HHsearch alignment for GI: 254780456 and conserved domain: PRK00087
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed.
Probab=100.00 E-value=0 Score=471.67 Aligned_cols=365 Identities=27% Similarity=0.467 Sum_probs=329.2
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCEEEECC-CEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEECC
Q ss_conf 1000112223302467887531471777448-315788642024444433113326972589999874765279985215
Q gi|254780456|r 189 SEIVQKLEEGQVIEGTVKNITDYGVFVDLSG-VDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQ 267 (576)
Q Consensus 189 ~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g-~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~ 267 (576)
T Consensus 296 ~~s~k~~~~G~iV~G~Vv~v~~~~v~VDiG~KseG~Ip~~E~~~~~~~~~~~~~kvGDei~v~V~k~ed~~G~i~LS~kk 375 (670)
T PRK00087 296 NENEKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLEELTKDEDSSLKESVKVGDEIEVKVLKLENEDGYVVLSKKE 375 (670)
T ss_pred HHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEHHH
T ss_conf 76334677898799999999389899983678436888999366767773345799998999999986899829988899
Q ss_pred C-CCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCC
Q ss_conf 5-543210000000489665899998159669998514200000011110111355742100378457999998621550
Q gi|254780456|r 268 L-EKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARK 346 (576)
Q Consensus 268 l-~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~ 346 (576)
T Consensus 376 a~~~~~w~~l~~a~e~~e~V~g~V~~~vKGG~~V~i~-gi~~FiP~Sq~~-~~~~~d~~~--~vG~~~~~kIie~d~~k~ 451 (670)
T PRK00087 376 ADREKAWKELEEAFENGETVKGKVKEVVKGGLLVDYG-GVRAFLPASHVE-LGYVEDLSA--YKGQELEVKIIEFDKKRK 451 (670)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEC-CEEEEECHHHCC-CCCCCCHHH--HCCCEEEEEEEEECCCCC
T ss_conf 9988879999999868986999999998585999989-989980227615-665677278--769748999999844457
Q ss_pred E--EEEEEECCCCC----CCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCCCCC
Q ss_conf 4--78752034543----21000001222221369999985016999706884135400553001220012342111234
Q gi|254780456|r 347 R--ISLGLKQALIN----PWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDI 420 (576)
Q Consensus 347 ~--i~lS~k~~~~~----p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~G~~ 420 (576)
T Consensus 452 r~niV~Srr~vlee~~~~~k~~~~~~l~~G~~v~G~V~~i~~~GaFvdlg-GvdGLvHiSelSw~r-v~~p~~~~~~G~~ 529 (670)
T PRK00087 452 KTKVVLSRKALLKEEKEKQKEETWNSLEEGDVVEGEVKRLTDFGAFVDIG-GVDGLLHVSEISWGR-VEKPSDVLKVGDE 529 (670)
T ss_pred CCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEC-CEEEEEEHHHCCCCC-CCCHHHHCCCCCE
T ss_conf 67489780999998899999999974889988999999997340799977-989999843447677-7898996278977
Q ss_pred CEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCC
Q ss_conf 22688521565455320113221011100001100478987999999970890899961779849999974718212104
Q gi|254780456|r 421 VKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQ 500 (576)
Q Consensus 421 i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~ 500 (576)
T Consensus 530 v~vkIl~iD~e~~rIsLs~K~l~~dPw~~~~--~~~~~G~~v~g~V~~i~~fGaFVel--~~gveGlih~sels~~~~~~ 605 (670)
T PRK00087 530 IKVYILEIDKENKKLSLSLKKLLPDPWENVE--EKYPVGSIVLGKVVRIAPFGAFVEL--EPGVDGLVHISEISWKRIDK 605 (670)
T ss_pred EEEEEEEECCCCCEEEEEECCCCCCCHHHHH--HHCCCCCEEEEEEEEEECCEEEEEE--CCCCEEEEEHHHCCCCCCCC
T ss_conf 9999999838878898763437789478888--6489969999999999677079995--79978998989948432489
Q ss_pred CHHHCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHH
Q ss_conf 20110689879999999705768699870365577779999984034--4577799999999987
Q gi|254780456|r 501 DPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGAVAQFGSS--DSGASLGDILGMALKN 563 (576)
Q Consensus 501 ~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~~~~~~~~~~~~~~--~~~~tlg~~~~~~lk~ 563 (576)
T Consensus 606 ~~~~~~~Gd~v~~kIl~id~~~krisLSiK~~~~~peke~~~~~~~~~~~~~~tlgdi~~~~~k~ 670 (670)
T PRK00087 606 PEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEEEPEKEGDIEKVKKEKENEVTLGDIEGYLPKS 670 (670)
T ss_pred HHHCCCCCCEEEEEEEEECCCCCEEEEEHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCC
T ss_conf 77748999989999999837778899784653118004689976522665685288975565249