HHsearch alignment for GI: 254780456 and conserved domain: PRK05054
>PRK05054 exoribonuclease II; Provisional.
Probab=98.50 E-value=5.5e-07 Score=59.64 Aligned_cols=72 Identities=21% Similarity=0.376 Sum_probs=57.6
Q ss_pred CCCCC--EEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHH---HH--CC-------CHHHCCCCCEEEEEEEEECCC
Q ss_conf 47898--799999997089089996177984999997471821---21--04-------201106898799999997057
Q gi|254780456|r 456 LRKND--VVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRD---RV--DQ-------DPGRFSKGQIVDACVVNVSKK 521 (576)
Q Consensus 456 ~~~G~--iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~---~~--~~-------~~~~~~vG~~v~~~Vi~id~~ 521 (576)
T Consensus 557 ~~iG~~~~f~g~Is~vt~fG~fV~L~~-~~~eG~V~~~~l~~~~~~~~~~~~~~~~~~~~~~~yrlGd~v~V~v~~vd~~ 635 (644)
T PRK05054 557 DKAGTDTRFAAEIIDISRGGMRVRLLE-NGAIAFIPAPFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRME 635 (644)
T ss_pred HHCCCCCEEEEEEEEEEECCEEEEEEC-CCEEEEEEEEECCCCCCEEEECCHHHHEECCCCEEEECCCEEEEEEEEEECH
T ss_conf 744898727899975981778999866-8508999811325677338982022103405868997899999999998000
Q ss_pred CCEEEEE
Q ss_conf 6869987
Q gi|254780456|r 522 DGKVSLS 528 (576)
Q Consensus 522 ~~ri~LS 528 (576)
T Consensus 636 ~r~I~~~ 642 (644)
T PRK05054 636 TRSIIAR 642 (644)
T ss_pred HCEEEEE
T ss_conf 1848769