HHsearch alignment for GI: 254780456 and conserved domain: PRK07400

>PRK07400 30S ribosomal protein S1; Reviewed.
Probab=100.00  E-value=0  Score=380.76  Aligned_cols=288  Identities=24%  Similarity=0.420  Sum_probs=259.6

Q ss_pred             CCCCCCCCCEEEEEEEEEECCCCEEEECC-CEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEECCCC
Q ss_conf             00112223302467887531471777448-31578864202444443311332697258999987476527998521555
Q gi|254780456|r  191 IVQKLEEGQVIEGTVKNITDYGVFVDLSG-VDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLE  269 (576)
Q Consensus       191 ~~~~l~~G~~v~g~V~~i~~~g~~V~~~g-~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~l~  269 (576)
T Consensus        25 ~~~~~k~GdiVeG~V~~I~~~~v~VdiG~k~eG~i~~~E~s~~~~~~~~e~~~vGd~iev~V~~~~~~~g~i~LS~k~~~  104 (314)
T PRK07400         25 YDYHFKPGDIVNGTVFSLEPKGALIDIGAKTAAFMPLQEMSINRVEGPSEVLQPGETREFFILSEENEDGQLTLSIRRIE  104 (314)
T ss_pred             HHCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECHHH
T ss_conf             52369999989999999979989999779807999999936665689430135897699999998568896899860432


Q ss_pred             -CCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCEE
Q ss_conf             -4321000000048966589999815966999851420000001111011135574210037845799999862155047
Q gi|254780456|r  270 -KNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRI  348 (576)
Q Consensus       270 -~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i  348 (576)
T Consensus       105 ~~~~w~~l~~~~~~~~~V~gkV~~~~kgG~~V~i~-gl~gFiP~Sqls~~~----~~~~~-vG~~~~~kIieid~~~~ri  178 (314)
T PRK07400        105 YMRAWERVRQLQKEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHISTRK----PKEEL-VGEELPLKFLEVDEERNRL  178 (314)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEC-CEEEEEEHHHCCCCC----CCHHH-CCCEEEEEEEEEECCCCCE
T ss_conf             12069999977325987999999996384899976-865685524516355----63210-6976889999971566824


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCCCCCCEEEEEEC
Q ss_conf             87520345432100000122222136999998501699970688413540055300122001234211123422688521
Q gi|254780456|r  349 SLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDIVKAVVLDI  428 (576)
Q Consensus       349 ~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~G~~i~~~Vl~i  428 (576)
T Consensus       179 vlS~r~~l~---e~~~~~l~vG~vv~G~V~~I~~fGaFVdig-GvdGLlHiSeiSw~r-v~~p~dv~kvGd~V~vkVi~i  253 (314)
T PRK07400        179 VLSHRRALV---ERKMNRLEVGEVVVGTVRGIKPYGAFIDIG-GVSGLLHISEISHEH-IETPHSVFNVNDQMKVMIIDL  253 (314)
T ss_pred             EEEEEHHHH---HHHHHCCCCCCEEEEEEEEEECEEEEEEEC-CCEEEEEHHHCCCCC-CCCHHHHCCCCCEEEEEEEEE
T ss_conf             899833320---136750889988999999996408899978-918999814616544-489878267999999999997


Q ss_pred             CCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCC
Q ss_conf             565455320113221011100001100478987999999970890899961779849999974718
Q gi|254780456|r  429 DVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLS  494 (576)
Q Consensus       429 d~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is  494 (576)
T Consensus       254 D~e~~rIsLSiK~l~~dPwd~i~--~K~kvgd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  314 (314)
T PRK07400        254 DAERGRISLSTKQLEPEPGDMLT--DPQKVFDKAE-EMAAKYRQMLLEQA--EGGEEPIEAAAELE  314 (314)
T ss_pred             CCCCCEEEEEHHHCCCCCHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHH--CCCHHHHHHHHCCC
T ss_conf             38898899776665558477762--5777658999-99999998876523--14413100121079