HHsearch alignment for GI: 254780456 and conserved domain: COG1107

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair].
Probab=98.39  E-value=7.6e-06  Score=52.70  Aligned_cols=207  Identities=21%  Similarity=0.297  Sum_probs=117.0

Q ss_pred             EEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99996795599974402000001123454333455555302311133543233-11221211122222121110001122
Q gi|254780456|r  118 IFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRG-NIVVSRRAVLEESRAEQRSEIVQKLE  196 (576)
Q Consensus       118 V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~~~Ii~~d~~~~-~ivvS~k~~l~~~~~~~~~~~~~~l~  196 (576)
T Consensus        55 pc~~c~gkG~V~v~~~c~~c~G~gkv~~-c~~cG~~~~~~~~~lc~~c~~~~~~vy~l~------------~~c~~~Dve  121 (715)
T COG1107          55 PCPKCRGKGTVTVYDTCPECGGTGKVLT-CDICGDIIVPWEEGLCPECRRKPKIVYVLD------------NSCTMEDVE  121 (715)
T ss_pred             CCCEECCCEEEEEEEECCCCCCCEEEEE-ECCCCCEECCCCCCCCHHHHHCCCEEEEEC------------CCCCHHHCC
T ss_conf             7771105516898862566798103776-044454625763334746760776169963------------556620034


Q ss_pred             CCCEEEEEEEEEECCCCEEEEC-CCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             2330246788753147177744-831578864202444443311332697258999987476527998521555432100
Q gi|254780456|r  197 EGQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDD  275 (576)
Q Consensus       197 ~G~~v~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~l~~dp~~~  275 (576)
T Consensus       122 ~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~~--~Y~~  193 (715)
T COG1107         122 AGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGLD--RYRE  193 (715)
T ss_pred             CCEEEECCCCCHHHHCCEEECCHHHHCCCCCCCCCCC------CCCCCCCEEEEEEECCCCCCCCCCEEECCCC--CCHH
T ss_conf             6405403102143406524337354334440124788------7778787489984215777775420665875--2101


Q ss_pred             --CCCCC----------CCCCEE--EEEEEEECC-CEE-EEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEE
Q ss_conf             --00000----------489665--899998159-669-99851420000001111011135574210037845799999
Q gi|254780456|r  276 --VQDKY----------VEGSKV--SGVVTNLTD-YGV-FVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVIL  339 (576)
Q Consensus       276 --~~~~~----------~~G~~v--~g~V~~v~~-~G~-~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl  339 (576)
T Consensus       194 ~~~~ke~~r~~i~did~~ig~tV~I~GeV~qikqT~GPTVFtltDe-tg~i~aAAFe~aGvRAyP~--ievGdiV~V-iG  269 (715)
T COG1107         194 VQVEKELPRTLIDDLDEMIGKTVRIEGEVTQIKQTSGPTVFTLTDE-TGAIWAAAFEEAGVRAYPE--IEVGDIVEV-IG  269 (715)
T ss_pred             HHHHHHCCCCCHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECC-CCCEEHHHHCCCCCCCCCC--CCCCCEEEE-EE
T ss_conf             1122104531077777534866999778999997589879998068-8844266643577434899--877856999-87


Q ss_pred             EEECCCCEEE
Q ss_conf             8621550478
Q gi|254780456|r  340 EVNPARKRIS  349 (576)
Q Consensus       340 ~id~~~~~i~  349 (576)
T Consensus       270 ~V~~r~g~lQ  279 (715)
T COG1107         270 EVTRRDGRLQ  279 (715)
T ss_pred             EEEECCCCEE
T ss_conf             7750478278