HHsearch alignment for GI: 254780456 and conserved domain: PRK06676
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed.
Probab=100.00 E-value=0 Score=518.27 Aligned_cols=365 Identities=29% Similarity=0.483 Sum_probs=331.3
Q ss_pred CCCCCCCCCEEEEEEEEEECCCCEEEE-C-CCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEECCC
Q ss_conf 001122233024678875314717774-4-83157886420244444331133269725899998747652799852155
Q gi|254780456|r 191 IVQKLEEGQVIEGTVKNITDYGVFVDL-S-GVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQL 268 (576)
Q Consensus 191 ~~~~l~~G~~v~g~V~~i~~~g~~V~~-~-g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~l 268 (576)
T Consensus 11 ~~~~i~~G~iV~G~V~~I~~~~v~Vdi~G~k~eG~I~~~E~s~~~~~~~~~~~kvGd~V~~~Vl~~~~~~~~l~LS~kk~ 90 (390)
T PRK06676 11 SVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDTLEVYVLKVEDGEGNYLLSKRRL 90 (390)
T ss_pred HHHCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEEHHHHCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEHHHH
T ss_conf 20068999989999999989989999338635899999994566435840246998999999999988997399996792
Q ss_pred CC-CCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCE
Q ss_conf 54-32100000004896658999981596699985142000000111101113557421003784579999986215504
Q gi|254780456|r 269 EK-NPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKR 347 (576)
Q Consensus 269 ~~-dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~ 347 (576)
T Consensus 91 ~~~~~w~~~~~~~~~g~~v~g~V~~~~kgG~~V~~~-gv~gFlP~S~ls~-~~~~~~~~~--vGq~v~~kVi~vd~~~~~ 166 (390)
T PRK06676 91 EARKAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDVG-GVRGFIPASLIST-RFVEDLSDF--KGKTLDVKIIELDPEKNR 166 (390)
T ss_pred HHCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEC-CCEEEEEHHHCCC-CCCCCCHHH--CCEEEEEEEEEEECCCCC
T ss_conf 201008888876537977999999995585999976-8168775487256-445770554--371699999998537882
Q ss_pred EEEEEECCCCC----CCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCCCCCCEE
Q ss_conf 78752034543----21000001222221369999985016999706884135400553001220012342111234226
Q gi|254780456|r 348 ISLGLKQALIN----PWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDIVKA 423 (576)
Q Consensus 348 i~lS~k~~~~~----p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~G~~i~~ 423 (576)
T Consensus 167 ivlS~K~~l~~~~~~~~~~~~~~l~~Gdvv~G~V~~i~~~G~FV~lg-gv~glvh~sels~~~-~~~~~~~~k~G~~v~~ 244 (390)
T PRK06676 167 VILSRRAVVEEERAEKKKELLSSLKEGDVVEGKVARLTDFGAFVDIG-GVDGLVHISELSHER-VNKPSEVVSVGQEVEV 244 (390)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEECC-CEEEEEEECCCCHHH-HCCHHHHHCCCCEEEE
T ss_conf 89703245466676657667763468984789999994563699807-767999961057333-3598883047975799
Q ss_pred EEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHH
Q ss_conf 88521565455320113221011100001100478987999999970890899961779849999974718212104201
Q gi|254780456|r 424 VVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPG 503 (576)
Q Consensus 424 ~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~ 503 (576)
T Consensus 245 ~Vl~id~~~~ri~LslK~l~~dP~~~~--~~~~~vG~~v~G~V~~i~~fG~fV~l~--~g~~Glih~sels~~~~~~p~~ 320 (390)
T PRK06676 245 KVLSIDEETERISLSLKDTLPGPWEGV--EEKLKEGDVIEGTVKRLTNFGAFVEVL--PGVEGLVHISQISHKHIAKPSE 320 (390)
T ss_pred EEEEEECCCCEEEEEEEECCCCCHHHH--HHHCCCCCEEEEEEEEEECCEEEEEEC--CCCEEEEEHHHCCCCCCCCHHH
T ss_conf 999994678899999832678956776--653369989999999994737999977--9968999989947533368555
Q ss_pred HCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHH-----HHHH--HCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1068987999999970576869987036557777999-----9984--034457779999999998743
Q gi|254780456|r 504 RFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGA-----VAQF--GSSDSGASLGDILGMALKNRG 565 (576)
Q Consensus 504 ~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~~~~~~~-----~~~~--~~~~~~~tlg~~~~~~lk~~~ 565 (576)
T Consensus 321 ~~~~Gd~V~~~Vl~id~e~~ri~LS~K~l~~~p~~e~~~~~~~~~~~~~~~~~~~~lgd~~~~~~~~~~ 389 (390)
T PRK06676 321 VLEEGQEVKVKVLEVDEEEKRISLSIKALEEAPAEEESRREEYRQYELPEEETGFSLGDLIGDKLKDLK 389 (390)
T ss_pred CCCCCCEEEEEEEEECCCCCEEEEEEHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 278999999999998177898998814134481566666656664146677688538999988875435