HHsearch alignment for GI: 254780456 and conserved domain: PRK08563
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional.
Probab=98.46 E-value=7.4e-07 Score=58.84 Aligned_cols=32 Identities=44% Similarity=0.910 Sum_probs=11.8
Q ss_pred CCEEEEEEEEEECCCCEEEECCCEEEEEEEEC
Q ss_conf 33024678875314717774483157886420
Q gi|254780456|r 198 GQVIEGTVKNITDYGVFVDLSGVDGLLHVTDI 229 (576)
Q Consensus 198 G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~l 229 (576)
T Consensus 82 ~EVv~g~V~~~~~~G~fv~~Gp~d~~vh~sqi 113 (182)
T PRK08563 82 QEVVEGEVVEVVEFGAFVRIGPVDGLLHISQI 113 (182)
T ss_pred CCEEEEEEEEEECCEEEEEEECCCEEEEHHHC
T ss_conf 84899999999667699998466117609994