HHsearch alignment for GI: 254780456 and conserved domain: COG1185

>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis].

Probab=99.20  E-value=2.8e-11  Score=85.61  Aligned_cols=100  Identities=29%  Similarity=0.428  Sum_probs=76.6

Q ss_pred             EEECCCCEEEEEEECCC--CCCC---CCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHH
Q ss_conf             86215504787520345--4321---000001222221369999985016999706884135400553001220012342
Q gi|254780456|r  340 EVNPARKRISLGLKQAL--INPW---EEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAE  414 (576)
Q Consensus       340 ~id~~~~~i~lS~k~~~--~~p~---~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~  414 (576)
T Consensus       586 die-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~gkdgl~hiS~~~~~-rv~kv~dv  663 (692)
T COG1185         586 DIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKE-RVEKVEDV  663 (692)
T ss_pred             EEC-CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCEEEEEHHHHHH-HHHCCCCE
T ss_conf             845-8985899956568889999999998743101528998899986412589833896206874353345-55320453


Q ss_pred             HCCCCCCEEEEEECCCCCCCCCCCHHHH
Q ss_conf             1112342268852156545532011322
Q gi|254780456|r  415 YAKGDIVKAVVLDIDVGKERISLGVKQL  442 (576)
Q Consensus       415 ~k~G~~i~~~Vl~id~~~~~i~LS~K~l  442 (576)
T Consensus       664 lk~Gd~v~Vkv~~iD~-~Gri~ls~~~~  690 (692)
T COG1185         664 LKEGDEVKVKVIEIDK-QGRIRLSIKAV  690 (692)
T ss_pred             EECCCEEEEEEEEECC-CCCCCCEEHHC
T ss_conf             5448659999963366-67703211210