HHsearch alignment for GI: 254780456 and conserved domain: PRK07400

>PRK07400 30S ribosomal protein S1; Reviewed.
Probab=100.00  E-value=0  Score=463.05  Aligned_cols=298  Identities=29%  Similarity=0.478  Sum_probs=275.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCC---CCCCCCCCCCEEEEEEEEEE
Q ss_conf             106889999885402146389877999999981998999947960367899750566---43556378987999999974
Q gi|254780456|r    6 PSREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMGK---GQYTPIKVGDEVEVYVERTE   82 (576)
Q Consensus         6 ~~~~~f~~ll~~~~~~~~~~~G~iv~G~V~~i~~~~v~vdig~k~~G~i~~~e~~~~---~~~~~~kvGd~i~v~V~~~~   82 (576)
T Consensus        13 ~~~edF~~lLe~~~--~~~k~GdiVeG~V~~I~~~~v~VdiG~k~eG~i~~~E~s~~~~~~~~e~~~vGd~iev~V~~~~   90 (314)
T PRK07400         13 FTHEDFAALLDKYD--YHFKPGDIVNGTVFSLEPKGALIDIGAKTAAFMPLQEMSINRVEGPSEVLQPGETREFFILSEE   90 (314)
T ss_pred             CCHHHHHHHHHHHH--CCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf             69999999998752--3699999899999999799899997798079999999366656894301358976999999985


Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf             79985999687875557589999985289769999999967955999744020000011234543334555553023111
Q gi|254780456|r   83 NSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEI  162 (576)
Q Consensus        83 ~~~g~i~lS~~k~~~~~~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~~~I  162 (576)
T Consensus        91 ~~~g~i~LS~k~~~~~~~w~~l~~~~~~~~~V~gkV~~~~kgG~~V~i~gl~gFiP~Sqls~~~~~~--~~vG~~~~~kI  168 (314)
T PRK07400         91 NEDGQLTLSIRRIEYMRAWERVRQLQKEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTRKPKE--ELVGEELPLKF  168 (314)
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCEEEEEEHHHCCCCCCCH--HHCCCEEEEEE
T ss_conf             6889689986043212069999977325987999999996384899976865685524516355632--10697688999


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEEC
Q ss_conf             33543233112212111222221211100011222330246788753147177744831578864202444443311332
Q gi|254780456|r  163 LKMDKRRGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLS  242 (576)
Q Consensus       163 i~~d~~~~~ivvS~k~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~  242 (576)
T Consensus       169 ieid~~~~rivlS~r~~l~e-------~~~~~l~vG~vv~G~V~~I~~fGaFVdigGvdGLlHiSeiSw~rv~~p~dv~k  241 (314)
T PRK07400        169 LEVDEERNRLVLSHRRALVE-------RKMNRLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVFN  241 (314)
T ss_pred             EEEECCCCCEEEEEEHHHHH-------HHHHCCCCCCEEEEEEEEEECEEEEEEECCCEEEEEHHHCCCCCCCCHHHHCC
T ss_conf             99715668248998333201-------36750889988999999996408899978918999814616544489878267


Q ss_pred             CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCC
Q ss_conf             6972589999874765279985215554321000000048966589999815966999851420000001111
Q gi|254780456|r  243 IGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQI  315 (576)
Q Consensus       243 ~G~~v~~~Vl~~d~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sel  315 (576)
T Consensus       242 vGd~V~vkVi~iD~e~~rIsLSiK~l~~dPwd~i~~K~kvgd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  313 (314)
T PRK07400        242 VNDQMKVMIIDLDAERGRISLSTKQLEPEPGDMLTDPQKVFDKAEEM-AAKYRQMLLEQAEGGEEPIEAAAEL  313 (314)
T ss_pred             CCCEEEEEEEEECCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf             99999999999738898899776665558477762577765899999-9999988765231441310012107