HHsearch alignment for GI: 254780456 and conserved domain: PRK06676

>PRK06676 rpsA 30S ribosomal protein S1; Reviewed.
Probab=100.00  E-value=0  Score=577.69  Aligned_cols=355  Identities=41%  Similarity=0.692  Sum_probs=339.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCEEEEEE-CCCEEEEEEHHHHCCC---CCCCCCCCCCEEEEEEEEEE
Q ss_conf             0688999988540214638987799999998199899994-7960367899750566---43556378987999999974
Q gi|254780456|r    7 SREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDV-GLKFEGRIPRREFMGK---GQYTPIKVGDEVEVYVERTE   82 (576)
Q Consensus         7 ~~~~f~~ll~~~~~~~~~~~G~iv~G~V~~i~~~~v~vdi-g~k~~G~i~~~e~~~~---~~~~~~kvGd~i~v~V~~~~   82 (576)
T Consensus         1 ~~~~fe~~l~~---~~~i~~G~iV~G~V~~I~~~~v~Vdi~G~k~eG~I~~~E~s~~~~~~~~~~~kvGd~V~~~Vl~~~   77 (390)
T PRK06676          1 MMEEFEESLNS---VKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDTLEVYVLKVE   77 (390)
T ss_pred             CHHHHHHHHHH---HHCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEEHHHHCCCCCCCHHHCCCCCCEEEEEEEEEE
T ss_conf             96799998752---006899998999999998998999933863589999999456643584024699899999999998


Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf             79985999687875557589999985289769999999967955999744020000011234543334555553023111
Q gi|254780456|r   83 NSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEI  162 (576)
Q Consensus        83 ~~~g~i~lS~~k~~~~~~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~~~I  162 (576)
T Consensus        78 ~~~~~l~LS~kk~~~~~~w~~~~~~~~~g~~v~g~V~~~~kgG~~V~~~gv~gFlP~S~ls~~~~~~~~~~vGq~v~~kV  157 (390)
T PRK06676         78 DGEGNYLLSKRRLEARKAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDVGGVRGFIPASLISTRFVEDLSDFKGKTLDVKI  157 (390)
T ss_pred             CCCCEEEEEHHHHHHCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCEEEEEHHHCCCCCCCCCHHHCCEEEEEEE
T ss_conf             89973999967922010088888765379779999999955859999768168775487256445770554371699999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEEC
Q ss_conf             33543233112212111222221211100011222330246788753147177744831578864202444443311332
Q gi|254780456|r  163 LKMDKRRGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLS  242 (576)
Q Consensus       163 i~~d~~~~~ivvS~k~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~  242 (576)
T Consensus       158 i~vd~~~~~ivlS~K~~l~~~~~~~~~~~~~~l~~Gdvv~G~V~~i~~~G~FV~lggv~glvh~sels~~~~~~~~~~~k  237 (390)
T PRK06676        158 IELDPEKNRVILSRRAVVEEERAEKKKELLSSLKEGDVVEGKVARLTDFGAFVDIGGVDGLVHISELSHERVNKPSEVVS  237 (390)
T ss_pred             EEEECCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEECCCEEEEEEECCCCHHHHCCHHHHHC
T ss_conf             99853788289703245466676657667763468984789999994563699807767999961057333359888304


Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf             69725899998747652799852155543210000000489665899998159669998514200000011110111355
Q gi|254780456|r  243 IGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNI  322 (576)
Q Consensus       243 ~G~~v~~~Vl~~d~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~  322 (576)
T Consensus       238 ~G~~v~~~Vl~id~~~~ri~LslK~l~~dP~~~~~~~~~vG~~v~G~V~~i~~fG~fV~l~~g~~Glih~sels~~-~~~  316 (390)
T PRK06676        238 VGQEVEVKVLSIDEETERISLSLKDTLPGPWEGVEEKLKEGDVIEGTVKRLTNFGAFVEVLPGVEGLVHISQISHK-HIA  316 (390)
T ss_pred             CCCEEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCC-CCC
T ss_conf             7975799999994678899999832678956776653369989999999994737999977996899998994753-336


Q ss_pred             CCCCEECCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCC
Q ss_conf             7421003784579999986215504787520345432100000
Q gi|254780456|r  323 HPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPWEEFSK  365 (576)
Q Consensus       323 ~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~  365 (576)
T Consensus       317 ~p~~~~~~Gd~V~~~Vl~id~e~~ri~LS~K~l~~~p~~e~~~  359 (390)
T PRK06676        317 KPSEVLEEGQEVKVKVLEVDEEEKRISLSIKALEEAPAEEESR  359 (390)
T ss_pred             CHHHCCCCCCEEEEEEEEECCCCCEEEEEEHHCCCCHHHHHHH
T ss_conf             8555278999999999998177898998814134481566666