HHsearch alignment for GI: 254780456 and conserved domain: COG1097
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis].
Probab=97.81 E-value=0.002 Score=38.04 Aligned_cols=162 Identities=16% Similarity=0.220 Sum_probs=95.8
Q ss_pred CCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCC---CCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHC
Q ss_conf 222213699999850169997068841354005530012---20012342111234226885215654553201132210
Q gi|254780456|r 368 PPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNR---PGEKVIAEYAKGDIVKAVVLDIDVGKERISLGVKQLSG 444 (576)
Q Consensus 368 ~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~---~~~~~~~~~k~G~~i~~~Vl~id~~~~~i~LS~K~l~~ 444 (576)
T Consensus 63 ~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~~~-~~~L~~k~--- 138 (239)
T COG1097 63 EVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDRDG-EVELTLKD--- 138 (239)
T ss_pred CCCCEEEEEEEEECCCCEEEECCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-CEEEEEEC---
T ss_conf 88999999999971563389728953237426662002255422345222676878999999726777-53799606---
Q ss_pred CCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCE
Q ss_conf 11100001100478987999999970890899961779849999974718212104201106898799999997057686
Q gi|254780456|r 445 SAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGK 524 (576)
Q Consensus 445 ~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~r 524 (576)
T Consensus 139 ------~~~GkL~~G~iv~-----i~p~k--------------VpR-vig~~--~sm~~~--l~~~~~~~I~-V-G~NG~ 186 (239)
T COG1097 139 ------EGLGKLKNGQIVK-----IPPSK--------------VPR-VIGKK--GSMLNM--LKEKTGCEII-V-GQNGR 186 (239)
T ss_pred ------CCCCCCCCCEEEE-----ECHHH--------------CCE-EECCC--CCHHHH--HHHCCCEEEE-E-ECCCE
T ss_conf ------6773024888999-----76022--------------524-76688--647887--6540576899-9-66988
Q ss_pred EEEEEHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99870365-577779999984034457779999999998743
Q gi|254780456|r 525 VSLSIKAL-EIAEEKGAVAQFGSSDSGASLGDILGMALKNRG 565 (576)
Q Consensus 525 i~LS~k~~-~~~~~~~~~~~~~~~~~~~tlg~~~~~~lk~~~ 565 (576)
T Consensus 187 IWV~~~~~~~e~~~~~aI~~ie~ea~~~gltdr~~~~i~~~~ 228 (239)
T COG1097 187 IWVDGENESLEELAIEAIRKIEREAHTSGLTDRIKEFLKKLL 228 (239)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 996278863279999999987554335667999999999987