HHsearch alignment for GI: 254780456 and conserved domain: PRK00087

>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed.
Probab=100.00  E-value=0  Score=471.67  Aligned_cols=365  Identities=27%  Similarity=0.467  Sum_probs=329.2

Q ss_pred             CCCCCCCCCCCEEEEEEEEEECCCCEEEECC-CEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEECC
Q ss_conf             1000112223302467887531471777448-315788642024444433113326972589999874765279985215
Q gi|254780456|r  189 SEIVQKLEEGQVIEGTVKNITDYGVFVDLSG-VDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQ  267 (576)
Q Consensus       189 ~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g-~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~  267 (576)
T Consensus       296 ~~s~k~~~~G~iV~G~Vv~v~~~~v~VDiG~KseG~Ip~~E~~~~~~~~~~~~~kvGDei~v~V~k~ed~~G~i~LS~kk  375 (670)
T PRK00087        296 NENEKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLEELTKDEDSSLKESVKVGDEIEVKVLKLENEDGYVVLSKKE  375 (670)
T ss_pred             HHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEHHH
T ss_conf             76334677898799999999389899983678436888999366767773345799998999999986899829988899


Q ss_pred             C-CCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCC
Q ss_conf             5-543210000000489665899998159669998514200000011110111355742100378457999998621550
Q gi|254780456|r  268 L-EKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARK  346 (576)
Q Consensus       268 l-~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~  346 (576)
T Consensus       376 a~~~~~w~~l~~a~e~~e~V~g~V~~~vKGG~~V~i~-gi~~FiP~Sq~~-~~~~~d~~~--~vG~~~~~kIie~d~~k~  451 (670)
T PRK00087        376 ADREKAWKELEEAFENGETVKGKVKEVVKGGLLVDYG-GVRAFLPASHVE-LGYVEDLSA--YKGQELEVKIIEFDKKRK  451 (670)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEC-CEEEEECHHHCC-CCCCCCHHH--HCCCEEEEEEEEECCCCC
T ss_conf             9988879999999868986999999998585999989-989980227615-665677278--769748999999844457


Q ss_pred             E--EEEEEECCCCC----CCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCCCCC
Q ss_conf             4--78752034543----21000001222221369999985016999706884135400553001220012342111234
Q gi|254780456|r  347 R--ISLGLKQALIN----PWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDI  420 (576)
Q Consensus       347 ~--i~lS~k~~~~~----p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~G~~  420 (576)
T Consensus       452 r~niV~Srr~vlee~~~~~k~~~~~~l~~G~~v~G~V~~i~~~GaFvdlg-GvdGLvHiSelSw~r-v~~p~~~~~~G~~  529 (670)
T PRK00087        452 KTKVVLSRKALLKEEKEKQKEETWNSLEEGDVVEGEVKRLTDFGAFVDIG-GVDGLLHVSEISWGR-VEKPSDVLKVGDE  529 (670)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEC-CEEEEEEHHHCCCCC-CCCHHHHCCCCCE
T ss_conf             67489780999998899999999974889988999999997340799977-989999843447677-7898996278977


Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCC
Q ss_conf             22688521565455320113221011100001100478987999999970890899961779849999974718212104
Q gi|254780456|r  421 VKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQ  500 (576)
Q Consensus       421 i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~  500 (576)
T Consensus       530 v~vkIl~iD~e~~rIsLs~K~l~~dPw~~~~--~~~~~G~~v~g~V~~i~~fGaFVel--~~gveGlih~sels~~~~~~  605 (670)
T PRK00087        530 IKVYILEIDKENKKLSLSLKKLLPDPWENVE--EKYPVGSIVLGKVVRIAPFGAFVEL--EPGVDGLVHISEISWKRIDK  605 (670)
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCCCHHHHH--HHCCCCCEEEEEEEEEECCEEEEEE--CCCCEEEEEHHHCCCCCCCC
T ss_conf             9999999838878898763437789478888--6489969999999999677079995--79978998989948432489


Q ss_pred             CHHHCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHH
Q ss_conf             20110689879999999705768699870365577779999984034--4577799999999987
Q gi|254780456|r  501 DPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGAVAQFGSS--DSGASLGDILGMALKN  563 (576)
Q Consensus       501 ~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~~~~~~~~~~~~~~--~~~~tlg~~~~~~lk~  563 (576)
T Consensus       606 ~~~~~~~Gd~v~~kIl~id~~~krisLSiK~~~~~peke~~~~~~~~~~~~~~tlgdi~~~~~k~  670 (670)
T PRK00087        606 PEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEEEPEKEGDIEKVKKEKENEVTLGDIEGYLPKS  670 (670)
T ss_pred             HHHCCCCCCEEEEEEEEECCCCCEEEEEHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCC
T ss_conf             77748999989999999837778899784653118004689976522665685288975565249