HHsearch alignment for GI: 254780456 and conserved domain: PRK06676
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed.
Probab=100.00 E-value=0 Score=577.69 Aligned_cols=355 Identities=41% Similarity=0.692 Sum_probs=339.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCEEEEEE-CCCEEEEEEHHHHCCC---CCCCCCCCCCEEEEEEEEEE
Q ss_conf 0688999988540214638987799999998199899994-7960367899750566---43556378987999999974
Q gi|254780456|r 7 SREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDV-GLKFEGRIPRREFMGK---GQYTPIKVGDEVEVYVERTE 82 (576)
Q Consensus 7 ~~~~f~~ll~~~~~~~~~~~G~iv~G~V~~i~~~~v~vdi-g~k~~G~i~~~e~~~~---~~~~~~kvGd~i~v~V~~~~ 82 (576)
T Consensus 1 ~~~~fe~~l~~---~~~i~~G~iV~G~V~~I~~~~v~Vdi~G~k~eG~I~~~E~s~~~~~~~~~~~kvGd~V~~~Vl~~~ 77 (390)
T PRK06676 1 MMEEFEESLNS---VKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDTLEVYVLKVE 77 (390)
T ss_pred CHHHHHHHHHH---HHCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEEHHHHCCCCCCCHHHCCCCCCEEEEEEEEEE
T ss_conf 96799998752---006899998999999998998999933863589999999456643584024699899999999998
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 79985999687875557589999985289769999999967955999744020000011234543334555553023111
Q gi|254780456|r 83 NSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEI 162 (576)
Q Consensus 83 ~~~g~i~lS~~k~~~~~~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~~~I 162 (576)
T Consensus 78 ~~~~~l~LS~kk~~~~~~w~~~~~~~~~g~~v~g~V~~~~kgG~~V~~~gv~gFlP~S~ls~~~~~~~~~~vGq~v~~kV 157 (390)
T PRK06676 78 DGEGNYLLSKRRLEARKAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDVGGVRGFIPASLISTRFVEDLSDFKGKTLDVKI 157 (390)
T ss_pred CCCCEEEEEHHHHHHCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCEEEEEHHHCCCCCCCCCHHHCCEEEEEEE
T ss_conf 89973999967922010088888765379779999999955859999768168775487256445770554371699999
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEEC
Q ss_conf 33543233112212111222221211100011222330246788753147177744831578864202444443311332
Q gi|254780456|r 163 LKMDKRRGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLS 242 (576)
Q Consensus 163 i~~d~~~~~ivvS~k~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~ 242 (576)
T Consensus 158 i~vd~~~~~ivlS~K~~l~~~~~~~~~~~~~~l~~Gdvv~G~V~~i~~~G~FV~lggv~glvh~sels~~~~~~~~~~~k 237 (390)
T PRK06676 158 IELDPEKNRVILSRRAVVEEERAEKKKELLSSLKEGDVVEGKVARLTDFGAFVDIGGVDGLVHISELSHERVNKPSEVVS 237 (390)
T ss_pred EEEECCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEECCCEEEEEEECCCCHHHHCCHHHHHC
T ss_conf 99853788289703245466676657667763468984789999994563699807767999961057333359888304
Q ss_pred CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 69725899998747652799852155543210000000489665899998159669998514200000011110111355
Q gi|254780456|r 243 IGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNI 322 (576)
Q Consensus 243 ~G~~v~~~Vl~~d~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~ 322 (576)
T Consensus 238 ~G~~v~~~Vl~id~~~~ri~LslK~l~~dP~~~~~~~~~vG~~v~G~V~~i~~fG~fV~l~~g~~Glih~sels~~-~~~ 316 (390)
T PRK06676 238 VGQEVEVKVLSIDEETERISLSLKDTLPGPWEGVEEKLKEGDVIEGTVKRLTNFGAFVEVLPGVEGLVHISQISHK-HIA 316 (390)
T ss_pred CCCEEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCC-CCC
T ss_conf 7975799999994678899999832678956776653369989999999994737999977996899998994753-336
Q ss_pred CCCCEECCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7421003784579999986215504787520345432100000
Q gi|254780456|r 323 HPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPWEEFSK 365 (576)
Q Consensus 323 ~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~ 365 (576)
T Consensus 317 ~p~~~~~~Gd~V~~~Vl~id~e~~ri~LS~K~l~~~p~~e~~~ 359 (390)
T PRK06676 317 KPSEVLEEGQEVKVKVLEVDEEEKRISLSIKALEEAPAEEESR 359 (390)
T ss_pred CHHHCCCCCCEEEEEEEEECCCCCEEEEEEHHCCCCHHHHHHH
T ss_conf 8555278999999999998177898998814134481566666