HHsearch alignment for GI: 254780456 and conserved domain: PRK07899
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed.
Probab=100.00 E-value=0 Score=455.39 Aligned_cols=333 Identities=28% Similarity=0.525 Sum_probs=187.5
Q ss_pred HHHHHCCCEEEEEEEEEECCCEEEEECC-CHHHHHCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCEEECCCCCCC
Q ss_conf 9985289769999999967955999744-0200000112345433345--555530231113354323311221211122
Q gi|254780456|r 105 EAKFRAGERIEGVIFNQVKGGMTVDLNG-EVAFLPRSQIDIRPVRDVT--PLMHEPQLFEILKMDKRRGNIVVSRRAVLE 181 (576)
Q Consensus 105 ~~a~~~g~~v~g~V~~~~k~G~~V~i~g-i~~FlP~s~~~~~~~~d~~--~~vG~~i~~~Ii~~d~~~~~ivvS~k~~l~ 181 (576)
T Consensus 30 ~k~~~eGdIV~GtVv~I~~d~VlVDIG~KsEGiIP~~E~s~~~d~d~~e~vkvGDeIeV~Vi~~ed~eG~vvLSkkkA~- 108 (484)
T PRK07899 30 IKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKEGRLILSKKRAQ- 108 (484)
T ss_pred HHCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEHHHHH-
T ss_conf 7358899889999999978989998268704787999946675778454578999999999987378874998889976-
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEE
Q ss_conf 22212111000112223302467887531471777448315788642024444433113326972589999874765279
Q gi|254780456|r 182 ESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRI 261 (576)
Q Consensus 182 ~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i 261 (576)
T Consensus 109 --~~k~W~~Leea~e~~~vVeGkV~~~vKGGliVdi-GvraFlP~Sqid~r~v~dl~~~--vGk~l~~kIieid~~r~nI 183 (484)
T PRK07899 109 --YERAWGTIEKLKEKDGVVTGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPY--IGQEIEAKIIELDKNRNNV 183 (484)
T ss_pred --HHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEC-CCEEEEECCCCCCCCCCCHHHH--CCCEEEEEEEEECCCCCCE
T ss_conf --5678999999975798699999999667099982-6579986422565104783887--7987999999975766806
Q ss_pred EEEECCCCCCC----CCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEE
Q ss_conf 98521555432----10000000489665899998159669998514200000011110111355742100378457999
Q gi|254780456|r 262 SLGMKQLEKNP----WDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVV 337 (576)
Q Consensus 262 ~lslK~l~~dp----~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~ 337 (576)
T Consensus 184 VlSRRa~LEee~~~~r~e~l~~L~~G~vveG~Vk~It~fGAFVDLG-GVDGLvHiSEiSW-~Rv~~Psev~~vGd~V~Vk 261 (484)
T PRK07899 184 VLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSW-KHIDHPSEVVEVGDEVTVE 261 (484)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEC-CEEEEEEHHHCCC-CCCCCHHHHCCCCCEEEEE
T ss_conf 5019999999998899999974778987999999821646899955-7237898134035-6779989957799879999
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCC
Q ss_conf 99862155047875203454321000001222221369999985016999706884135400553001220012342111
Q gi|254780456|r 338 ILEVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAK 417 (576)
Q Consensus 338 Vl~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~ 417 (576)
T Consensus 262 Vl~iD~Ek~RISLslKql~~dPW~~~~~k~~vG~vv~GkV~~l~~fGAFVel~~GIEGLVHISElS-~~~v~~P~dvv~~ 340 (484)
T PRK07899 262 VLDVDLDRERVSLSLKATQEDPWQVFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELA-ERHVEVPEQVVSV 340 (484)
T ss_pred EEEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCC-CCCCCCHHHHCCC
T ss_conf 987747678898862547788389898648998989999998726605999369967667877645-6444798884779
Q ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHCCC
Q ss_conf 23422688521565455320113221011
Q gi|254780456|r 418 GDIVKAVVLDIDVGKERISLGVKQLSGSA 446 (576)
Q Consensus 418 G~~i~~~Vl~id~~~~~i~LS~K~l~~~~ 446 (576)
T Consensus 341 GdeV~vkIl~ID~e~rRISLSiKQa~e~~ 369 (484)
T PRK07899 341 GDEVMVKVIDIDLERRRISLSLKQANEDY 369 (484)
T ss_pred CCEEEEEEEEECCCCCEEECCEECCCCCC
T ss_conf 98899999987577678542300167898