HHsearch alignment for GI: 254780456 and conserved domain: PRK05054

>PRK05054 exoribonuclease II; Provisional.
Probab=98.50  E-value=5.5e-07  Score=59.64  Aligned_cols=72  Identities=21%  Similarity=0.376  Sum_probs=57.6

Q ss_pred             CCCCC--EEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHH---HH--CC-------CHHHCCCCCEEEEEEEEECCC
Q ss_conf             47898--799999997089089996177984999997471821---21--04-------201106898799999997057
Q gi|254780456|r  456 LRKND--VVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRD---RV--DQ-------DPGRFSKGQIVDACVVNVSKK  521 (576)
Q Consensus       456 ~~~G~--iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~---~~--~~-------~~~~~~vG~~v~~~Vi~id~~  521 (576)
T Consensus       557 ~~iG~~~~f~g~Is~vt~fG~fV~L~~-~~~eG~V~~~~l~~~~~~~~~~~~~~~~~~~~~~~yrlGd~v~V~v~~vd~~  635 (644)
T PRK05054        557 DKAGTDTRFAAEIIDISRGGMRVRLLE-NGAIAFIPAPFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRME  635 (644)
T ss_pred             HHCCCCCEEEEEEEEEEECCEEEEEEC-CCEEEEEEEEECCCCCCEEEECCHHHHEECCCCEEEECCCEEEEEEEEEECH
T ss_conf             744898727899975981778999866-8508999811325677338982022103405868997899999999998000


Q ss_pred             CCEEEEE
Q ss_conf             6869987
Q gi|254780456|r  522 DGKVSLS  528 (576)
Q Consensus       522 ~~ri~LS  528 (576)
T Consensus       636 ~r~I~~~  642 (644)
T PRK05054        636 TRSIIAR  642 (644)
T ss_pred             HCEEEEE
T ss_conf             1848769