HHsearch alignment for GI: 254780456 and conserved domain: PRK07899
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed.
Probab=100.00 E-value=0 Score=627.56 Aligned_cols=351 Identities=38% Similarity=0.678 Sum_probs=339.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCC---CCCCCCCCCCEEEEEEEEE
Q ss_conf 7106889999885402146389877999999981998999947960367899750566---4355637898799999997
Q gi|254780456|r 5 NPSREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMGK---GQYTPIKVGDEVEVYVERT 81 (576)
Q Consensus 5 ~~~~~~f~~ll~~~~~~~~~~~G~iv~G~V~~i~~~~v~vdig~k~~G~i~~~e~~~~---~~~~~~kvGd~i~v~V~~~ 81 (576)
T Consensus 16 ~~S~edf~~~le~s~k--~~~eGdIV~GtVv~I~~d~VlVDIG~KsEGiIP~~E~s~~~d~d~~e~vkvGDeIeV~Vi~~ 93 (484)
T PRK07899 16 IGSAEDFLAAIDKTIK--YFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93 (484)
T ss_pred CCCHHHHHHHHHHHHH--CCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 9999999998887873--58899889999999978989998268704787999946675778454578999999999987
Q ss_pred ECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 47998599968787555758999998528976999999996795599974402000001123454333455555302311
Q gi|254780456|r 82 ENSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFE 161 (576)
Q Consensus 82 ~~~~g~i~lS~~k~~~~~~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~~~ 161 (576)
T Consensus 94 ed~eG~vvLSkkkA~~~k~W~~Leea~e~~~vVeGkV~~~vKGGliVdi-GvraFlP~Sqid~r~v~dl~~~vGk~l~~k 172 (484)
T PRK07899 94 EDKEGRLILSKKRAQYERAWGTIEKLKEKDGVVTGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQEIEAK 172 (484)
T ss_pred ECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEC-CCEEEEECCCCCCCCCCCHHHHCCCEEEEE
T ss_conf 3788749988899765678999999975798699999999667099982-657998642256510478388779879999
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEE
Q ss_conf 13354323311221211122222121110001122233024678875314717774483157886420244444331133
Q gi|254780456|r 162 ILKMDKRRGNIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVL 241 (576)
Q Consensus 162 Ii~~d~~~~~ivvS~k~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~ 241 (576)
T Consensus 173 Iieid~~r~nIVlSRRa~LEee~~~~r~e~l~~L~~G~vveG~Vk~It~fGAFVDLGGVDGLvHiSEiSW~Rv~~Psev~ 252 (484)
T PRK07899 173 IIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 252 (484)
T ss_pred EEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECCEEEEEEHHHCCCCCCCCHHHHC
T ss_conf 99975766806501999999999889999997477898799999982164689995572378981340356779989957
Q ss_pred CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 26972589999874765279985215554321000000048966589999815966999851420000001111011135
Q gi|254780456|r 242 SIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKN 321 (576)
Q Consensus 242 ~~G~~v~~~Vl~~d~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~ 321 (576)
T Consensus 253 ~vGd~V~VkVl~iD~Ek~RISLslKql~~dPW~~~~~k~~vG~vv~GkV~~l~~fGAFVel~~GIEGLVHISElS-~~~v 331 (484)
T PRK07899 253 EVGDEVTVEVLDVDLDRERVSLSLKATQEDPWQVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELA-ERHV 331 (484)
T ss_pred CCCCEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCC-CCCC
T ss_conf 799879999987747678898862547788389898648998989999998726605999369967667877645-6444
Q ss_pred CCCCCEECCCCEEEEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 57421003784579999986215504787520345432
Q gi|254780456|r 322 IHPSKILSVGQQVEVVILEVNPARKRISLGLKQALINP 359 (576)
Q Consensus 322 ~~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p 359 (576)
T Consensus 332 ~~P~dvv~~GdeV~vkIl~ID~e~rRISLSiKQa~e~~ 369 (484)
T PRK07899 332 EVPEQVVSVGDEVMVKVIDIDLERRRISLSLKQANEDY 369 (484)
T ss_pred CCHHHHCCCCCEEEEEEEEECCCCCEEECCEECCCCCC
T ss_conf 79888477998899999987577678542300167898