|254780456|r 196 EEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRI----------LH-PSKVLSIGQQVKVKIIRINQET-----H 259 (576)
Q Consensus 196 ~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~----------~~-~~~~~~~G~~v~~~Vl~~d~~~-----~ 259 (576)
T Consensus 80 ~~gEVV~GeVv~~~~~G~fV~igp~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~~~ 159 (183)
T COG1095 80 FRGEVVEGEVVEVVEFGAFVRIGPLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPRES 159 (183)
T ss_pred CCCCEEEEEEEEEEECCEEEEECCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCEEEECCCEEEEEEEEEECCCCCCCCC
T ss_conf 35638999999996144699963622211386665753252755541240365158841988999999961467765421
Q ss_pred EEEEEECC
Q ss_conf 79985215
Q gi|254780456|r 260 RISLGMKQ 267 (576)
Q Consensus 260 ~i~lslK~ 267 (576)
T Consensus 160 ~I~lTmrq 167 (183)
T COG1095 160 KIGLTMRQ 167 (183)
T ss_pred EEEEEECC
T ss_conf 69999536