HHsearch alignment for GI: 254780456 and conserved domain: PRK08563
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional.
Probab=98.43 E-value=1.7e-06 Score=56.58 Aligned_cols=71 Identities=28% Similarity=0.526 Sum_probs=33.4
Q ss_pred CCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCC----------CHHHHHHHCCCCCCEEEEEECC-----CCCCC
Q ss_conf 22136999998501699970688413540055300122----------0012342111234226885215-----65455
Q gi|254780456|r 370 GTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRP----------GEKVIAEYAKGDIVKAVVLDID-----VGKER 434 (576)
Q Consensus 370 G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~----------~~~~~~~~k~G~~i~~~Vl~id-----~~~~~ 434 (576)
T Consensus 82 ~EVv~g~V~~~~~~G~fv~~Gp-~d~~vh~sqi~dd~~~fD~~~~~~ig~~s~~~i~~Gd~VR~RIv~vs~~~~~~~~~k 160 (182)
T PRK08563 82 QEVVEGEVVEVVEFGAFVRIGP-VDGLLHISQIMDDYISYDEKNGALIGKESKRTLKVGDVVRARIVAVSLNEREPRDSK 160 (182)
T ss_pred CCEEEEEEEEEECCEEEEEEEC-CCEEEEHHHCCCCCCEECCCCCEEEEECCCEEECCCCEEEEEEEEEECCCCCCCCCE
T ss_conf 8489999999966769999846-611760999477762383656519990686498289989999999771888877662
Q ss_pred CCCCHHH
Q ss_conf 3201132
Q gi|254780456|r 435 ISLGVKQ 441 (576)
Q Consensus 435 i~LS~K~ 441 (576)
T Consensus 161 IglTmrq 167 (182)
T PRK08563 161 IGLTMRQ 167 (182)
T ss_pred EEEEECC
T ss_conf 6689538