HHsearch alignment for GI: 254780456 and conserved domain: PRK05054

>PRK05054 exoribonuclease II; Provisional.
Probab=98.48  E-value=7.8e-07  Score=58.69  Aligned_cols=70  Identities=19%  Similarity=0.212  Sum_probs=53.9

Q ss_pred             CCCC--CEEEEEEEEEEEEEEEEE-CCCCEEEEEHHHHHCC--CCC---H------HHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf             2222--136999998501699970-6884135400553001--220---0------123421112342268852156545
Q gi|254780456|r  368 PPGT--EVEGEVKNKTDFGLFIGL-DEHLDGMIHLSDLDWN--RPG---E------KVIAEYAKGDIVKAVVLDIDVGKE  433 (576)
Q Consensus       368 ~~G~--~v~g~V~~v~~~g~~V~l-~~~i~g~i~~~dls~~--~~~---~------~~~~~~k~G~~i~~~Vl~id~~~~  433 (576)
T Consensus       558 ~iG~~~~f~g~Is~vt~fG~fV~L~~~~~eG~V~~~~l~~~~~~~~~~~~~~~~~~~~~~~yrlGd~v~V~v~~vd~~~r  637 (644)
T PRK05054        558 KAGTDTRFAAEIIDISRGGMRVRLLENGAIAFIPAPFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR  637 (644)
T ss_pred             HCCCCCEEEEEEEEEEECCEEEEEECCCEEEEEEEEECCCCCCEEEECCHHHHEECCCCEEEECCCEEEEEEEEEECHHC
T ss_conf             44898727899975981778999866850899981132567733898202210340586899789999999999800018


Q ss_pred             CCCC
Q ss_conf             5320
Q gi|254780456|r  434 RISL  437 (576)
Q Consensus       434 ~i~L  437 (576)
T Consensus       638 ~I~~  641 (644)
T PRK05054        638 SIIA  641 (644)
T ss_pred             EEEE
T ss_conf             4876