HHsearch alignment for GI: 254780456 and conserved domain: PRK05054
>PRK05054 exoribonuclease II; Provisional.
Probab=98.48 E-value=7.8e-07 Score=58.69 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=53.9
Q ss_pred CCCC--CEEEEEEEEEEEEEEEEE-CCCCEEEEEHHHHHCC--CCC---H------HHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 2222--136999998501699970-6884135400553001--220---0------123421112342268852156545
Q gi|254780456|r 368 PPGT--EVEGEVKNKTDFGLFIGL-DEHLDGMIHLSDLDWN--RPG---E------KVIAEYAKGDIVKAVVLDIDVGKE 433 (576)
Q Consensus 368 ~~G~--~v~g~V~~v~~~g~~V~l-~~~i~g~i~~~dls~~--~~~---~------~~~~~~k~G~~i~~~Vl~id~~~~ 433 (576)
T Consensus 558 ~iG~~~~f~g~Is~vt~fG~fV~L~~~~~eG~V~~~~l~~~~~~~~~~~~~~~~~~~~~~~yrlGd~v~V~v~~vd~~~r 637 (644)
T PRK05054 558 KAGTDTRFAAEIIDISRGGMRVRLLENGAIAFIPAPFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR 637 (644)
T ss_pred HCCCCCEEEEEEEEEEECCEEEEEECCCEEEEEEEEECCCCCCEEEECCHHHHEECCCCEEEECCCEEEEEEEEEECHHC
T ss_conf 44898727899975981778999866850899981132567733898202210340586899789999999999800018
Q ss_pred CCCC
Q ss_conf 5320
Q gi|254780456|r 434 RISL 437 (576)
Q Consensus 434 ~i~L 437 (576)
T Consensus 638 ~I~~ 641 (644)
T PRK05054 638 SIIA 641 (644)
T ss_pred EEEE
T ss_conf 4876