HHsearch alignment for GI: 254780456 and conserved domain: COG1107
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].
Probab=98.39 E-value=7.6e-06 Score=52.70 Aligned_cols=207 Identities=21% Similarity=0.297 Sum_probs=117.0
Q ss_pred EEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99996795599974402000001123454333455555302311133543233-11221211122222121110001122
Q gi|254780456|r 118 IFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRG-NIVVSRRAVLEESRAEQRSEIVQKLE 196 (576)
Q Consensus 118 V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~~~Ii~~d~~~~-~ivvS~k~~l~~~~~~~~~~~~~~l~ 196 (576)
T Consensus 55 pc~~c~gkG~V~v~~~c~~c~G~gkv~~-c~~cG~~~~~~~~~lc~~c~~~~~~vy~l~------------~~c~~~Dve 121 (715)
T COG1107 55 PCPKCRGKGTVTVYDTCPECGGTGKVLT-CDICGDIIVPWEEGLCPECRRKPKIVYVLD------------NSCTMEDVE 121 (715)
T ss_pred CCCEECCCEEEEEEEECCCCCCCEEEEE-ECCCCCEECCCCCCCCHHHHHCCCEEEEEC------------CCCCHHHCC
T ss_conf 7771105516898862566798103776-044454625763334746760776169963------------556620034
Q ss_pred CCCEEEEEEEEEECCCCEEEEC-CCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 2330246788753147177744-831578864202444443311332697258999987476527998521555432100
Q gi|254780456|r 197 EGQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDD 275 (576)
Q Consensus 197 ~G~~v~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~l~~dp~~~ 275 (576)
T Consensus 122 ~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~~--~Y~~ 193 (715)
T COG1107 122 AGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGLD--RYRE 193 (715)
T ss_pred CCEEEECCCCCHHHHCCEEECCHHHHCCCCCCCCCCC------CCCCCCCEEEEEEECCCCCCCCCCEEECCCC--CCHH
T ss_conf 6405403102143406524337354334440124788------7778787489984215777775420665875--2101
Q ss_pred --CCCCC----------CCCCEE--EEEEEEECC-CEE-EEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEE
Q ss_conf --00000----------489665--899998159-669-99851420000001111011135574210037845799999
Q gi|254780456|r 276 --VQDKY----------VEGSKV--SGVVTNLTD-YGV-FVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVIL 339 (576)
Q Consensus 276 --~~~~~----------~~G~~v--~g~V~~v~~-~G~-~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl 339 (576)
T Consensus 194 ~~~~ke~~r~~i~did~~ig~tV~I~GeV~qikqT~GPTVFtltDe-tg~i~aAAFe~aGvRAyP~--ievGdiV~V-iG 269 (715)
T COG1107 194 VQVEKELPRTLIDDLDEMIGKTVRIEGEVTQIKQTSGPTVFTLTDE-TGAIWAAAFEEAGVRAYPE--IEVGDIVEV-IG 269 (715)
T ss_pred HHHHHHCCCCCHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECC-CCCEEHHHHCCCCCCCCCC--CCCCCEEEE-EE
T ss_conf 1122104531077777534866999778999997589879998068-8844266643577434899--877856999-87
Q ss_pred EEECCCCEEE
Q ss_conf 8621550478
Q gi|254780456|r 340 EVNPARKRIS 349 (576)
Q Consensus 340 ~id~~~~~i~ 349 (576)
T Consensus 270 ~V~~r~g~lQ 279 (715)
T COG1107 270 EVTRRDGRLQ 279 (715)
T ss_pred EEEECCCCEE
T ss_conf 7750478278